Volume 14; Issue 4

Journal of Proteome Research

Volume 14; Issue 4

1

Senescent Human Fibroblasts Show Increased Glycolysis and Redox Homeostasis with Extracellular Metabolomes That Overlap with Those of Irreparable DNA Damage, Aging, and Disease

James, Emma L., Michalek, Ryan D., Pitiyage, Gayani N., de Castro, Alice M., Vignola, Katie S., Jones, Janice, Mohney, Robert P., Karoly, Edward D., Prime, Stephen S., Parkinson, Eric Kenneth

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.93 MB

english, 2015

2

High-Performance Low-Cost Antibody Microarrays Using Enzyme-Mediated Silver Amplification

Zhou, Gina, Bergeron, Sebastien, Juncker, David

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 3.14 MB

english, 2015

3

N-Linked Glycoproteome Profiling of Seedling Leaf in Brachypodium distachyon L.

Zhang, Ming, Chen, Guan-Xing, Lv, Dong-Wen, Li, Xiao-Hui, Yan, Yue-Ming

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 2.17 MB

english, 2015

4

Metagenomic and Metabolomic Analysis of the Toxic Effects of Trichloroacetamide-Induced Gut Microbiome and Urine Metabolome Perturbations in Mice

Zhang, Yan, Zhao, Fuzheng, Deng, Yongfeng, Zhao, Yanping, Ren, Hongqiang

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 2.01 MB

english, 2015

5

Global Analysis of Salmonella Alternative Sigma Factor E on Protein Translation

Li, Jie, Nakayasu, Ernesto S., Overall, Christopher C., Johnson, Rudd C., Kidwai, Afshan S., McDermott, Jason E., Ansong, Charles, Heffron, Fred, Cambronne, Eric D., Adkins, Joshua N.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.03 MB

english, 2015

6

Identification of HPV Integration and Gene Mutation in HeLa Cell Line by Integrated Analysis of RNA-Seq and MS/MS Data

Sun, Han, Chen, Chen, Lian, Baofeng, Zhang, Menghuan, Wang, Xiaojing, Zhang, Bing, Li, Yixue, Yang, Pengyuan, Xie, Lu

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 738 KB

english, 2015

7

A Decoy-Free Approach to the Identification of Peptides

Gonnelli, Giulia, Stock, Michiel, Verwaeren, Jan, Maddelein, Davy, De Baets, Bernard, Martens, Lennart, Degroeve, Sven

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.08 MB

english, 2015

8

Comparative Proteomic Analysis of Developing Rhizomes of the Ancient Vascular Plant Equisetum hyemale and Different Monocot Species

Salvato, Fernanda, Balbuena, Tiago S., Nelson, William, Rao, R. Shyama Prasad, He, Ruifeng, Soderlund, Carol A., Gang, David R., Thelen, Jay J.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.76 MB

english, 2015

9

Potato Aphid Salivary Proteome: Enhanced Salivation Using Resorcinol and Identification of Aphid Phosphoproteins

Chaudhary, Ritu, Atamian, Hagop S., Shen, Zhouxin, Briggs, Steven P., Kaloshian, Isgouhi

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 694 KB

english, 2015

10

Newborn Meconium and Urinary Metabolome Response to Maternal Gestational Diabetes Mellitus: A Preliminary Case–Control Study

Peng, Siyuan, Zhang, Jie, Liu, Liangpo, Zhang, Xueqin, Huang, Qingyu, Alamdar, Ambreen, Tian, Meiping, Shen, Heqing

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.37 MB

english, 2015

11

Correction to “Analyzing the First Drafts of the Human Proteome”

Ezkurdia, Iakes, Vázquez, Jesús, Valencia, Alfonso, Tress, Michael

Journal:

Journal of Proteome Research

Year:

2015

File:

PDF, 113 KB

2015

12

Validation of a Novel Shotgun Proteomic Workflow for the Discovery of Protein–Protein Interactions: Focus on ZNF521

Bernaudo, Francesca, Monteleone, Francesca, Mesuraca, Maria, Krishnan, Shibu, Chiarella, Emanuela, Scicchitano, Stefania, Cuda, Giovanni, Morrone, Giovanni, Bond, Heather M., Gaspari, Marco

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 3.32 MB

english, 2015

13

Proteomic Detection of Immunoglobulin Light Chain Variable Region Peptides from Amyloidosis Patient Biopsies

Dasari, Surendra, Theis, Jason D., Vrana, Julie A., Meureta, Oana M., Quint, Patrick S., Muppa, Prasuna, Zenka, Roman M., Tschumper, Renee C., Jelinek, Diane F., Davila, Jaime I., Sarangi, Vivekananda

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.01 MB

english, 2015

14

Most Highly Expressed Protein-Coding Genes Have a Single Dominant Isoform

Ezkurdia, Iakes, Rodriguez, Jose Manuel, Carrillo-de Santa Pau, Enrique, Vázquez, Jesús, Valencia, Alfonso, Tress, Michael L.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.39 MB

english, 2015

15

Large-Scale Identification of Core-Fucosylated Glycopeptide Sites in Pancreatic Cancer Serum Using Mass Spectrometry

Tan, Zhijing, Yin, Haidi, Nie, Song, Lin, Zhenxin, Zhu, Jianhui, Ruffin, Mack T., Anderson, Michelle A., Simeone, Diane M., Lubman, David M.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.69 MB

english, 2015

16

MS1-Based Label-Free Proteomics Using a Quadrupole Orbitrap Mass Spectrometer

Shalit, Tali, Elinger, Dalia, Savidor, Alon, Gabashvili, Alexandra, Levin, Yishai

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.40 MB

english, 2015

17

Characterization of 14-3-3 Isoforms Expressed in the Echinococcus granulosus Pathogenic Larval Stage

Teichmann, Aline, Vargas, Daiani M., Monteiro, Karina M., Meneghetti, Bruna V., Dutra, Cristine S., Paredes, Rodolfo, Galanti, Norbel, Zaha, Arnaldo, Ferreira, Henrique B.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 2.38 MB

english, 2015

18

Quantitative Proteomics Reveals a Novel Role of Karyopherin Alpha 2 in Cell Migration through the Regulation of Vimentin–pErk Protein Complex Levels in Lung Cancer

Wang, Chun-I, Wang, Chih-Liang, Wu, Yi-Cheng, Feng, Hsiang-Pu, Liu, Pei-Jun, Chang, Yu-Sun, Yu, Jau-Song, Yu, Chia-Jung

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 611 KB

english, 2015

19

Elevated AKAP12 in Paclitaxel-Resistant Serous Ovarian Cancer Cells Is Prognostic and Predictive of Poor Survival in Patients

Bateman, Nicholas W., Jaworski, Elizabeth, Ao, Wei, Wang, Guisong, Litzi, Tracy, Dubil, Elizabeth, Marcus, Charlotte, Conrads, Kelly A., Teng, Pang-ning, Hood, Brian L., Phippen, Neil T., Vasicek, Lis

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 2.01 MB

english, 2015

20

PepShell: Visualization of Conformational Proteomics Data

Vandermarliere, Elien, Maddelein, Davy, Hulstaert, Niels, Stes, Elisabeth, Di Michele, Michela, Gevaert, Kris, Jacoby, Edgar, Brehmer, Dirk, Martens, Lennart

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.44 MB

english, 2015

21

Occurrence of a Multimeric High-Molecular-Weight Glyceraldehyde-3-phosphate Dehydrogenase in Human Serum

Kunjithapatham, Rani, Geschwind, Jean-Francois, Devine, Lauren, Boronina, Tatiana N., O’Meally, Robert N., Cole, Robert N., Torbenson, Michael S., Ganapathy-Kanniappan, Shanmugasundaram

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 8.44 MB

english, 2015

22

Comparison of GC-MS and GC×GC-MS in the Analysis of Human Serum Samples for Biomarker Discovery

Winnike, Jason H., Wei, Xiaoli, Knagge, Kevin J., Colman, Steven D., Gregory, Simon G., Zhang, Xiang

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.24 MB

english, 2015

23

Chrono-Proteomics of Human Saliva: Variations of the Salivary Proteome during Human Development

Messana, Irene, Cabras, Tiziana, Iavarone, Federica, Manconi, Barbara, Huang, Liling, Martelli, Claudia, Olianas, Alessandra, Sanna, Maria Teresa, Pisano, Elisabetta, Sanna, Monica, Arba, Morena, D’Al

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 2.28 MB

english, 2015

24

Modulation of Colon Cancer by Nutmeg

Li, Fei, Yang, Xiu-Wei, Krausz, Kristopher W., Nichols, Robert G., Xu, Wei, Patterson, Andrew D., Gonzalez, Frank J.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.38 MB

english, 2015

25

Deregulated Tyrosine–Phenylalanine Metabolism in Pulmonary Tuberculosis Patients

Das, Mrinal Kumar, Bishwal, Subasa Chandra, Das, Aleena, Dabral, Deepti, Badireddy, Vinod Kumar, Pandit, Bhaswati, Varghese, George M., Nanda, Ranjan Kumar

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 2.77 MB

english, 2015

26

Regulation of SUMO2 Target Proteins by the Proteasome in Human Cells Exposed to Replication Stress

Bursomanno, Sara, McGouran, Joanna F., Kessler, Benedikt M., Hickson, Ian D., Liu, Ying

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 5.95 MB

english, 2015

27

Proteomics Analysis of EV71-Infected Cells Reveals the Involvement of Host Protein NEDD4L in EV71 Replication

Kuo, Rei-Lin, Lin, Ya-Han, Wang, Robert Yung-Liang, Hsu, Chia-Wei, Chiu, Yi-Ting, Huang, Hsing-I, Kao, Li-Ting, Yu, Jau-Song, Shih, Shin-Ru, Wu, Chih-Ching

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 6.08 MB

english, 2015

28

Metabolic Phenotyping of an Adoptive Transfer Mouse Model of Experimental Colitis and Impact of Dietary Fish Oil Intake

Martin, Francois-Pierre J., Lichti, Pia, Bosco, Nabil, Brahmbhatt, Viral, Oliveira, Manuel, Haller, Dirk, Benyacoub, Jalil

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.81 MB

english, 2015

29

Host–Pathogen Interaction Profiling Using Self-Assembling Human Protein Arrays

Yu, Xiaobo, Decker, Kimberly B., Barker, Kristi, Neunuebel, M. Ramona, Saul, Justin, Graves, Morgan, Westcott, Nathan, Hang, Howard, LaBaer, Joshua, Qiu, Ji, Machner, Matthias P.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 9.50 MB

english, 2015

30

Label-Free Proteomics Uncovers Energy Metabolism and Focal Adhesion Regulations Responsive for Endometrium Receptivity

Chen, Qian, Zhang, Aijun, Yu, Feng, Gao, Jing, Liu, Yue, Yu, Chengli, Zhou, Hu, Xu, Chen

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.94 MB

english, 2015

31

Skewed Fc Glycosylation Profiles of Anti-proteinase 3 Immunoglobulin G1 Autoantibodies from Granulomatosis with Polyangiitis Patients Show Low Levels of Bisection, Galactosylation, and Sialylation

Wuhrer, Manfred, Stavenhagen, Kathrin, Koeleman, Carolien A. M., Selman, Maurice H. J., Harper, Lorraine, Jacobs, Bart C., Savage, Caroline O. S., Jefferis, Roy, Deelder, André M., Morgan, Matthew

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 837 KB

english, 2015

32

Systematic Metabolomic Analysis of Eicosanoids after Omega-3 Polyunsaturated Fatty Acid Supplementation by a Highly Specific Liquid Chromatography–Tandem Mass Spectrometry-Based Method

Zhang, Xu, Yang, Nan, Ai, Ding, Zhu, Yi

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 485 KB

english, 2015

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