Volume 7; Issue 10

Journal of Proteome Research

Volume 7; Issue 10

1

Improving Protein Array Performance: Focus on Washing and Storage Conditions

Nath, Nidhi, Hurst, Robin, Hook, Brad, Meisenheimer, Poncho, Zhao, Kate Q., Nassif, Nadine, Bulleit, Robert F., Storts, Douglas R.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 890 KB

english, 2008

2

Quantitative Analysis of global Ubiquitination in HeLa Cells by Mass Spectrometry

Meierhofer, David, Wang, Xiaorong, Huang, Lan, Kaiser, Peter

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 813 KB

english, 2008

3

Characterization of the Secretome of Suspension Cultures of Medicago Species Reveals Proteins Important for Defense and Development

Kusumawati, Lucia, Imin, Nijat, Djordjevic, Michael A.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 333 KB

english, 2008

4

High Throughput Lipidomic Profiling of Schizophrenia and Bipolar Disorder Brain Tissue Reveals Alterations of Free Fatty Acids, Phosphatidylcholines, and Ceramides

Schwarz, Emanuel, Prabakaran, Sudhakaran, Whitfield, Phil, Major, Hilary, Leweke, F. M., Koethe, Dagmar, McKenna, Peter, Bahn, Sabine

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 456 KB

english, 2008

5

Shotgun Proteomic Analysis of Cerebrospinal Fluid Using Off-Gel Electrophoresis as the First-Dimension Separation

Waller, Lashanda N., Shores, Kevin, Knapp, Daniel R.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 156 KB

english, 2008

6

A Quantitative Proteomic Approach for Identification of Potential Biomarkers in Hepatocellular Carcinoma

Chaerkady, Raghothama, Harsha, H. C., Nalli, Anuradha, Gucek, Marjan, Vivekanandan, Perumal, Akhtar, Javed, Cole, Robert N., Simmers, Jessica, Schulick, Richard D., Singh, Sujay, Torbenson, Michael, P

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 8.29 MB

english, 2008

7

Proteome Analysis of Membrane Fractions in Colorectal Carcinomas by Using 2D-DIGE Saturation Labeling

Alfonso, Patricia, Cañamero, Marta, Fernández-Carbonié, Francisco, Núñez, Antonio, Casal, J. Ignacio

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 16.03 MB

english, 2008

8

Successive and Selective Release of Phosphorylated Peptides Captured by Hydroxy Acid-Modified Metal Oxide Chromatography

Kyono, Yutaka, Sugiyama, Naoyuki, Imami, Koshi, Tomita, Masaru, Ishihama, Yasushi

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.72 MB

english, 2008

9

A Fast SEQUEST Cross Correlation Algorithm

Eng, Jimmy K., Fischer, Bernd, Grossmann, Jonas, MacCoss, Michael J.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.04 MB

english, 2008

10

Human Regulatory Protein Ki-1/57 Has Characteristics of an Intrinsically Unstructured Protein

Bressan, Gustavo C., Silva, Júlio C., Borges, Júlio C., dos Passos, Dario O., Ramos, Carlos H. I., Torriani, Iris L., Kobarg, Jörg

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 4.60 MB

english, 2008

11

Temporal Metabonomic Modeling of l -Arginine-Induced Exocrine Pancreatitis

Bohus, Eszter, Coen, Muireann, Keun, Hector C., Ebbels, Timothy M. D., Beckonert, Olaf, Lindon, John C., Holmes, Elaine, Noszál, Béla, Nicholson, Jeremy K.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 860 KB

english, 2008

12

Antibodypedia seeks to answer the question: “How good is that antibody?”

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 42 KB

english, 2008

13

Improved Sequence Tag Generation Method for Peptide Identification in Tandem Mass Spectrometry

Cao, Xia, Nesvizhskii, Alexey I.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.70 MB

english, 2008

14

MALDI-TOF/TOF-MS Reveals Elevated Serum Haptoglobin and Amyloid A in Behcet’s Disease

Mao, Liming, Dong, Hongtao, Yang, Peizeng, Zhou, Hongyan, Huang, Xiangkun, Lin, Xiaomin, Kijlstra, Aize

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.12 MB

english, 2008

15

Identification of Proteins Adducted by Lipid Peroxidation Products in Plasma and Modifications of Apolipoprotein A1 with a Novel Biotinylated Phospholipid Probe

Szapacs, Matthew E., Kim, Hye-Young H., Porter, Ned A., Liebler, Daniel C.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.87 MB

english, 2008

16

Identification of Differentially Expressed Proteins in the Cervical Mucosa of HIV-1-Resistant Sex Workers

Burgener, Adam, Boutilier, Julie, Wachihi, Charles, Kimani, Joshua, Carpenter, Michael, Westmacott, Garrett, Cheng, Keding, Ball, Terry B., Plummer, Francis

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.84 MB

english, 2008

17

Identification of Four Novel Types of in Vitro Protein Modifications

Xing, Gang, Zhang, Junmei, Chen, Yue, Zhao, Yingming

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 831 KB

english, 2008

18

Three-Layer Sandwich Gel Electrophoresis: A Method of Salt Removal and Protein Concentration in Proteome Analysis

Liu, Ting, Martin, Angela M., Sinai, Anthony P., Lynn, Bert C.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.96 MB

english, 2008

19

Quantitative Phosphoproteome Analysis of Lysophosphatidic Acid Induced Chemotaxis Applying Dual-Step 18 O Labeling Coupled with Immobilized Metal-Ion Affinity Chromatography

Ding, Shi-Jian, Wang, Yingchun, Jacobs, Jon M., Qian, Wei-Jun, Yang, Feng, Tolmachev, Aleksey V., Du, Xiuxia, Wang, Wei, Moore, Ronald J., Monroe, Matthew E., Purvine, Samuel O., Waters, Katrina, Heib

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 748 KB

english, 2008

20

Sorting out HIV resistance

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 97 KB

english, 2008

21

Revealing the secrets of histone H3 modification

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 384 KB

english, 2008

22

pICarver: A Software Tool and Strategy for Peptides Isoelectric Focusing

Vaezzadeh, Ali R., Hernandez, Céline, Vadas, Oscar, Deshusses, Jacques J. M., Lescuyer, Pierre, Lisacek, Frédérique, Hochstrasser, Denis F.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.16 MB

english, 2008

23

Comparison of the Membrane Subproteomes during Growth of a New Pseudomonas Strain on Lysogeny Broth Medium, Glucose, and Phenol

Papasotiriou, Dimitrios G., Markoutsa, Stavroula, Meyer, Bjoern, Papadioti, Anastasia, Karas, Michael, Tsiotis, Georgios

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 11.62 MB

english, 2008

24

Broad Profiling of DNA-Binding Transcription Factor Activities Improves Regulatory Network Construction in Adult Mouse Tissues

Sun, Yi-Min, Zhang, Yan, Zeng, Ling-Qin, Wu, Jian-Ping, Wei, Li, Ren, Ai-Hui, Shao, Wei, Qiao, Ji-Ying, Zhao, Yong-Chao, Zhang, Liang, Mitchelson, Keith R., Cheng, Jing

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 5.48 MB

english, 2008

25

Heme Transport and Detoxification in Nematodes: Subproteomics Evidence of Differential Role of Glutathione Transferases

Perally, Samïrah, LaCourse, E. James, Campbell, Alison M., Brophy, Peter M.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.14 MB

english, 2008

26

Differential Mass Spectrometry of Rat Plasma Reveals Proteins That Are Responsive to 17β-Estradiol and a Selective Estrogen Receptor Modulator PPT

Zhao, Xuemei, Deyanova, Ekaterina G., Lubbers, Laura S., Zafian, Pete, Li, Jenny J., Liaw, Andy, Song, Qinghua, Du, Yi, Settlage, Robert E., Hickey, Gerry J., Yates, Nathan A., Hendrickson, Ronald C.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.35 MB

english, 2008

27

The Multinational Arabidopsis Steering Subcommittee for Proteomics Assembles the Largest Proteome Database Resource for Plant Systems Biology

Weckwerth, Wolfram, Baginsky, Sacha, van Wijk, Klaas, Heazlewood, Joshua L., Millar, Harvey

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 116 KB

english, 2008

28

Membrane Glycoproteins Associated with Breast Tumor Cell Progression Identified by a Lectin Affinity Approach

Wang, Yanfei, Ao, Xiaoping, Vuong, Huy, Konanur, Meghana, Miller, Fred R., Goodison, Steve, Lubman, David M.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 4.44 MB

english, 2008

29

Snake Venomics of the Lesser Antillean Pit Vipers Bothrops caribbaeus and Bothrops lanceolatus : Correlation with Toxicological Activities and Immunoreactivity of a Heterologous Antivenom †

Gutiérrez, José María, Sanz, Libia, Escolano, José, Fernández, Julián, Lomonte, Bruno, Angulo, Yamileth, Rucavado, Alexandra, Warrell, David A., Calvete, Juan J.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.50 MB

english, 2008

30

Proteomic Characterization of Mouse Cytosolic and Membrane Prostate Fractions: High Levels of Free SUMO Peptides Are Androgen-Regulated

Caron, Danielle, Winstall, Éric, Inaguma, Yutaka, Michaud, Sébastien, Lettre, Francine, Bourassa, Sylvie, Kelly, Isabelle, Poirier, Guy G., Faure, Robert L., Tanguay, Robert M.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.35 MB

english, 2008

31

Stable Isotope Labeling Tandem Mass Spectrometry (SILT): Integration with Peptide Identification and Extension to Data-Dependent Scans

Elbert, Donald L., Mawuenyega, Kwasi G., Scott, Evan A., Wildsmith, Kristin R., Bateman, Randall J.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.58 MB

english, 2008

32

Modulation of Retinoic Acid Receptor Alpha Activity by Lysine Methylation in the DNA Binding Domain

Huq, M. D. Mostaqul, Ha, Sung Gil, Wei, Li-Na

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.19 MB

english, 2008

33

Tissue-Specific Expression and Post-Translational Modification of Histone H3 Variants

Garcia, Benjamin A., Thomas, C. Eric, Kelleher, Neil L., Mizzen, Craig A.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.70 MB

english, 2008

34

DIABLA: A New Screening Method for the Discovery of Protein Targets

Montgomery, Robbie, Shay, Hanna, McCarroll, Matthew, Tolley, Luke

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.51 MB

english, 2008

35

HUSERMET researchers look to the metabolome for answers

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 42 KB

english, 2008

36

Calendar

Journal:

Journal of Proteome Research

Year:

2008

File:

PDF, 793 KB

2008

37

Enhanced Detection of CNS Cell Secretome in Plasma Protein-Depleted Cerebrospinal Fluid

Thouvenot, Eric, Urbach, Serge, Dantec, Christelle, Poncet, Joël, Séveno, Martial, Demettre, Edith, Jouin, Patrick, Touchon, Jacques, Bockaert, Joël, Marin, Philippe

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 8.15 MB

english, 2008

38

Characterization of Post-Translational Modifications of the Linker Histones H1 and H5 from Chicken Erythrocytes Using Mass Spectrometry

Snijders, Ambrosius P. L., Pongdam, Sayampong, Lambert, Stan J., Wood, Christopher M., Baldwin, John P., Dickman, Mark J.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.34 MB

english, 2008

39

Intrinsic Disorder in Nuclear Hormone Receptors

Krasowski, Matthew D., Reschly, Erica J., Ekins, Sean

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.01 MB

english, 2008

40

Integrative Proteomic and Cytological Analysis of the Effects of Extracellular Ca 2+ Influx on Pinus bungeana Pollen Tube Development

Wu, Xiaoqin, Chen, Tong, Zheng, Maozhong, Chen, Yanmei, Teng, Nianjun, Šamaj, Jozef, Baluška, František, Lin, Jinxing

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 18.69 MB

english, 2008

41

Fractionation of Complex Protein Mixture by Virtual Three-Dimensional Liquid Chromatography Based on Combined pH and Salt Steps

Ning, Zhi-Bin, Li, Qing-Run, Dai, Jie, Li, Rong-Xia, Shieh, Chia-Hui, Zeng, Rong

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 4.28 MB

english, 2008

42

Prediction of Peptidase Category Based on Functional Domain Composition

Xu, XiaoChun, Yu, Dong, Fang, Wei, Cheng, Yushao, Qian, Ziliang, Lu, WenCong, Cai, Yudong, Feng, Kaiyan

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 90 KB

english, 2008

43

Comprehensive Characterization of Heat Shock Protein 27 Phosphorylation in Human Endothelial Cells Stimulated by the Microbial Dithiole Thiolutin

Dai, Shujia, Jia, Yifeng, Wu, Shiaw-Lin, Isenberg, Jeff S., Ridnour, Lisa A., Bandle, Russell W., Wink, David A., Roberts, David D., Karger, Barry L.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.23 MB

english, 2008

44

Changes in the Gallus gallus Proteome Induced by Marek’s Disease Virus

Ramaroson, Mialy F., Ruby, James, Goshe, Michael B., Liu, Hsiao-Ching

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.26 MB

english, 2008

45

Multilevel Data Analysis of a Crossover Designed Human Nutritional Intervention Study

van Velzen, Ewoud J. J., Westerhuis, Johan A., van Duynhoven, John P. M., van Dorsten, Ferdi A., Hoefsloot, Huub C. J., Jacobs, Doris M., Smit, Suzanne, Draijer, Richard, Kroner, Christine I., Smilde,

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 913 KB

english, 2008