Volume 13; Issue 7

Journal of Proteome Research

Volume 13; Issue 7

1

Proteomic Profiles of Five Strains of Oxygenic Photosynthetic Cyanobacteria of the Genus Cyanothece

Aryal, Uma K., Callister, Stephen J., McMahon, Benjamin H., McCue, Lee-Ann, Brown, Joseph, Stöckel, Jana, Liberton, Michelle, Mishra, Sujata, Zhang, Xiaohui, Nicora, Carrie D., Angel, Thomas E., Koppe

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.13 MB

english, 2014

2

Proteomic Analysis of the 26S Proteasome Reveals Its Direct Interaction with Transit Peptides of Plastid Protein Precursors for Their Degradation

Sako, Kaori, Yanagawa, Yuki, Kanai, Tomoyuki, Sato, Takeo, Seki, Motoaki, Fujiwara, Masayuki, Fukao, Yoichiro, Yamaguchi, Junji

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.06 MB

english, 2014

3

Large-Scale Identification of Phosphorylation Sites for Profiling Protein Kinase Selectivity

Imamura, Haruna, Sugiyama, Naoyuki, Wakabayashi, Masaki, Ishihama, Yasushi

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.03 MB

english, 2014

4

Bioinformatic and Proteomic Analysis of Bulk Histones Reveals PTM Crosstalk and Chromatin Features

Zhang, Chunchao, Gao, Shan, Molascon, Anthony J., Wang, Zhe, Gorovsky, Martin A., Liu, Yifan, Andrews, Philip C.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.04 MB

english, 2014

5

Comparative Proteomics of Short and Tall Glandular Trichomes of Nicotiana tabacum Reveals Differential Metabolic Activities

Sallets, Adrienne, Beyaert, Maxime, Boutry, Marc, Champagne, Antoine

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 406 KB

english, 2014

6

Application of Multi-Omics Techniques for Bioprocess Design and Optimization in Chinese Hamster Ovary Cells

Farrell, Amy, McLoughlin, Niaobh, Milne, John J., Marison, Ian W., Bones, Jonathan

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.15 MB

english, 2014

7

Characterization of Binding Epitopes of CA125 Monoclonal Antibodies

Marcos-Silva, Lara, Narimatsu, Yoshiki, Halim, Adnan, Campos, Diana, Yang, Zhang, Tarp, Mads A., Pereira, Pedro J. B., Mandel, Ulla, Bennett, Eric P., Vakhrushev, Sergey Y., Levery, Steven B., David,

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.12 MB

english, 2014

8

A Kinase-Phosphatase Signaling Module with BSK8 and BSL2 Involved in Regulation of Sucrose-Phosphate Synthase

Wu, XuNa, Sklodowski, Kamil, Encke, Bea, Schulze, Waltraud X.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.25 MB

english, 2014

9

Chromosome-centric Human Proteome Project (C-HPP): Chromosome 12

Chaiyarit, Sakdithep, Singhto, Nilubon, Chen, Yi-Ju, Cheng, Chia-Ying, Chiangjong, Wararat, Kanlaya, Rattiyaporn, Lam, Henry H. N., Peerapen, Paleerath, Sung, Ting-Yi, Tipthara, Phornpimon, Pandey, Ak

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.96 MB

english, 2014

10

Chromosome-centric Human Proteome Project: Deciphering Proteins Associated with Glioma and Neurodegenerative Disorders on Chromosome 12

Gupta, Manoj Kumar, Jayaram, Savita, Madugundu, Anil K., Chavan, Sandip, Advani, Jayshree, Pandey, Akhilesh, Thongboonkerd, Visith, Sirdeshmukh, Ravi

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.05 MB

english, 2014

11

Identification and Functional Validation of RAD23B as a Potential Protein in Human Breast Cancer Progression

Linge, Annett, Maurya, Priyanka, Friedrich, Katrin, Baretton, Gustavo B., Kelly, Shane, Henry, Michael, Clynes, Martin, Larkin, Annemarie, Meleady, Paula

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.71 MB

english, 2014

12

Unraveling the Processing and Activation of Snake Venom Metalloproteinases

Portes-Junior, José A., Yamanouye, Norma, Carneiro, Sylvia M., Knittel, Paloma S., Sant’Anna, Sávio S., Nogueira, Fabio C. S., Junqueira, Magno, Magalhães, Geraldo S., Domont, Gilberto B., Moura-da-Si

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 5.39 MB

english, 2014

13

De Novo Protein Sequencing by Combining Top-Down and Bottom-Up Tandem Mass Spectra

Liu, Xiaowen, Dekker, Lennard J. M., Wu, Si, Vanduijn, Martijn M., Luider, Theo M., Tolić, Nikola, Kou, Qiang, Dvorkin, Mikhail, Alexandrova, Sonya, Vyatkina, Kira, Paša-Tolić, Ljiljana, Pevzner, Pave

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 803 KB

english, 2014

14

Comparative Exoprotein Profiling of Different Staphylococcus epidermidis Strains Reveals Potential Link between Nonclassical Protein Export and Virulence

Siljamäki, Pia, Varmanen, Pekka, Kankainen, Matti, Sukura, Antti, Savijoki, Kirsi, Nyman, Tuula A.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.48 MB

english, 2014

15

Global Protein–Protein Interaction Network of Rice Sheath Blight Pathogen

Lei, Ding, Lin, Runmao, Yin, Chuanchun, Li, Ping, Zheng, Aiping

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 5.55 MB

english, 2014

16

Metabolomics Study of Hepatocellular Carcinoma: Discovery and Validation of Serum Potential Biomarkers by Using Capillary Electrophoresis–Mass Spectrometry

Zeng, Jun, Yin, Peiyuan, Tan, Yexiong, Dong, Liwei, Hu, Chunxiu, Huang, Qiang, Lu, Xin, Wang, Hongyang, Xu, Guowang

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.50 MB

english, 2014

17

Serum and Adipose Tissue Amino Acid Homeostasis in the Metabolically Healthy Obese

Badoud, Flavia, Lam, Karen P., DiBattista, Alicia, Perreault, Maude, Zulyniak, Michael A., Cattrysse, Bradley, Stephenson, Susan, Britz-McKibbin, Philip, Mutch, David M.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.52 MB

english, 2014

18

Estimating Influence of Cofragmentation on Peptide Quantification and Identification in iTRAQ Experiments by Simulating Multiplexed Spectra

Li, Honglan, Hwang, Kyu-Baek, Mun, Dong-Gi, Kim, Hokeun, Lee, Hangyeore, Lee, Sang-Won, Paek, Eunok

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.99 MB

english, 2014

19

Phosphorylation of Serine 106 in Asef2 Regulates Cell Migration and Adhesion Turnover

Evans, J. Corey, Hines, Kelly M., Forsythe, Jay G., Erdogan, Begum, Shi, Mingjian, Hill, Salisha, Rose, Kristie L., McLean, John A., Webb, Donna J.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 6.57 MB

english, 2014

20

Additional Precursor Purification in Isobaric Mass Tagging Experiments by Traveling Wave Ion Mobility Separation (TWIMS)

Shliaha, Pavel V., Jukes-Jones, Rebekah, Christoforou, Andy, Fox, Jonathan, Hughes, Chris, Langridge, James, Cain, Kelvin, Lilley, Kathryn S.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.20 MB

english, 2014

21

Identification and Characterization of Proteins Encoded by Chromosome 12 as Part of Chromosome-centric Human Proteome Project

Manda, Srikanth Srinivas, Nirujogi, Raja Sekhar, Pinto, Sneha Maria, Kim, Min-Sik, Datta, Keshava K., Sirdeshmukh, Ravi, Prasad, T. S. Keshava, Thongboonkerd, Visith, Pandey, Akhilesh, Gowda, Harsha

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.52 MB

english, 2014

22

The C-Score: A Bayesian Framework to Sharply Improve Proteoform Scoring in High-Throughput Top Down Proteomics

LeDuc, Richard D., Fellers, Ryan T., Early, Bryan P., Greer, Joseph B., Thomas, Paul M., Kelleher, Neil L.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.75 MB

english, 2014

23

Novel Multimetabolite Prediction of Walnut Consumption by a Urinary Biomarker Model in a Free-Living Population: the PREDIMED Study

Garcia-Aloy, Mar, Llorach, Rafael, Urpi-Sarda, Mireia, Tulipani, Sara, Estruch, Ramon, Martínez-González, Miguel A., Corella, Dolores, Fitó, Montserrat, Ros, Emilio, Salas-Salvadó, Jordi, Andres-Lacue

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.08 MB

english, 2014

24

Protein Inference Using Peptide Quantification Patterns

Lukasse, Pieter N. J., America, Antoine H. P.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.56 MB

english, 2014

25

Proteomic Analysis of Mouse Testis Reveals Perfluorooctanoic Acid-Induced Reproductive Dysfunction via Direct Disturbance of Testicular Steroidogenic Machinery

Zhang, Hongxia, Lu, Yin, Luo, Bin, Yan, Shengmin, Guo, Xuejiang, Dai, Jiayin

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.97 MB

english, 2014

26

Proteomic Quantification and Site-Mapping of S -Nitrosylated Proteins Using Isobaric iodoTMT Reagents

Qu, Zhe, Meng, Fanjun, Bomgarden, Ryan D., Viner, Rosa I., Li, Jilong, Rogers, John C., Cheng, Jianlin, Greenlief, C. Michael, Cui, Jiankun, Lubahn, Dennis B., Sun, Grace Y., Gu, Zezong

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 4.87 MB

english, 2014

27

Dissection of a Novel Autocrine Signaling Pathway via Quantitative Secretome and Interactome Mapping

Larivière, Nathalie, Law, Jennifer, Trinkle-Mulcahy, Laura

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 4.50 MB

english, 2014

28

The Role and Importance of Glycosylation of Acute Phase Proteins with Focus on Alpha-1 Antitrypsin in Acute and Chronic Inflammatory Conditions

McCarthy, Cormac, Saldova, Radka, Wormald, Mark R, Rudd, Pauline M., McElvaney, Noel G., Reeves, Emer P.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.91 MB

english, 2014

29

Systematic Analysis of the Lysine Acetylome in Vibrio parahemolyticus

Pan, Jianyi, Ye, Zhicang, Cheng, Zhongyi, Peng, Xiaojun, Wen, Liangyou, Zhao, Fukun

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 672 KB

english, 2014

30

Age-Related Increase in Alanine Aminotransferase Correlates with Elevated Levels of Plasma Amino Acids, Decanoylcarnitine, Lp-PLA 2 Activity, Oxidative Stress, and Arterial Stiffness

Jung, Saem, Kim, Oh Yoen, Kim, Minjoo, Song, Juheui, Lee, Sang-Hyun, Lee, Jong Ho

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.75 MB

english, 2014

31

jqcML: An Open-Source Java API for Mass Spectrometry Quality Control Data in the qcML Format

Bittremieux, Wout, Kelchtermans, Pieter, Valkenborg, Dirk, Martens, Lennart, Laukens, Kris

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 303 KB

english, 2014

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