Volume 13; Issue 5

Journal of Proteome Research

Volume 13; Issue 5

1

Fecal Metabolomics of Healthy Breast-Fed versus Formula-Fed Infants before and during In Vitro Batch Culture Fermentation

Chow, JoMay, Panasevich, Matthew R., Alexander, Danny, Vester Boler, Brittany M., Rossoni Serao, Mariana C., Faber, Trevor A., Bauer, Laura L., Fahey, George C.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.60 MB

english, 2014

2

Porphyromonas gingivalis Outer Membrane Vesicles Exclusively Contain Outer Membrane and Periplasmic Proteins and Carry a Cargo Enriched with Virulence Factors

Veith, Paul D., Chen, Yu-Yen, Gorasia, Dhana G., Chen, Dina, Glew, Michelle D., O’Brien-Simpson, Neil M., Cecil, Jessica D., Holden, James A., Reynolds, Eric C.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 6.28 MB

english, 2014

3

Quantitative Proteomics Analysis Reveals That the Nuclear Cap-Binding Complex Proteins Arabidopsis CBP20 and CBP80 Modulate the Salt Stress Response

Kong, Xiangxiang, Ma, Lan, Yang, Liming, Chen, Qian, Xiang, Nan, Yang, Yongping, Hu, Xiangyang

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 618 KB

english, 2014

4

Urinary Loss of Tricarboxylic Acid Cycle Intermediates As Revealed by Metabolomics Studies: An Underlying Mechanism to Reduce Lipid Accretion by Whey Protein Ingestion?

Lillefosse, Haldis H., Clausen, Morten R., Yde, Christian C., Ditlev, Ditte B., Zhang, Xumin, Du, Zhen-Yu, Bertram, Hanne C., Madsen, Lise, Kristiansen, Karsten, Liaset, Bjørn

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.77 MB

english, 2014

5

Association of N-Glycosylation with Breast Carcinoma and Systemic Features Using High-Resolution Quantitative UPLC

Saldova, Radka, Asadi Shehni, Akram, Haakensen, Vilde D., Steinfeld, Israel, Hilliard, Mark, Kifer, Ilona, Helland, Åslaug, Yakhini, Zohar, Børresen-Dale, Anne-Lise, Rudd, Pauline M.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 7.67 MB

english, 2014

6

Phosphoproteomic Analysis Provides Novel Insights into Stress Responses in Phaeodactylum tricornutum , a Model Diatom

Chen, Zhuo, Yang, Ming-kun, Li, Chong-yang, Wang, Yan, Zhang, Jia, Wang, Dian-bing, Zhang, Xian-en, Ge, Feng

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.79 MB

english, 2014

7

Quantitative Proteomics of Synaptic and Nonsynaptic Mitochondria: Insights for Synaptic Mitochondrial Vulnerability

Stauch, Kelly L., Purnell, Phillip R., Fox, Howard S.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 824 KB

english, 2014

8

Proteasomal Serine Hydrolases Are Up-Regulated by and Required for Influenza Virus Infection

Shahiduzzaman, Md, Ezatti, Peyman, Xin, Gang, Coombs, Kevin M.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 6.36 MB

english, 2014

9

Secretome of the Biocontrol Agent Metarhizium anisopliae Induced by the Cuticle of the Cotton Pest Dysdercus peruvianus Reveals New Insights into Infection

Beys-da-Silva, Walter O., Santi, Lucélia, Berger, Markus, Calzolari, Diego, Passos, Dario O., Guimarães, Jorge A., Moresco, James J., Yates, John R.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.29 MB

english, 2014

10

Blue Light-Induced Proteomic Changes in Etiolated Arabidopsis Seedlings

Deng, Zhiping, Oses-Prieto, Juan A., Kutschera, Ulrich, Tseng, Tong-Seung, Hao, Lingzhao, Burlingame, Alma L., Wang, Zhi-Yong, Briggs, Winslow R.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 502 KB

english, 2014

11

Protein-to-mRNA Ratios Are Conserved between Pseudomonas aeruginosa Strains

Kwon, Taejoon, Huse, Holly K., Vogel, Christine, Whiteley, Marvin, Marcotte, Edward M.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.66 MB

english, 2014

12

Pre- and Post-Processing Workflow for Affinity Purification Mass Spectrometry Data

Fischer, Martina, Zilkenat, Susann, Gerlach, Roman G., Wagner, Samuel, Renard, Bernhard Y.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.26 MB

english, 2014

13

A Simple Protocol To Routinely Assess the Uniformity of Proteomics Analyses

Gallien, Sebastien, Bourmaud, Adele, Domon, Bruno

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 944 KB

english, 2014

14

Whey Protein Delays Gastric Emptying and Suppresses Plasma Fatty Acids and Their Metabolites Compared to Casein, Gluten, and Fish Protein

Stanstrup, Jan, Schou, Simon S., Holmer-Jensen, Jens, Hermansen, Kjeld, Dragsted, Lars O.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.40 MB

english, 2014

15

Quantitative Proteomic Profiling of Pleomorphic Human Sarcoma Identifies CLIC1 as a Dominant Pro-Oncogenic Receptor Expressed in Diverse Sarcoma Types

Murray, Euan, Hernychová, Lenka, Scigelova, Michaela, Ho, Jenny, Nekulova, Marta, O’Neill, John Robert, Nenutil, Rudolf, Vesely, Karel, Dundas, Sinclair R., Dhaliwal, Catharine, Henderson, Hannah, Hay

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.30 MB

english, 2014

16

High-Fat Diet Induced Isoform Changes of the Parkinson’s Disease Protein DJ-1

Poschmann, Gereon, Seyfarth, Katrin, Besong Agbo, Daniela, Klafki, Hans-Wolfgang, Rozman, Jan, Wurst, Wolfgang, Wiltfang, Jens, Meyer, Helmut E., Klingenspor, Martin, Stühler, Kai

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 4.35 MB

english, 2014

17

Lipidomics Reveals a Link between CYP1B1 and SCD1 in Promoting Obesity

Li, Fei, Jiang, Changtao, Larsen, Michele C., Bushkofsky, Justin, Krausz, Kristopher W., Wang, Ting, Jefcoate, Colin R., Gonzalez, Frank J.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.73 MB

english, 2014

18

Integrative Network Analysis of the Signaling Cascades in Seedling Leaves of Bread Wheat by Large-Scale Phosphoproteomic Profiling

Lv, Dong-Wen, Ge, Pei, Zhang, Ming, Cheng, Zhi-Wei, Li, Xiao-Hui, Yan, Yue-Ming

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 6.64 MB

english, 2014

19

Serum Metabolomics Study of the Acute Graft Rejection in Human Renal Transplantation Based on Liquid Chromatography–Mass Spectrometry

Zhao, Xinjie, Chen, Jihong, Ye, Lei, Xu, Guowang

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.49 MB

english, 2014

20

S-Nitrosylation Analysis in Brassica juncea Apoplast Highlights the Importance of Nitric Oxide in Cold-Stress Signaling

Sehrawat, Ankita, Deswal, Renu

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 8.85 MB

english, 2014

21

Proteomic Comparison of 3D and 2D Glioma Models Reveals Increased HLA-E Expression in 3D Models is Associated with Resistance to NK Cell-Mediated Cytotoxicity

He, Weiqi, Kuang, Yongqin, Xing, Xuemin, Simpson, Richard J., Huang, Haidong, Yang, Tao, Chen, Jingmin, Yang, Libin, Liu, Enyu, He, Weifeng, Gu, Jianwen

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.02 MB

english, 2014

22

Abundance-Ratio-Based Semiquantitative Analysis of Site-Specific N-Linked Glycopeptides Present in the Plasma of Hepatocellular Carcinoma Patients

Lee, Hyoung-Joo, Cha, Hyun-Jeong, Lim, Jong-Sun, Lee, Sun Hee, Song, Si Young, Kim, Hoguen, Hancock, William S., Yoo, Jong Shin, Paik, Young-Ki

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.75 MB

english, 2014

23

Histone H1 Phosphorylation in Breast Cancer

Harshman, Sean W., Hoover, Michael E., Huang, Chengsi, Branson, Owen E., Chaney, Sarah B., Cheney, Carolyn M., Rosol, Thomas J., Shapiro, Charles L., Wysocki, Vicki H., Huebner, Kay, Freitas, Michael

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.65 MB

english, 2014

24

Discovery of Novel Genes and Gene Isoforms by Integrating Transcriptomic and Proteomic Profiling from Mouse Liver

Wu, Peng, Zhang, Hongyu, Lin, Weiran, Hao, Yunwei, Ren, Liangliang, Zhang, Chengpu, Li, Ning, Wei, Handong, Jiang, Ying, He, Fuchu

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.19 MB

english, 2014

25

Glycopeptide Enrichment Using a Combination of ZIC-HILIC and Cotton Wool for Exploring the Glycoproteome of Wheat Flour Albumins

Dedvisitsakul, Plaipol, Jacobsen, Susanne, Svensson, Birte, Bunkenborg, Jakob, Finnie, Christine, Hägglund, Per

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.19 MB

english, 2014

26

Insulin Increases Phosphorylation of Mitochondrial Proteins in Human Skeletal Muscle in Vivo

Zhao, Xiaolu, Bak, Steffen, Pedersen, Andreas J. T., Jensen, Ole Nørregaard, Højlund, Kurt

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.25 MB

english, 2014

27

Clinical Proteome Informatics Workbench Detects Pathogenic Mutations in Hereditary Amyloidoses

Dasari, Surendra, Theis, Jason D., Vrana, Julie A., Zenka, Roman M., Zimmermann, Michael T., Kocher, Jean-Pierre A., Highsmith, W. Edward, Kurtin, Paul J., Dogan, Ahmet

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.25 MB

english, 2014

28

New Affinity Probe Targeting VEGF Receptors for Kinase Inhibitor Selectivity Profiling by Chemical Proteomics

Ku, Xin, Heinzlmeir, Stephanie, Helm, Dominic, Médard, Guillaume, Kuster, Bernhard

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 4.00 MB

english, 2014

29

Reproducible Ion-Current-Based Approach for 24-Plex Comparison of the Tissue Proteomes of Hibernating versus Normal Myocardium in Swine Models

Qu, Jun, Young, Rebeccah, Page, Brian J., Shen, Xiaomeng, Tata, Nazneen, Li, Jun, Duan, Xiaotao, Fallavollita, James A., Canty, John M.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 5.30 MB

english, 2014

30

Identification of Hypoxia-Regulated Proteins Using MALDI-Mass Spectrometry Imaging Combined with Quantitative Proteomics

Djidja, Marie-Claude, Chang, Joan, Hadjiprocopis, Andreas, Schmich, Fabian, Sinclair, John, Mršnik, Martina, Schoof, Erwin M., Barker, Holly E., Linding, Rune, Jørgensen, Claus, Erler, Janine T.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 9.06 MB

english, 2014

31

Lysine Methylation Mapping of Crenarchaeal DNA-Directed RNA Polymerases by Collision-Induced and Electron-Transfer Dissociation Mass Spectrometry

Azkargorta, Mikel, Wojtas, Magdalena N., Abrescia, Nicola G. A., Elortza, Felix

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 555 KB

english, 2014

32

Rapid and Sustained Systemic Circulation of Conjugated Gut Microbial Catabolites after Single-Dose Black Tea Extract Consumption

van Duynhoven, John, van der Hooft, Justin J. J., van Dorsten, Ferdinand A., Peters, Sonja, Foltz, Martin, Gomez-Roldan, Victoria, Vervoort, Jacques, de Vos, Ric C. H., Jacobs, Doris M.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.64 MB

english, 2014

33

mTor Is a Signaling Hub in Cell Survival: A Mass-Spectrometry-Based Proteomics Investigation

Tang, Zhi, Baykal, Ahmet Tarik, Gao, Hui, Quezada, Hernan Concha, Zhang, Haiyan, Bereczki, Erika, Serhatli, Muge, Baykal, Betul, Acioglu, Cigdem, Wang, Shan, Ioja, Eniko, Ji, Xinying, Zhang, Yan, Guan

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 4.31 MB

english, 2014

34

Quantitative Proteomics of Extracellular Vesicles Released from Human Monocyte-Derived Macrophages upon β-Glucan Stimulation

Cypryk, Wojciech, Öhman, Tiina, Eskelinen, Eeva-Liisa, Matikainen, Sampsa, Nyman, Tuula A.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 4.24 MB

english, 2014

35

Proteomics Identified Overexpression of SET Oncogene Product and Possible Therapeutic Utility of Protein Phosphatase 2A in Alveolar Soft Part Sarcoma

Kubota, Daisuke, Yoshida, Akihiko, Kawai, Akira, Kondo, Tadashi

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 6.42 MB

english, 2014

36

Plasma Metabolite Profiles of Alzheimer’s Disease and Mild Cognitive Impairment

Wang, Gang, Zhou, Yi, Huang, Feng-Jie, Tang, Hui-Dong, Xu, Xu-Hua, Liu, Jia-Jian, Wang, Ying, Deng, Yu-Lei, Ren, Ru-Jing, Xu, Wei, Ma, Jian-Fang, Zhang, Yi-Nan, Zhao, Ai-Hua, Chen, Sheng-Di, Jia, Wei

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 897 KB

english, 2014

37

Hunting for Unexpected Post-Translational Modifications by Spectral Library Searching with Tier-Wise Scoring

Ma, Chun Wai Manson, Lam, Henry

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.81 MB

english, 2014

38

NMR-Based Lipidomic Analysis of Blood Lipoproteins Differentiates the Progression of Coronary Heart Disease

Kostara, Christina E., Papathanasiou, Athanasios, Psychogios, Nikolaos, Cung, Manh Thong, Elisaf, Moses S., Goudevenos, John, Bairaktari, Eleni T.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.40 MB

english, 2014