Volume 14; Issue 6

Journal of Proteome Research

Volume 14; Issue 6

1

Proteomic Signature of Endothelial Dysfunction Identified in the Serum of Acute Ischemic Stroke Patients by the iTRAQ-Based LC–MS Approach

Sharma, Rakesh, Gowda, Harsha, Chavan, Sandip, Advani, Jayshree, Kelkar, Dhanashree, Kumar, G. S. Sameer, Bhattacharjee, Mitali, Chaerkady, Raghothama, Prasad, T. S. Keshava, Pandey, Akhilesh, Nagaraj

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.73 MB

english, 2015

2

Functional Proteomics Study Reveals SUMOylation of TFII-I is Involved in Liver Cancer Cell Proliferation

Tu, Jun, Chen, Yalan, Cai, Lili, Xu, Changming, Zhang, Yang, Chen, Yanmei, Zhang, Chen, Zhao, Jian, Cheng, Jinke, Xie, Hongwei, Zhong, Fan, He, Fuchu

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.74 MB

english, 2015

3

The CPTAC Data Portal: A Resource for Cancer Proteomics Research

Edwards, Nathan J., Oberti, Mauricio, Thangudu, Ratna R., Cai, Shuang, McGarvey, Peter B., Jacob, Shine, Madhavan, Subha, Ketchum, Karen A.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 901 KB

english, 2015

4

Can “Normal” Protein Expression Ranges Be Estimated with High-Throughput Proteomics?

Higdon, Roger, Kolker, Eugene

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.36 MB

english, 2015

5

Metabonomics Reveals Metabolite Changes in Biliary Atresia Infants

Zhou, Kejun, Xie, Guoxiang, Wang, Jun, Zhao, Aihua, Liu, Jiajian, Su, Mingming, Ni, Yan, Zhou, Ying, Pan, Weihua, Che, Yanran, Zhang, Ting, Xiao, Yongtao, Wang, Yang, Wen, Jie, Jia, Wei, Cai, Wei

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 906 KB

english, 2015

6

A Comparison of the Mouse and Human Lipoproteome: Suitability of the Mouse Model for Studies of Human Lipoproteins

Gordon, Scott M., Li, Hailong, Zhu, Xiaoting, Shah, Amy S., Lu, L. Jason, Davidson, W. Sean

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 831 KB

english, 2015

7

Organ-Specific Analysis of Mahonia Using Gel-Free/Label-Free Proteomic Technique

Zhu, Wei, Hu, Jin, Wang, Xin, Tian, Jingkui, Komatsu, Setsuko

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 2.66 MB

english, 2015

8

Mass Spectrometry-Based Proteomics Identification of Enteropathogenic Escherichia coli Pedestal Constituents

Law, Hong T., Chua, Michael, Moon, Kyung-Mee, Foster, Leonard J., Guttman, Julian A.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 538 KB

english, 2015

9

Identification and Validation of Differential Phosphorylation Sites of the Nuclear FOXL2 Protein as Potential Novel Biomarkers for Adult-Type Granulosa Cell Tumors

Suh, Dae-Shik, Oh, Hoon Kyu, Kim, Jae-Hong, Park, Seeun, Shin, Eunkyoung, Lee, Kangseok, Kim, Yong-Hak, Bae, Jeehyeon

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 4.00 MB

english, 2015

10

Proteomic Profiling of Paclitaxel Treated Cells Identifies a Novel Mechanism of Drug Resistance Mediated by PDCD4

Xu, Hui, Dephoure, Noah, Sun, Huiying, Zhang, Haiyuan, Fan, Fangfang, Liu, Jiawei, Ning, Xuelian, Dai, Shaochun, Liu, Baogang, Gao, Min, Fu, Songbin, Gygi, Steven P., Zhou, Chunshui

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 923 KB

english, 2015

11

Proteomic Analysis of the Endosperm Ontogeny of Jatropha curcas L. Seeds

Shah, Mohibullah, Soares, Emanoella L., Carvalho, Paulo C., Soares, Arlete A., Domont, Gilberto B., Nogueira, Fábio C.S., Campos, Francisco A. P.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.72 MB

english, 2015

12

Exploring Metabolic Profile Differences between Colorectal Polyp Patients and Controls Using Seemingly Unrelated Regression

Chen, Chen, Deng, Lingli, Wei, Siwei, Nagana Gowda, G. A., Gu, Haiwei, Chiorean, Elena G., Abu Zaid, Mohammad, Harrison, Marietta L., Pekny, Joseph F., Loehrer, Patrick J., Zhang, Dabao, Zhang, Min, R

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 424 KB

english, 2015

13

Mass-Spectrometry-Based Molecular Characterization of Extracellular Vesicles: Lipidomics and Proteomics

Kreimer, Simion, Belov, Arseniy M., Ghiran, Ionita, Murthy, Shashi K., Frank, David A., Ivanov, Alexander R.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.06 MB

english, 2015

14

Low-pH Solid-Phase Amino Labeling of Complex Peptide Digests with TMTs Improves Peptide Identification Rates for Multiplexed Global Phosphopeptide Analysis

Böhm, Gitte, Prefot, Petra, Jung, Stephan, Selzer, Stefan, Mitra, Vikram, Britton, David, Kuhn, Karsten, Pike, Ian, Thompson, Andrew H.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.50 MB

english, 2015

15

Phosphoproteome Analysis Links Protein Phosphorylation to Cellular Remodeling and Metabolic Adaptation during Magnaporthe oryzae Appressorium Development

Franck, William L., Gokce, Emine, Randall, Shan M., Oh, Yeonyee, Eyre, Alex, Muddiman, David C., Dean, Ralph A.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 2.28 MB

english, 2015

16

Screening, Verification, and Optimization of Biomarkers for Early Prediction of Cardiotoxicity Based on Metabolomics

Li, Yubo, Ju, Liang, Hou, Zhiguo, Deng, Haoyue, Zhang, Zhenzhu, Wang, Lei, Yang, Zhen, Yin, Jia, Zhang, Yanjun

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.63 MB

english, 2015

17

Venom Proteomics of Indonesian King Cobra, Ophiophagus hannah : Integrating Top-Down and Bottom-Up Approaches

Petras, Daniel, Heiss, Paul, Süssmuth, Roderich D., Calvete, Juan J.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 5.53 MB

english, 2015

18

Human Basal Tear Peptidome Characterization by CID, HCD, and ETD Followed by in Silico and in Vitro Analyses for Antimicrobial Peptide Identification

Azkargorta, Mikel, Soria, Javier, Ojeda, Claudia, Guzmán, Fanny, Acera, Arantxa, Iloro, Ibon, Suárez, Tatiana, Elortza, Felix

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.30 MB

english, 2015

19

High-Throughput Microbore UPLC–MS Metabolic Phenotyping of Urine for Large-Scale Epidemiology Studies

Gray, Nicola, Lewis, Matthew R., Plumb, Robert S., Wilson, Ian D., Nicholson, Jeremy K.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.04 MB

english, 2015

20

Impact of Protease on Ultraviolet Photodissociation Mass Spectrometry for Bottom-up Proteomics

Greer, Sylvester M., Parker, W. Ryan, Brodbelt, Jennifer S.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.12 MB

english, 2015

21

Prediction of Gestational Diabetes through NMR Metabolomics of Maternal Blood

Pinto, Joana, Almeida, Lara M., Martins, Ana S., Duarte, Daniela, Barros, António S., Galhano, Eulália, Pita, Cristina, Almeida, Maria do Céu, Carreira, Isabel M., Gil, Ana M.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.86 MB

english, 2015

22

Chemical Proteomics Uncovers EPHA2 as a Mechanism of Acquired Resistance to Small Molecule EGFR Kinase Inhibition

Koch, Heiner, Busto, M. Estela Del Castillo, Kramer, Karl, Médard, Guillaume, Kuster, Bernhard

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.31 MB

english, 2015

23

Upregulation of Glycans Containing 3′ Fucose in a Subset of Pancreatic Cancers Uncovered Using Fusion-Tagged Lectins

Singh, Sudhir, Pal, Kuntal, Yadav, Jessica, Tang, Huiyuan, Partyka, Katie, Kletter, Doron, Hsueh, Peter, Ensink, Elliot, KC, Birendra, Hostetter, Galen, Xu, H. Eric, Bern, Marshall, Smith, David F., M

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 6.29 MB

english, 2015

24

NMR/MS Translator for the Enhanced Simultaneous Analysis of Metabolomics Mixtures by NMR Spectroscopy and Mass Spectrometry: Application to Human Urine

Bingol, Kerem, Brüschweiler, Rafael

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 677 KB

english, 2015

25

Proteomic Profiling of 16 Cereal Grains and the Application of Targeted Proteomics To Detect Wheat Contamination

Colgrave, Michelle L., Goswami, Hareshwar, Byrne, Keren, Blundell, Malcolm, Howitt, Crispin A., Tanner, Gregory J.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 2.97 MB

english, 2015

26

Quantitative Proteomics Analysis of Camelina sativa Seeds Overexpressing the AGG3 Gene to Identify the Proteomic Basis of Increased Yield and Stress Tolerance

Alvarez, Sophie, Roy Choudhury, Swarup, Sivagnanam, Kumaran, Hicks, Leslie M., Pandey, Sona

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 4.21 MB

english, 2015

27

Quantitative Mass Spectrometry Measurements Reveal Stoichiometry of Principal Postsynaptic Density Proteins

Lowenthal, Mark S., Markey, Sanford P., Dosemeci, Ayse

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.56 MB

english, 2015

28

Summarization vs Peptide-Based Models in Label-Free Quantitative Proteomics: Performance, Pitfalls, and Data Analysis Guidelines

Goeminne, Ludger J. E., Argentini, Andrea, Martens, Lennart, Clement, Lieven

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.15 MB

english, 2015

29

Low Abundant N -linked Glycosylation in Hen Egg White Lysozyme Is Localized at Nonconsensus Sites

Asperger, Arndt, Marx, Kristina, Albers, Christian, Molin, Laura, Pinato, Odra

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 3.21 MB

english, 2015

30

ESI–MS/MS and MALDI-IMS Localization Reveal Alterations in Phosphatidic Acid, Diacylglycerol, and DHA in Glioma Stem Cell Xenografts

Wildburger, Norelle C., Wood, Paul L., Gumin, Joy, Lichti, Cheryl F., Emmett, Mark R., Lang, Frederick F., Nilsson, Carol L.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 4.48 MB

english, 2015

31

Identification and Functional Characterizations of N-Terminal α- N -Methylation and Phosphorylation of Serine 461 in Human Poly(ADP-ribose) Polymerase 3

Dai, Xiaoxia, Rulten, Stuart L., You, Changjun, Caldecott, Keith W., Wang, Yinsheng

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 3.78 MB

english, 2015

32

Clusterin Glycopeptide Variant Characterization Reveals Significant Site-Specific Glycan Changes in the Plasma of Clear Cell Renal Cell Carcinoma

Gbormittah, Francisca O., Bones, Jonathan, Hincapie, Marina, Tousi, Fateme, Hancock, William S., Iliopoulos, Othon

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 2.77 MB

english, 2015

33

Human Metabolic Responses to Chronic Environmental Polycyclic Aromatic Hydrocarbon Exposure by a Metabolomic Approach

Wang, Zhonghua, Zheng, Yajie, Zhao, Baoxin, Zhang, Yanping, Liu, Zhe, Xu, Jing, Chen, Yanhua, Yang, Zhao, Wang, Fenfen, Wang, Huiqing, He, Jiuming, Zhang, Ruiping, Abliz, Zeper

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.83 MB

english, 2015

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