Volume 5; Issue 4

Journal of Proteome Research

Volume 5; Issue 4

1

Proteomic Analysis of the Mode of Antibacterial Action of Silver Nanoparticles

Lok, Chun-Nam, Ho, Chi-Ming, Chen, Rong, He, Qing-Yu, Yu, Wing-Yiu, Sun, Hongzhe, Tam, Paul Kwong-Hang, Chiu, Jen-Fu, Che, Chi-Ming

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 379 KB

english, 2006

2

Modification-Specific Proteomics of Plasma Membrane Proteins: Identification and Characterization of Glycosylphosphatidylinositol-Anchored Proteins Released upon Phospholipase D Treatment

Elortza, Felix, Mohammed, Shabaz, Bunkenborg, Jakob, Foster, Leonard J., Nühse, Thomas S., Brodbeck, Urs, Peck, Scott C., Jensen, Ole N.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 276 KB

english, 2006

3

Modular Stop and Go Extraction Tips with Stacked Disks for Parallel and Multidimensional Peptide Fractionation in Proteomics

Ishihama, Yasushi, Rappsilber, Juri, Mann, Matthias

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 677 KB

english, 2006

4

Secretory Protein Enrichment and Analysis: An Optimized Approach Applied on Cancer Cell Lines Using 2D LC−MS/MS

Mbeunkui, Flaubert, Fodstad, Oystein, Pannell, Lewis K.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 283 KB

english, 2006

5

Detection and Identification of Protein Isoforms Using Cluster Analysis of MALDI−MS Mass Spectra

Alm, Rikard, Johansson, Peter, Hjernø, Karin, Emanuelsson, Cecilia, Ringnér, Markus, Häkkinen, Jari

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 797 KB

english, 2006

6

Molecular Profiling of Hepatocellular Carcinoma in Mice with a Chronic Deficiency of Hepatic S -Adenosylmethionine: Relevance in Human Liver Diseases

Santamaría, Enrique, Muñoz, Javier, Fernández-Irigoyen, Joaquín, Sesma, Laura, Mora, María I., Berasain, Carmen, Lu, Shelly C., Mato, José M., Prieto, Jesús, Avila, Matías A., Corrales, Fernando J.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 466 KB

english, 2006

7

Metabonomic Study of Aristolochic Acid-Induced Nephrotoxicity in Rats

Chen, Minjun, Su, Mingming, Zhao, Liping, Jiang, Jian, Liu, Ping, Cheng, Jiye, Lai, Yijiang, Liu, Yumin, Jia, Wei

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 1.03 MB

english, 2006

8

Epithelial Proteomics in Multiple Organs and Tissues: Similarities and Variations between Cells, Organs, and Diseases

Zhao, Hong, Adler, Kenneth B., Bai, Chunxue, Tang, Fadi, Wang, Xiangdong

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 323 KB

english, 2006

9

Beyond Linker Histones and High Mobility Group Proteins: Global Profiling of Perchloric Acid Soluble Proteins

Zougman, Alexandre, Wiśniewski, Jacek R.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 760 KB

english, 2006

10

Conservation of Intrinsic Disorder in Protein Domains and Families: II. Functions of Conserved Disorder

Chen, Jessica Walton, Romero, Pedro, Uversky, Vladimir N., Dunker, A. Keith

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 657 KB

english, 2006

11

Proteomic Analysis Reveals Novel Molecules Involved in Insulin Signaling Pathway

Wang, Yiguo, Li, Rongxia, Du, Dan, Zhang, Chenyi, Yuan, Haixin, Zeng, Rong, Chen, Zhengjun

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 522 KB

english, 2006

12

Research Profile: Subcellular fractionation reveals proteins involved in insulin signaling

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 74 KB

english, 2006

13

Pilot Study Using SELDI-TOF−MS Based Proteomic Profile for the Identification of Diagnostic Biomarkers of Thyroid Proliferative Diseases

Suriano, R., Lin, Y., Ashok, B. T., Schaefer, S. D., Schantz, S. P., Geliebter, J., Tiwari, R. K.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 507 KB

english, 2006

14

A Chick Retinal Proteome Database and Differential Retinal Protein Expressions during Early Ocular Development

Lam, Thomas C., Li, King-Kit, Lo, Samuel C. L., Guggenheim, Jeremy A., To, Chi Ho

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 792 KB

english, 2006

15

Metabolic Profiling of Plasma from Discordant Schizophrenia Twins: Correlation between Lipid Signals and Global Functioning in Female Schizophrenia Patients

Tsang, Tsz M., Huang, Jeffrey T.-J., Holmes, Elaine, Bahn, Sabine

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 219 KB

english, 2006

16

Identification of Proteins from Non-model Organisms Using Mass Spectrometry: Application to a Hibernating Mammal

Russeth, Kevin P., Higgins, LeeAnn, Andrews, Matthew T.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 422 KB

english, 2006

17

Trade-Off between High Sensitivity and Increased Potential for False Positive Peptide Sequence Matches Using a Two-Dimensional Linear Ion Trap for Tandem Mass Spectrometry-Based Proteomics

Xie, Hongwei, Griffin, Timothy J.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 224 KB

english, 2006

18

Top-Down Proteomic Analysis of the Soluble Sub-Proteome of the Obligate Thermophile, Geobacillus t hermoleovorans T80: Insights into Its Cellular Processes

Graham, Robert Leslie James, Pollock, Catherine E., Ternan, Nigel G., McMullan, Geoff

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 125 KB

english, 2006

19

Probing Cysteine Reactivity in Proteins by Mass Spectrometric EC-Tagging

Dayon, Loïc, Roussel, Christophe, Girault, Hubert H.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 485 KB

english, 2006

20

Simultaneous Reduction and Alkylation of Protein Disulfides in a Centrifugal Ultrafiltration Device Prior to Two-Dimensional Gel Electrophoresis

Smejkal, Gary B., Li, Chunqin, Robinson, Myra H., Lazarev, Alexander V., Lawrence, Nathan P., Chernokalskaya, Elena

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 289 KB

english, 2006

21

New Products

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 86 KB

english, 2006

22

Characterization of the Maize Xylem Sap Proteome

Alvarez, Sophie, Goodger, Jason Q. D., Marsh, Ellen L., Chen, Sixue, Asirvatham, Victor S., Schachtman, Daniel P.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 374 KB

english, 2006

23

Improved Identification of SUMO Attachment Sites Using C-Terminal SUMO Mutants and Tailored Protease Digestion Strategies

Wohlschlegel, James A., Johnson, Erica S., Reed, Steven I., Yates, John R.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 551 KB

english, 2006

24

Determination of β-Amyloid Peptide Signatures in Cerebrospinal Fluid Using Immunoprecipitation-Mass Spectrometry

Portelius, Erik, Westman-Brinkmalm, Ann, Zetterberg, Henrik, Blennow, Kaj

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 242 KB

english, 2006

25

Strategy for Simulation of CID Spectra of N-Linked Oligosaccharides toward Glycomics

Kameyama, Akihiko, Nakaya, Shuuichi, Ito, Hiromi, Kikuchi, Norihiro, Angata, Takashi, Nakamura, Mitsuru, Ishida, Hide-Ki, Narimatsu, Hisashi

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 643 KB

english, 2006

26

Proteome of Conidial Surface Associated Proteins of Aspergillus f umigatus Reflecting Potential Vaccine Candidates and Allergens

Asif, Abdul R., Oellerich, Michael, Amstrong, Victor W., Riemenschneider, Birgit, Monod, Michel, Reichard, Utz

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 359 KB

english, 2006

27

TOOLbox: QualScore | Minimotif Miner | Human plasma proteome analysis | Peptide-centric database for searches

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 177 KB

english, 2006

28

Proteomics Projects: ABRF proteomics studies: Quantitation and standards

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 202 KB

english, 2006

29

Novel Prefractionation Method Can Be Used in Proteomic Analysis

Bai, Haixin, Yang, Fan, Yang, Xiurong

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 253 KB

english, 2006

30

Conservation of Intrinsic Disorder in Protein Domains and Families: I. A Database of Conserved Predicted Disordered Regions

Chen, Jessica Walton, Romero, Pedro, Uversky, Vladimir N., Dunker, A. Keith

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 333 KB

english, 2006

31

Novel Protein Phosphorylation Site Identification in Spinach Stroma Membranes by Titanium Dioxide Microcolumns and Tandem Mass Spectrometry

Rinalducci, Sara, Larsen, Martin R., Mohammed, Shabaz, Zolla, Lello

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 222 KB

english, 2006

32

Currents: Zebrafish proteomics | Forever young? | Genome-wide screen�for complexes | Proteases as biomarkers | Biomarkers of toxicity | Which proteins are in your Renaissance painting?

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 177 KB

english, 2006

33

Computational Methods for Comparison of Large Genomic and Proteomic Datasets Reveal Protein Markers of Metastatic Cancer

Wang, Yingchun, Hanley, Rachel, Klemke, Richard L.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 215 KB

english, 2006

34

People: New Editorial Advisory Board members

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 96 KB

english, 2006

35

Affinity Proteomic Approach for Identification of an IgA-like Protein in Litopenaeus v annamei and Study on Its Agglutination Characterization

Zhang, Yueling, Wang, Sanying, Xu, Anlong, Chen, Jun, Lin, Bokun, Peng, Xuanxian

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 404 KB

english, 2006

36

Meetings

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 63 KB

english, 2006

37

Hierarchical Protein Identifications and Assignments

Hubbard, Michael J.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 105 KB

english, 2006

38

Research Profile: Shaving proteins off the plasma membrane

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 81 KB

english, 2006

39

Decoy Peptides that Bind Dynorphin Noncovalently Prevent NMDA Receptor-Mediated Neurotoxicity

Woods, Amina S., Kaminski, Rafal, Oz, Murat, Wang, Yun, Hauser, Kurt, Goody, Robin, Wang, Hay-Yan J., Jackson, Shelley N., Zeitz, Peter, Zeitz, Karla P., Zolkowska, Dorota, Schepers, Raf, Nold, Michae

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 358 KB

english, 2006

40

Fast and Accurate Method for Identifying High-Quality Protein-Interaction Modules by Clique Merging and Its Application to Yeast

Zhang, Chi, Liu, Song, Zhou, Yaoqi

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 306 KB

english, 2006

41

Computational Proteomics Analysis System (CPAS): An Extensible, Open-Source Analytic System for Evaluating and Publishing Proteomic Data and High Throughput Biological Experiments J. Proteome Res. 2006 , 5 , 112−121.

Rauch, Adam, Bellew, Matthew, Eng, Jimmy, Fitzgibbon, Matthew, Holzman, Ted, Hussey, Peter, Igra, Mark, MacLean, Brendan, Lin, Chen Wei, Detter, Andrea, Fang, Ruihua, Faca, Vitor, Gafken, Phil, Zhang,

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 38 KB

english, 2006

42

Differential Protein Profiling of Primary versus Immortalized Human RPE Cells Identifies Expression Patterns Associated with Cytoskeletal Remodeling and Cell Survival

Alge, Claudia S., Hauck, Stefanie M., Priglinger, Siegfried G., Kampik, Anselm, Ueffing, Marius

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 1.78 MB

english, 2006

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