Volume 6; Issue 4

Journal of Proteome Research

Volume 6; Issue 4

1

Proteomic Analysis of Maternal Serum in Down Syndrome: Identification of Novel Protein Biomarkers

Nagalla, Srinivasa R., Canick, Jacob A., Jacob, Thomas, Schneider, Kimberly A., Reddy, Ashok P., Thomas, Archana, Dasari, Surendra, Lu, Xinfang, Lapidus, Jodi A., Lambert-Messerlian, Geralyn M., Grave

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 472 KB

english, 2007

2

Proteomic Analysis of the Resistance to Aplidin in Human Cancer Cells

González-Santiago, Laura, Alfonso, Patricia, Suárez, Yajaira, Núñez, Antonio, García-Fernández, Luis F., Alvarez, Enrique, Muñoz, Alberto, Casal, J. Ignacio

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 701 KB

english, 2007

3

Low Energy Peptide Fragmentations in an ESI-Q-Tof Type Mass Spectrometer

Mouls, Laetitia, Aubagnac, Jean-Louis, Martinez, Jean, Enjalbal, Christine

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 530 KB

english, 2007

4

Pharmacometabonomic Phenotyping Reveals Different Responses to Xenobiotic Intervention in Rats

Li, Houkai, Ni, Yan, Su, Mingming, Qiu, Yunping, Zhou, Mingmei, Qiu, Mingfeng, Zhao, Aihua, Zhao, Liping, Jia, Wei

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 339 KB

english, 2007

5

Direct Analysis and MALDI Imaging of Formalin-Fixed, Paraffin-Embedded Tissue Sections

Lemaire, R., Desmons, A., Tabet, J. C., Day, R., Salzet, M., Fournier, I.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 745 KB

english, 2007

6

The Art and Practice of Systems Biology in Medicine: Mapping Patterns of Relationships

van der Greef, J., Martin, S., Juhasz, P., Adourian, A., Plasterer, T., Verheij, E. R., McBurney, R. N.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 1.54 MB

english, 2007

7

Proteomics Uncovers a Role for Redox in Drought Tolerance in Wheat §

Hajheidari, Mohsen, Eivazi, Alireza, Buchanan, Bob B., Wong, Joshua H., Majidi, Islam, Salekdeh, Ghasem Hosseini

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 827 KB

english, 2007

8

The Low Molecular Weight Proteome of Halobacterium salinarum

Klein, Christian, Aivaliotis, Michalis, Olsen, Jesper V., Falb, Michaela, Besir, Hüseyin, Scheffer, Beatrix, Bisle, Birgit, Tebbe, Andreas, Konstantinidis, Kosta, Siedler, Frank, Pfeiffer, Friedhelm,

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 603 KB

english, 2007

9

Identification of Novel Protein Biomarkers of Preterm Birth in Human Cervical−Vaginal Fluid

Pereira, Leonardo, Reddy, Ashok P., Jacob, Thomas, Thomas, Archana, Schneider, Kimberly A., Dasari, Surendra, Lapidus, Jodi A., Lu, Xinfang, Rodland, Matthew, Roberts,, Charles T., Gravett, Michael G.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 368 KB

english, 2007

10

Proteomic Analysis of the Resistance to Aplidin in Human Cancer Cells

González-Santiago, Laura, Alfonso, Patricia, Suárez, Yajaira, Núñez, Antonio, García-Fernández, Luis F., Alvarez, Enrique, Muñoz, Alberto, Casal, J. Ignacio

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 701 KB

english, 2007

11

Extensive Cell Envelope Modulation Is Associated with Virulence in Brucella abortus

Lamontagne, Julie, Butler, Heather, Chaves-Olarte, Esteban, Hunter, Joanna, Schirm, Michael, Paquet, Caroline, Tian, Mei, Kearney, Paul, Hamaidi, Lyes, Chelsky, Daniel, Moriyón, Ignacio, Moreno, Edgar

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 948 KB

english, 2007

12

Spectral Properties of Thioflavin T in Solvents with Different Dielectric Properties and in a Fibril-Incorporated Form

Maskevich, Alexander A., Stsiapura, Vitali I., Kuzmitsky, Valeriy A., Kuznetsova, Irina M., Povarova, Olga I., Uversky, Vladimir N., Turoverov, Konstantin K.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 414 KB

english, 2007

13

Concerted Experimental Approach for Sequential Mapping of Peptides and Phosphopeptides Using C18-Functionalized Magnetic Nanoparticles

Hsiao, He-Hsuan, Hsieh, Hsin-Yu, Chou, Chi-Chi, Lin, Shu-Yu, Wang, Andrew H.-J., Khoo, Kay-Hooi

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 532 KB

english, 2007

14

Comprehensive Proteomic Analysis of Human Cervical−Vaginal Fluid

Dasari, Surendra, Pereira, Leonardo, Reddy, Ashok P., Michaels, John-Edward A., Lu, Xinfang, Jacob, Thomas, Thomas, Archana, Rodland, Matthew, Roberts,, Charles T., Gravett, Michael G., Nagalla, Srini

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 187 KB

english, 2007

15

Proteomics Projects: HUPO Cardiovascular Initiative comes into its own

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 60 KB

english, 2007

16

Effects of Probiotic Lactobacillus Paracasei Treatment on the Host Gut Tissue Metabolic Profiles Probed via Magic-Angle-Spinning NMR Spectroscopy

Martin, Francois-Pierre J., Wang, Yulan, Sprenger, Norbert, Holmes, Elaine, Lindon, John C., Kochhar, Sunil, Nicholson, Jeremy K.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 451 KB

english, 2007

17

Predicting Nuclear Localization

Hawkins, John, Davis, Lynne, Bodén, Mikael

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 110 KB

english, 2007

18

Catch-and-Release Reagents for Broadscale Quantitative Proteomics Analyses

Gartner, Carlos A., Elias, Joshua E., Bakalarski, Corey E., Gygi, Steven P.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 471 KB

english, 2007

19

The Functions of Sco Proteins from Genome-Based Analysis

Banci, Lucia, Bertini, Ivano, Cavallaro, Gabriele, Rosato, Antonio

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 625 KB

english, 2007

20

Proteome Analysis of Sulfolobus solfataricus P2 Propanol Metabolism

Chong, Poh Kuan, Burja, Adam M., Radianingtyas, Helia, Fazeli, Alireza, Wright, Phillip C.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 312 KB

english, 2007

21

Altered Proteome in Burkholderia pseudomallei rpoE Operon Knockout Mutant: Insights into Mechanisms of rpoE Operon in Stress Tolerance, Survival, and Virulence

Thongboonkerd, Visith, Vanaporn, Muthita, Songtawee, Napat, Kanlaya, Rattiyaporn, Sinchaikul, Supachok, Chen, Shui-Tein, Easton, Anna, Chu, Karen, Bancroft, Gregory J., Korbsrisate, Sunee

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 300 KB

english, 2007

22

Proteomic Analysis of Salivary Acidic Proline-Rich Proteins in Human Preterm and At-Term Newborns

Inzitari, Rosanna, Vento, Giovanni, Capoluongo, Ettore, Boccacci, Simona, Fanali, Chiara, Cabras, Tiziana, Romagnoli, Costantino, Giardina, Bruno, Messana, Irene, Castagnola, Massimo

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 463 KB

english, 2007

23

Quality Assessment of Tandem Mass Spectra Based on Cumulative Intensity Normalization J. Proteome Res. 2006 , 5 (12), 3241−3248.

Na, Seungjin, Paek, Eunok

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 43 KB

english, 2007

24

Research Profile: Imaging fixed and embedded tissues with MALDI MS

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 104 KB

english, 2007

25

Secreted Proteome Profiling in Human RPE Cell Cultures Derived from Donors with Age Related Macular Degeneration and Age Matched Healthy Donors J. Proteome Res. 2006 , 5 , 2599−2610.

An, EunKyung, Lu, Xiaoning, Flippin, Jessica, Devaney, Joseph M., Halligan, Brian, Hoffman,, Csaky, Karl, Hathout, Yetrib

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 43 KB

english, 2007

26

Selective Metabolite and Peptide Capture/Mass Detection Using Fluorous Affinity Tags

Go, Eden P., Uritboonthai, Wilasinee, Apon, Junefredo V., Trauger, Sunia A., Nordstrom, Anders, O'Maille, Grace, Brittain, Scott M., Peters, Eric C., Siuzdak, Gary

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 290 KB

english, 2007

27

High Sensitivity Identification of Membrane Proteins by MALDI TOF-MASS Spectrometry Using Polystyrene Beads

Bensalem, Noura, Masscheleyn, Sandrine, Mozo, Julien, Vallée, Benoit, Brouillard, Franck, Trudel, Stéphanie, Ricquier, Daniel, Edelman, Aleksander, Guerrera, Ida Chiara, Miroux, Bruno

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 467 KB

english, 2007

28

High-Throughput Proteomics Processing of Proteins in Polyacrylamide in a Multiwell Format

Cummings, Edwin D., Brown, Janet M., Sarva, Siva T., Waldo, Robert H., Hilliard, George M.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 125 KB

english, 2007

29

TOOLbox: Automatic validation of phosphopeptide identifications | Assessing human protein interaction maps | Faster database searches | ByOnic | Assessing phosphopeptide isolation methods | Proteomics of Huntington?s disease | Large-scale phosphoproteomics studies with ETD | A photoactive semiconductor to digest proteins | Host proteins copurify with blood flukes

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 180 KB

english, 2007

30

Assessing Detection Methods for Gel-Based Proteomic Analyses

Harris, Lauren R., Churchward, Matthew A., Butt, R. Hussain, Coorssen, Jens R.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 482 KB

english, 2007

31

Government & Society: New databases for human metabolomics

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 61 KB

english, 2007

32

Seeking Transformation Markers: An Analysis of Differential Tissue Proteomes on the Rice Germplasm Generated from Transformation of Echinochloa crusgalli Genomic DNA

Zhao, Caifeng, Zhao, Bingran, Ren, Yan, Tong, Wei, Wang, Jingqiang, Zhao, Kang, Shu, Shaokun, Xu, Ningzhi, Liu, Siqi

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 504 KB

english, 2007

33

Tryptophan Phosphorescence Studies of the d -Galactose/ d -Glucose-Binding Protein from Escherichia c oli Provide a Molecular Portrait with Structural and Dynamics Features of the Protein

D'Auria, Sabato, Varriale, Antonio, Gonnelli, Margherita, Saviano, Michele, Staiano, Maria, Rossi, Mose', Strambini, Giovanni B.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 435 KB

english, 2007

34

Quantitative Proteome Analysis of Barley Seeds Using Ruthenium(II)-tris-(bathophenanthroline-disulphonate) Staining

Witzel, Katja, Surabhi, Giridara-Kumar, Jyothsnakumari, Gottimukkala, Sudhakar, Chinta, Matros, Andrea, Mock, Hans-Peter

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 407 KB

english, 2007

35

Modeling Protein−Protein Complexes Involved in the Cytochrome c Oxidase Copper-Delivery Pathway

van Dijk, Aalt D. J., Ciofi-Baffoni, Simone, Banci, Lucia, Bertini, Ivano, Boelens, Rolf, Bonvin, Alexandre M. J. J.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 683 KB

english, 2007

36

New Products

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 91 KB

english, 2007

37

A Draft of Protein Interactions in the Malaria Parasite P. falciparum

Wuchty, Stefan, Ipsaro, Jonathan J.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 656 KB

english, 2007

38

Elevated Levels of Phosphorylated Fibrinogen-α-Iso-forms and Differential Expression of Other Post-Translationally Modified Proteins in the Plasma of Ovarian Cancer Patients J. Proteome Res . 2006 , 5 , 3318−3325.

Ogata, Yuko, Heppelmann, Carrie J., Charlesworth, M. Cristine, Madden, Benjamin J., Miller, Melinda N., Kalli, Kimberly R., Cilby, William A., Bergen, H. Robert, Saggese, Diana A., Muddiman, David C.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 43 KB

english, 2007

39

In-Source Decay Causes Artifacts in SELDI-TOF MS Spectra

Ekblad, Lars, Baldetorp, Bo, Fernö, Mårten, Olsson, Håkan, Bratt, Charlotte

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 162 KB

english, 2007

40

Differential Proteomic Analysis of Four Near-Isogenic Brassica napus Varieties Bred for their Erucic Acid and Glucosinolate Contents

Devouge, Vanessa, Rogniaux, Hélène, Nési, Nathalie, Tessier, Dominique, Guéguen, Jacques, Larré, Colette

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 383 KB

english, 2007

41

Comprehensive Proteomic Analysis of the Human Amniotic Fluid Proteome: Gestational Age-Dependent Changes

Michaels, John-Edward A., Dasari, Surendra, Pereira, Leonardo, Reddy, Ashok P., Lapidus, Jodi A., Lu, Xinfang, Jacob, Thomas, Thomas, Archana, Rodland, Matthew, Roberts,, Charles T., Gravett, Michael

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 393 KB

english, 2007

42

A Message of Appreciation to Our Loyal Reviewers

Hancock, William S.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 80 KB

english, 2007

43

Structural and Functional Analysis of Hypothetical Proteins in Mouse Hippocampus from Two-Dimen-sional Gel Electrophoresis J. Proteome Res . 2007 , 6 , 711−723.

Afjehi-Sadat, Leila, Yang, Jae-Won, Pollak, Arnold, Kim, Dae-Won, Choi, Soo-Young, Lubec, Gert

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 43 KB

english, 2007

44

Interaction between Inducible Nitric Oxide Synthase and Calmodulin in Ca 2+ -Free and -Bound Forms

Xiao, Han, Zhou, Hui, Chen, Guifang, Liu, Shanli, Li, Genxi

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 125 KB

english, 2007

45

Monoclonal Antibodies 1G12 and 6A12 to the N-Domain of Human Angiotensin-Converting Enzyme: Fine Epitope Mapping and Antibody-Based Detection of ACE Inhibitors in Human Blood

Balyasnikova, Irina V., Skirgello, Olga E., Binevski, Petr V., Nesterovitch, Andrei B., Albrecht, Ronald F., Kost, Olga A., Danilov, Sergei M.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 1.12 MB

english, 2007

46

In Vitro Expression Levels of Cell-Cycle Checkpoint Proteins Are Associated with Cellular DNA Repair Capacity in Peripheral Blood Lymphocytes: A Multivariate Analysis

Fan, You-Hong, Hu, Zhibin, Li, Chunying, Wang, Li-E, Guo, Zhaozheng, Qiao, Yawei, Zhang, Li, Zhang, Wei, Mao, Li, Wei, Qingyi

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 400 KB

english, 2007

47

HDM2-Binding Partners: Interaction with Translation Elongation Factor EF1α

Frum, Rebecca, Busby, Scott A., Ramamoorthy, Mahesh, Deb, Sumitra, Shabanowitz, Jeffrey, Hunt, Donald F., Deb, Swati P.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 453 KB

english, 2007

48

Research Profile: The cervical–vaginal fluid proteome and possible biomarkers of preterm birth

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 100 KB

english, 2007

49

Large-Scale Proteomics Analysis of Human Ovarian Cancer for Biomarkers

Bengtsson, Sofia, Krogh, Morten, Szigyarto, Cristina Al-Khalili, Uhlen, Mathias, Schedvins, Kjell, Silfverswärd, Claes, Linder, Stig, Auer, Gert, Alaiya, Ayodele, James, Peter

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 585 KB

english, 2007

50

Nitric Oxide and Oxygen Radical Attack on GDP-Dissociation Inhibitor 2 (GDI-2) in Spinal Cord Injury of the Rat

John, Julius Paul Pradeep, Pintsov, Oliver, Petter-Puchner, Alexander, Redl, Heinz, Pollak, Arnold, Chen, Wei-Qiang, Lubec, Gert

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 377 KB

english, 2007

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