Volume 5; Issue 5

Journal of Proteome Research

Volume 5; Issue 5

1

Defining the Mitochondrial Proteomes from Five Rat Organs in a Physiologically Significant Context Using 2D Blue-Native/SDS-PAGE

Reifschneider, Nicole H., Goto, Sataro, Nakamoto, Hideko, Takahashi, Ryoya, Sugawa, Michiru, Dencher, Norbert A., Krause, Frank

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 822 KB

english, 2006

2

Label-Free Protein Quantification Using LC-Coupled Ion Trap or FT Mass Spectrometry: Reproducibility, Linearity, and Application with Complex Proteomes

Wang, Guanghui, Wu, Wells W., Zeng, Weihua, Chou, Chung-Lin, Shen, Rong-Fong

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 229 KB

english, 2006

3

Differential Protein Expression Profiling by iTRAQ−2DLC−MS/MS of Lung Cancer Cells Undergoing Epithelial-Mesenchymal Transition Reveals a Migratory/Invasive Phenotype

Keshamouni, Venkateshwar G., Michailidis, George, Grasso, Catherine S., Anthwal, Shalini, Strahler, John R., Walker, Angela, Arenberg, Douglas A., Reddy, Raju C., Akulapalli, Sudhakar, Thannickal, Vic

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 543 KB

english, 2006

4

Isobaric Tags for Relative and Absolute Quantitation (iTRAQ) Reproducibility: Implication of Multiple Injections

Chong, Poh Kuan, Gan, Chee Sian, Pham, Trong Khoa, Wright, Phillip C.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 195 KB

english, 2006

5

Better Understanding of Organ Dysfunction Requires Proteomic Involvement

Wang, Xiangdong, Adler, Kenneth B., Chaudry, Irshad H., Ward, Peter A.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 290 KB

english, 2006

6

Glutamine-Binding Protein from Escherichia c oli Specifically Binds a Wheat Gliadin Peptide Allowing the Design of a New Porous Silicon-Based Optical Biosensor †

De Stefano, Luca, Rossi, Mauro, Staiano, Maria, Mamone, Gianfranco, Parracino, Antonoietta, Rotiroti, Lucia, Rendina, Ivo, Rossi, Mosè, D'Auria, Sabato

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 160 KB

english, 2006

7

Comparative Proteomics of Ovarian Epithelial Tumors

An, Hee Jung, Kim, Dong Su, Park, Yong Kyu, Kim, Sei Kwang, Choi, Yoon Pyo, Kang, Suki, Ding, Boxiao, Cho, Nam Hoon

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 928 KB

english, 2006

8

Selective Isolation of Lysine-Free Tryptic Peptides Delimited by Arginine Residues: A New Tool for Proteome Analysis

Sánchez, Aniel, González, Luis J., Ramos, Yassel, Betancourt, Lázaro, Gil, Jeovanis, Besada, Vladimir, Fernández-de-Cossio, Jorge, Alvarez, Félix, Padrón, Gabriel

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 386 KB

english, 2006

9

Proteomic Analysis of MCF-7 Cell Lines Expressing the Zinc-Finger or the Proline-Rich Domain of Retinoblastoma-Interacting-Zinc-Finger Protein

Chambery, Angela, Farina, Annarita, Di Maro, Antimo, Rossi, Mariangela, Abbondanza, Ciro, Moncharmont, Bruno, Malorni, Livia, Cacace, Giuseppina, Pocsfalvi, Gabriella, Malorni, Antonio, Parente, Augus

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 482 KB

english, 2006

10

Aqueous Two-Phase Partitioning for Proteomic Monitoring of Cell Surface Biomarkers in Human Peripheral Blood Mononuclear Cells

Everberg, Henrik, Peterson, Ragna, Rak, Sabina, Tjerneld, Folke, Emanuelsson, Cecilia

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 208 KB

english, 2006

11

Use of Solution-IEF-Fractionation Leads to Separation of 2673 Mouse Brain Proteins Including 255 Hydrophobic Structures

Myung, Jae-Kyung, Lubec, Gert

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 279 KB

english, 2006

12

Capillary Isoelectric Focusing Coupled with Dynamic Imaging Detection: A One-Dimensional Separation for Two-Dimensional Protein Characterization

Liu, Zhen, Lemma, Tibebe, Pawliszyn, Janusz

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 223 KB

english, 2006

13

Activity-Based Matrix Metallo-Protease Enrichment Using Automated, Inhibitor Affinity Extractions

Freije, J. Robert, Klein, Theo, Ooms, J. A., Franke, Jan Piet, Bischoff, Rainer

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 228 KB

english, 2006

14

Proteomic Analysis of Human Immunodeficiency Virus Using Liquid Chromatography/Tandem Mass Spectrometry Effectively Distinguishes Specific Incorporated Host Proteins J. Proteome Res. 2006 , 3 , 530−538.

Saphire, Andrew C. S., Gallay, Philippe A., Bark, Steven J.

Journal:

Journal of Proteome Research

Year:

2006

File:

PDF, 30 KB

2006

15

New Products

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 80 KB

english, 2006

16

Government and Society: U.S. FDA: Critical projects include biomarker and bioinformatics development

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 57 KB

english, 2006

17

Proteomic Analysis of Extracellular Proteins from Escherichia c oli W3110

Nandakumar, M. P., Cheung, Agnes, Marten, Mark R.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 249 KB

english, 2006

18

Direct Protein Detection from Biological Media through Electrospray-Assisted Laser Desorption Ionization/Mass Spectrometry

Huang, Min-Zong, Hsu, Hsiu-Jung, Lee, Jen-Yih, Jeng, Jingyueh, Shiea, Jentaie

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 636 KB

english, 2006

19

Complex Graph Matrix Representations and Characterizations of Proteomic Maps and Chemically Induced Changes to Proteomes

Balasubramanian, Krishnan, Khokhani, Kanan, Basak, Subhash C.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 389 KB

english, 2006

20

Enhanced Peptide Mass Fingerprinting through High Mass Accuracy: Exclusion of Non-Peptide Signals Based on Residual Mass

Dodds, Eric D., An, Hyun Joo, Hagerman, Paul J., Lebrilla, Carlito B.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 472 KB

english, 2006

21

Nanobacteria-Like Particles in Human Arthritic Synovial Fluids

Tsurumoto, T., Matsumoto, T., Yonekura, A., Shindo, H.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 512 KB

english, 2006

22

Bridging Neuropeptidomics and Genomics with Bioinformatics: Prediction of Mammalian Neuropeptide Prohormone Processing

Amare, Andinet, Hummon, Amanda B., Southey, Bruce R., Zimmerman, Tyler A., Rodriguez-Zas, Sandra L., Sweedler, Jonathan V.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 96 KB

english, 2006

23

Meeting News: Speeding up biomarker discovery

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 106 KB

english, 2006

24

Nanoporous Surfaces as Harvesting Agents for Mass Spectrometric Analysis of Peptides in Human Plasma

Gaspari, Marco, Ming-Cheng Cheng, Mark, Terracciano, Rosa, Liu, Xuewu, Nijdam, A. Jasper, Vaccari, Lisa, di Fabrizio, Enzo, Petricoin, Emanuel F., Liotta, Lance A., Cuda, Giovanni, Venuta, Salvatore,

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 240 KB

english, 2006

25

Meetings

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 64 KB

english, 2006

26

Research Profile: Proteomics confirms�it: Eat your fiber!

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 89 KB

english, 2006

27

More Sensitive and Quantitative Proteomic Measurements Using Very Low Flow Rate Porous Silica Monolithic LC Columns with Electrospray Ionization-Mass Spectrometry

Luo, Quanzhou, Tang, Keqi, Yang, Feng, Elias, Ayesha, Shen, Yufeng, Moore, Ronald J., Zhao, Rui, Hixson, Kim K., Rossie, Sandra S., Smith, Richard D.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 237 KB

english, 2006

28

Currents: Human embryo proteomics | An interactome map for humans | Metabonomics for epidemiology | Which proteins are involved in differentiation? | PBDEs and the developing brain | Ultramicroarrays for�limited sample quantities | Top-down proteomics on an Orbitrap mass spectrometer | ICPMS for proteomics | TOOLbox: Making a SPLASH | PRISM | Integrating heterogeneous data sets | Combined database of network interactions | ProteomeCommons.org JAF | MasSPIKE

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 177 KB

english, 2006

29

Meeting News: Proteomics on the brain

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 99 KB

english, 2006

30

Enhanced Analysis of Metastatic Prostate Cancer Using Stable Isotopes and High Mass Accuracy Instrumentation

Everley, Patrick A., Bakalarski, Corey E., Elias, Joshua E., Waghorne, Carol G., Beausoleil, Sean A., Gerber, Scott A., Faherty, Brendan K., Zetter, Bruce R., Gygi, Steven P.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 352 KB

english, 2006

31

Phosphoproteome Profiling of Human Skin Fibroblast Cells in Response to Low- and High-Dose Irradiation

Yang, Feng, Stenoien, David L., Strittmatter, Eric F., Wang, Junhua, Ding, Lianghao, Lipton, Mary S., Monroe, Matthew E., Nicora, Carrie D., Gristenko, Marina A., Tang, Keqi, Fang, Ruihua, Adkins, Jos

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 289 KB

english, 2006

32

Miniaturized Solid-Phase Extraction and Sample Preparation for MALDI MS Using a Microfabricated Integrated Selective Enrichment Target

Ekström, Simon, Wallman, Lars, Hök, Daniel, Marko-Varga, György, Laurell, Thomas

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 588 KB

english, 2006

33

Predicting the Solvent Accessibility of Transmembrane Residues from Protein Sequence

Yuan, Zheng, Zhang, Fasheng, Davis, Melissa J., Bodén, Mikael, Teasdale, Rohan D.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 230 KB

english, 2006

34

2-D DIGE Analysis of Butyrate-Treated HCT-116 Cells after Enrichment with Heparin Affinity Chromatography

Tan, Hwee Tong, Zubaidah, Ramdzan M., Tan, Sandra, Hooi, Shing Chuan, Chung, Maxey C. M.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 542 KB

english, 2006

35

Array of Informatics: Applications in Modern Research

Kozarova, Anna, Petrinac, Steven, Ali, Adnan, Hudson, John W.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 481 KB

english, 2006

36

Big Science and Proteomics

Hancock, William S.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 70 KB

english, 2006

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