Volume 7; Issue 3

Journal of Proteome Research

Volume 7; Issue 3

1

Biological Pathways Contributing to Organ-Specific Phenotype of Brain Metastatic Cells

Martín, Berta, Aragüés, Ramón, Sanz, Rebeca, Oliva, Baldo, Boluda, Susana, Martínez, Antonio, Sierra, Angels

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.58 MB

english, 2008

2

Protein Quantitation in 2-D Gels Using Fluorescence with Water Raman as an Internal Standard

Loethen, Yvette L., Knudsen, Giselle M., Davis, Brandon, Gudihal, Ravindra, Davisson, V. Jo, Ben-Amotz, Dor

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 198 KB

english, 2008

3

Phosphoproteome Analysis of Fission Yeast

Wilson-Grady, Joshua T., Villén, Judit, Gygi, Steven P.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 538 KB

english, 2008

4

Combining Protein-Based IMAC, Peptide-Based IMAC, and MudPIT for Efficient Phosphoproteomic Analysis

Cantin, Greg T., Yi, Wei, Lu, Bingwen, Park, Sung Kyu, Xu, Tao, Lee, Jiing-Dwan, Yates, John R.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 225 KB

english, 2008

5

Rapid Isolation and Identification of Bacteriophage T4-Encoded Modifications of Escherichia coli RNA Polymerase: A Generic Method to Study Bacteriophage/Host Interactions

Westblade, Lars F., Minakhin, Leonid, Kuznedelov, Konstantin, Tackett, Alan J., Chang, Emmanuel J., Mooney, Rachel A., Vvedenskaya, Irina, Wang, Qing Jun, Fenyö, David, Rout, Michael P., Landick, Robe

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 621 KB

english, 2008

6

MALDI Imaging of Formalin-Fixed Paraffin-Embedded Tissues: Application to Model Animals of Parkinson Disease for Biomarker Hunting

Stauber, J., Lemaire, R., Franck, J., Bonnel, D., Croix, D., Day, R., Wisztorski, M., Fournier, I., Salzet, M.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 497 KB

english, 2008

7

Absolute SILAC for Accurate Quantitation of Proteins in Complex Mixtures Down to the Attomole Level

Hanke, Stefan, Besir, Hüseyin, Oesterhelt, Dieter, Mann, Matthias

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.47 MB

english, 2008

8

Spectral Index for Assessment of Differential Protein Expression in Shotgun Proteomics

Fu, Xiaoyun, Gharib, Sina A., Green, Pattie S., Aitken, Moira L., Frazer, David A., Park, David R., Vaisar, Tomas, Heinecke, Jay W.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 900 KB

english, 2008

9

Identification and Validation of Eukaryotic Aspartate and Glutamate Methylation in Proteins

Sprung, Robert, Chen, Yue, Zhang, Kai, Cheng, Dongmei, Zhang, Terry, Peng, Junmin, Zhao, Yingming

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 419 KB

english, 2008

10

Mapping of the Serum Proteome of Hepatocellular Carcinoma Induced by Targeted Overexpression of Epidermal Growth Factor to Liver Cells of Transgenic Mice

Gazzana, Giuseppe, Borlak, Jürgen

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.60 MB

english, 2008

11

The Tryptophan Phosphorescence of Porcine and Mutant Bovine Odorant-Binding Proteins: A Probe for the Local Protein Structure and Dynamics

D’Auria, Sabato, Staiano, Maria, Varriale, Antonio, Gonnelli, Margherita, Marabotti, Anna, Rossi, Mose’, Strambini, Giovanni B.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 690 KB

english, 2008

12

Correlating the Transcriptome, Proteome, and Metabolome in the Environmental Adaptation of a Hyperthermophile

Trauger, Sunia A., Kalisak, Ewa, Kalisiak, Jaroslaw, Morita, Hirotoshi, Weinberg, Michael V., Menon, Angeli Lal, Poole II, Farris L., Adams, Michael W. W., Siuzdak, Gary

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.03 MB

english, 2008

13

Enrichment of Phosphopeptides by Fe 3+ -Immobilized Magnetic Nanoparticles for Phosphoproteome Analysis of the Plasma Membrane of Mouse Liver

Tan, Feng, Zhang, Yangjun, Mi, Wei, Wang, Jinglan, Wei, Junying, Cai, Yun, Qian, Xiaohong

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 895 KB

english, 2008

14

The Proteomic Response of Mycobacterium smegmatis to Anti-Tuberculosis Drugs Suggests Targeted Pathways

Wang, Rong, Marcotte, Edward M.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 662 KB

english, 2008

15

Antigen Retrieval for Proteomic Characterization of Formalin-Fixed and Paraffin-Embedded Tissues

Xu, Haifeng, Yang, Li, Wang, Weijie, Shi, Shan-Rong, Liu, Cheng, Liu, Ying, Fang, Xueping, Taylor, Clive R., Lee, Cheng S., Balgley, Brian M.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.76 MB

english, 2008

16

iTRAQ-Facilitated Proteomic Analysis of Human Prostate Cancer Cells Identifies Proteins Associated with Progression

Glen, Adam, Gan, Chee S., Hamdy, Freddie C., Eaton, Colby L., Cross, Simon S., Catto, James W. F., Wright, Phillip C., Rehman, Ishtiaq

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.61 MB

english, 2008

17

Downregulation of Tsx and OmpW and Upregulation of OmpX Are Required for Iron Homeostasis in Escherichia coli

Lin, Xiang-min, Wu, Li-na, Li, Hui, Wang, San-ying, Peng, Xuan-xian

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.79 MB

english, 2008

18

Proteomic Analysis of Mouse Brain Microsomes: Identification and Bioinformatic Characterization of Endoplasmic Reticulum Proteins in the Mammalian Central Nervous System

Stevens, Stanley M., Duncan, R. Scott, Koulen, Peter, Prokai, Laszlo

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 979 KB

english, 2008

19

Proteomic Profiling of Endothelial Cells in Human Lung Cancer

Park, Hye-Jeong, Kim, Byung-Gyu, Lee, Seung-Jin, Heo, Sun-Hee, Kim, Jae-Young, Kwon, Tae-Hwan, Lee, Eung-Bae, Ryoo, Hyun-Mo, Cho, Je-Yoel

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.57 MB

english, 2008

20

Coupling of Native Liquid Phase Isoelectrofocusing and Blue Native Polyacrylamide Gel Electrophoresis: A Potent Tool for Native Membrane Multiprotein Complex Separation

D’Amici, Gian Maria, Timperio, Anna Maria, Zolla, Lello

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.23 MB

english, 2008

21

Online Microwave D-Cleavage LC-ESI-MS/MS of Intact Proteins: Site-Specific Cleavages at Aspartic Acid Residues and Disulfide Bonds

Hauser, Nicolas J., Basile, Franco

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.21 MB

english, 2008

22

Outer membrane Modifications of Pseudomonas fluorescens MF37 in Response to Hyperosmolarity

Guyard-Nicodème, Muriel, Bazire, Alexis, Hémery, Gaëlle, Meylheuc, Thierry, Mollé, Daniel, Orange, Nicole, Fito-Boncompte, Laurène, Feuilloley, Marc, Haras, Dominique, Dufour, Alain, Chevalier, S

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 258 KB

english, 2008

23

Basic and clinical proteomics researchers: the great divide?

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 627 KB

english, 2008

24

NanoLC-MS/MS Analysis Provides New Insights into the Phosphorylation Pattern of Cdc25B in Vivo: Full Overlap with Sites of Phosphorylation by Chk1 and Cdk1/cycB Kinases in Vitro

Bouché, Jean-Pierre, Froment, Carine, Dozier, Christine, Esmenjaud-Mailhat, Charlotte, Lemaire, Matthieu, Monsarrat, Bernard, Burlet-Schiltz, Odile, Ducommun, Bernard

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 478 KB

english, 2008

25

Comparative Proteomics of Human Monkeypox and Vaccinia Intracellular Mature and Extracellular Enveloped Virions

Manes, Nathan P., Estep, Ryan D., Mottaz, Heather M., Moore, Ronald J., Clauss, Therese R. W., Monroe, Matthew E., Du, Xiuxia, Adkins, Joshua N., Wong, Scott W., Smith, Richard D.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.26 MB

english, 2008

26

Development of a Novel Oligonucleotide Array-Based Transcription Factor Assay Platform for Genome-Wide Active Transcription Factor Profiling in Saccharomyces cerevisiae

Zhao, Yongchao, Shao, Wei, Wei, Huajiang, Qiao, Jiying, Lu, Ying, Sun, Yimin, Mitchelson, Keith, Cheng, Jing, Zhou, Yuxiang

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.85 MB

english, 2008

27

Mass Spectrometry Analysis of a Protein Kinase CK2β Subunit Interactome Isolated from Mouse Brain by Affinity Chromatography

Arrigoni, Giorgio, Pagano, Mario A., Sarno, Stefania, Cesaro, Luca, James, Peter, Pinna, Lorenzo A.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 646 KB

english, 2008

28

Combining MALDI-FTMS and Bioinformatics for Rapid Peptidomic Comparisons

Schmidt, Joshua J., McIlwain, Sean, Page, David, Christie, Andrew E., Li, Lingjun

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.62 MB

english, 2008

29

Analysis of the Oryza sativa Plasma Membrane Proteome Using Combined Protein and Peptide Fractionation Approaches in Conjunction with Mass Spectrometry

Natera, Siria H. A., Ford, Kristina L., Cassin, Andrew M., Patterson, John H., Newbigin, Edward J., Bacic, Antony

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.05 MB

english, 2008

30

ENSAM: Europium Nanoparticles for Signal Enhancement of Antibody Microarrays on Nanoporous Silicon

Järås, Kerstin, Tajudin, Asilah Ahmad, Ressine, Anton, Soukka, Tero, Marko-Varga, György, Bjartell, Anders, Malm, Johan, Laurell, Thomas, Lilja, Hans

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.44 MB

english, 2008

31

Tandem Immunoprecipitation of Phosphotyrosine-Mass Spectrometry (TIPY-MS) Indicates C19ORF19 Becomes Tyrosine-Phosphorylated and Associated with Activated Epidermal Growth Factor Receptor

Tong, Jiefei, Taylor, Paul, Jovceva, Eleonora, St-Germain, Jonathan R., Jin, Lily L., Nikolic, Ana, Gu, Xiaoping, Li, Zhi Hua, Trudel, Suzanne, Moran, Michael F.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.76 MB

english, 2008

32

Proteomic Approach To Identify Champagne Wine Proteins as Modified by Botrytis cinerea Infection

Cilindre, Clara, Jégou, Sandrine, Hovasse, Agnès, Schaeffer, Christine, Castro, Antonio J., Clément, Christophe, Van Dorsselaer, Alain, Jeandet, Philippe, Marchal, Richard

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 815 KB

english, 2008

33

Novel Microwave-Assisted Digestion by Trypsin-Immobilized Magnetic Nanoparticles for Proteomic Analysis

Lin, Shuang, Yun, Dong, Qi, Dawei, Deng, Chunhui, Li, Yan, Zhang, Xiangmin

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 647 KB

english, 2008

34

Comparative Analysis of the Venom Proteomes of Vipera ammodytes ammodytes and Vipera ammodytes meridionalis

Georgieva, Dessislava, Risch, Michaela, Kardas, Anna, Buck, Friedrich, von Bergen, Martin, Betzel, Christian

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.05 MB

english, 2008

35

Asparagine Deamidation and the Role of Higher Order Protein Structure

Rivers, Jenny, McDonald, Lucy, Edwards, Ian J., Beynon, Robert J.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 543 KB

english, 2008

36

A Two-Dimensional Array for Simultaneous Sequencing of N- and O-Glycans and Their Glycoforms on Specific Glycosylation Sites ♦

Tzur, Yaron, Markovich, Amir, Lichtenstein, Rachel G.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 336 KB

english, 2008

37

Multivariate Data Analysis of Two-Dimensional Gel Electrophoresis Protein Patterns from Few Samples †

Nedenskov Jensen, Kristina, Jessen, Flemming, Jørgensen, Bo M.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 230 KB

english, 2008

38

Profiling of Human Serum Glycans Associated with Liver Cancer and Cirrhosis by IMS−MS

Isailovic, D., Kurulugama, R. T., Plasencia, M. D., Stokes, S. T., Kyselova, Z., Goldman, R., Mechref, Y., Novotny, M. V., Clemmer, D. E.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.25 MB

english, 2008

39

Prediction of Membrane Protein Types in a Hybrid Space

Jia, Peilin, Qian, Ziliang, Feng, Kaiyan, Lu, Wencong, Li, Yixue, Cai, Yudong

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 383 KB

english, 2008

40

A Targeted Proteomic Analysis of the Ubiquitin-Like Modifier Nedd8 and Associated Proteins

Jones, Jeffrey, Wu, Kenneth, Yang, Yingying, Guerrero, Cortnie, Nillegoda, Nadinath, Pan, Zhen-Qiang, Huang, Lan

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.44 MB

english, 2008

41

Integrative Top-Down System Metabolic Modeling in Experimental Disease States via Data-Driven Bayesian Methods

Bang, Jung-Wook, Crockford, Derek J., Holmes, Elaine, Pazos, Florencio, Sternberg, Michael J. E., Muggleton, Stephen H., Nicholson, Jeremy K.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 37 KB

english, 2008

42

Quantitative Gel Electrophoresis: Sources of Variation

Schröder, Simone, Zhang, Hui, Yeung, Edward S., Jänsch, Lothar, Zabel, Claus, Wätzig, Hermann

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 489 KB

english, 2008

43

Analysis of TRPC3-Interacting Proteins by Tandem Mass Spectrometry

Lockwich, Timothy, Pant, Jaya, Makusky, Anthony, Jankowska-Stephens, Ewa, Kowalak, Jeffrey A., Markey, Sanford P., Ambudkar, Indu S.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.33 MB

english, 2008

44

A Limited Screen for Protein Interactions Reveals New Roles for Protein Phosphatase 1 in Cell Cycle Control and Apoptosis

Flores-Delgado, Guillermo, Liu, Cathy W. Y., Sposto, Richard, Berndt, Norbert

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 37 KB

english, 2008

45

Evaluation of Comprehensive Multidimensional Separations Using Reversed-Phase, Reversed-Phase Liquid Chromatography/Mass Spectrometry for Shotgun Proteomics

Nakamura, Tatsuji, Kuromitsu, Junro, Oda, Yoshiya

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.17 MB

english, 2008

46

Systematic Investigation of the Hemolymph Proteome of Manduca sexta at the Fifth Instar Larvae Stage Using One- and Two-Dimensional Proteomics Platforms

Furusawa, Takako, Rakwal, Randeep, Nam, Hyung Wook, Hirano, Misato, Shibato, Junko, Kim, Yu Sam, Ogawa, Yoko, Yoshida, Yasukazu, Kramer, Karl J., Kouzuma, Yoshiaki, Agrawal, Ganesh Kumar, Yonekura, Ma

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.91 MB

english, 2008

47

The Editor's Update for 2007 and a Peek Into 2008

Hancock, William

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 261 KB

english, 2008

48

Proteomic profiling method not suitable for detecting prostate cancer | New law mandates open access for NIH-funded research

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 491 KB

english, 2008

49

Metabolomics, transcriptomics, proteomics, oh my!

Perkel, Jeffrey M.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 98 KB

english, 2008

50

Defining the Regulated Secreted Proteome of Rodent Adipocytes upon the Induction of Insulin Resistance

Lim, Jae-Min, Sherling, Dan, Teo, Chin Fen, Hausman, Dorothy B., Lin, Dawei, Wells, Lance

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 798 KB

english, 2008

51

Meetings

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 126 KB

english, 2008

52

Mixed-Effects Statistical Model for Comparative LC−MS Proteomics Studies †

Daly, D. S., Anderson, K. K., Panisko, E. A., Purvine, S. O., Fang, R., Monroe, M. E., Baker, S. E.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 885 KB

english, 2008

53

Using the semantic web to retrieve proteomics information | Glycosylation site prediction | Integrating peptide-retention information with MS/MS data | TandTRAQ

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 425 KB

english, 2008

54

Characterization of the Rat Liver Membrane Proteome Using Peptide Immobilized pH Gradient Isoelectric Focusing

Chick, J. M., Haynes, P. A., Molloy, M. P., Bjellqvist, B., Baker, M. S., Len, A. C. L.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.19 MB

english, 2008

55

Metabolomics unravels the empty-calorie phenomenon | Hydrogel particles for candidate biomarker isolation | E. coli proteome on a chip | A protein implicated in intrauterine growth restriction | Whole-organism imaging MS | Amyloid fibrils formed by semen proteins boost HIV infection

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 653 KB

english, 2008

56

Tyrosine Phosphoproteomics and Identification of Substrates of Protein Tyrosine Phosphatase dPTP61F in Drosophila S2 Cells by Mass Spectrometry-Based Substrate Trapping Strategy

Chang, Ying-Che, Lin, Shu-Yu, Liang, Suh-Yuen, Pan, Kuan-Ting, Chou, Chi-Chi, Chen, Chien-Hung, Liao, Chung-Ling, Khoo, Kay-Hooi, Meng, Tzu-Ching

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 970 KB

english, 2008

57

Closer scrutiny of Nedd8, an accessory to protein murder

Cassiday, Laura

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 248 KB

english, 2008

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