Volume 7; Issue 4

Journal of Proteome Research

Volume 7; Issue 4

1

Plasma Proteome Profiling of a Mouse Model of Breast Cancer Identifies a Set of Up-Regulated Proteins in Common with Human Breast Cancer Cells

Pitteri, Sharon J., Faca, Vitor M., Kelly-Spratt, Karen S., Kasarda, A. Erik, Wang, Hong, Zhang, Qing, Newcomb, Lisa, Krasnoselsky, Alexei, Paczesny, Sophie, Choi, Gina

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.57 MB

english, 2008

2

Humoral Immunity Directed against Tumor-Associated Antigens As Potential Biomarkers for the Early Diagnosis of Cancer

Lu, Hailing, Goodell, Vivian, Disis, Mary L.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 323 KB

english, 2008

3

Mapping the Integrin-Linked Kinase Interactome Using SILAC

Dobreva, Iveta, Fielding, Andrew, Foster, Leonard J., Dedhar, Shoukat

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.83 MB

english, 2008

4

Breast Tumor Microenvironment: Proteomics Highlights the Treatments Targeting Secretome

Chen, Shui-Tein, Pan, Tai-Long, Juan, Hsueh-Fen, Chen, Tai-Yuan, Lin, Yih-Shyan, Huang, Chun-Ming

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 272 KB

english, 2008

5

Differentiating Proteomic Biomarkers in Breast Cancer by Laser Capture Microdissection and MALDI MS

Sanders, Melinda E., Dias, Eduardo C., Xu, Baogang J., Mobley, James A., Billheimer, Dean, Roder, Heinrich, Grigorieva, Julia, Dowsett, Mitchell, Arteaga, Carlos L., Caprioli, Richard M.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 5.17 MB

english, 2008

6

GlycoWorkbench: A Tool for the Computer-Assisted Annotation of Mass Spectra of Glycans †

Ceroni, Alessio, Maass, Kai, Geyer, Hildegard, Geyer, Rudolf, Dell, Anne, Haslam, Stuart M.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 510 KB

english, 2008

7

Application of Protein Microarrays for Multiplexed Detection of Antibodies to Tumor Antigens in Breast Cancer

Anderson, Karen S., Ramachandran, Niroshan, Wong, Jessica, Raphael, Jacob V., Hainsworth, Eugenie, Demirkan, Gokhan, Cramer, Daniel, Aronzon, Dina, Hodi, F. Stephen, Harris, Lyndsay, Logvinenko, Tanya

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.33 MB

english, 2008

8

Rapid and Effective Focusing in a Carrier Ampholyte Solution Isoelectric Focusing System: A Proteome Prefractionation Tool

Tran, John C., Doucette, Alan A.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.81 MB

english, 2008

9

Plasma Glycoprotein Profiling for Colorectal Cancer Biomarker Identification by Lectin Glycoarray and Lectin Blot

Qiu, Yinghua, Patwa, Tasneem H., Xu, Li, Shedden, Kerby, Misek, David E., Tuck, Missy, Jin, Gracie, Ruffin, Mack T., Turgeon, Danielle K., Synal, Sapna, Bresalier, Robert, Marcon, Norman, Brenner, Dea

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.03 MB

english, 2008

10

Targeted Glycoproteomic Identification of Biomarkers for Human Breast Carcinoma

Abbott, Karen L., Aoki, Kazuhiro, Lim, Jae-Min, Porterfield, Mindy, Johnson, Rachelle, O’Regan, Ruth M., Wells, Lance, Tiemeyer, Michael, Pierce, Michael

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.47 MB

english, 2008

11

In Vivo Identification of the Outer Membrane Protein OmcA−MtrC Interaction Network in Shewanella oneidensis MR-1 Cells Using Novel Hydrophobic Chemical Cross-Linkers

Zhang, Haizhen, Tang, Xiaoting, Munske, Gerhard R., Zakharova, Natalia, Yang, Li, Zheng, Chunxiang, Wolff, Megan A., Tolic, Nikola, Anderson, Gordon A., Shi, Liang, Marshall, Matthew J., Fredrickson,

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.71 MB

english, 2008

12

Quantitative Shotgun Proteomics of Enriched Heterocysts from Nostoc sp. PCC 7120 Using 8-Plex Isobaric Peptide Tags

Ow, Saw Yen, Cardona, Tanai, Taton, Arnaud, Magnuson, Ann, Lindblad, Peter, Stensjö, Karin, Wright, Phillip C.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.56 MB

english, 2008

13

Phosphoproteome Analysis of Drosophila melanogaster Embryos

Zhai, Bo, Villén, Judit, Beausoleil, Sean A., Mintseris, Julian, Gygi, Steven P.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 5.54 MB

english, 2008

14

Proteomics of Breast Cancer: The Quest for Markers and Therapeutic Targets

Hondermarck, Hubert, Tastet, Christophe, El Yazidi-Belkoura, Ikram, Toillon, Robert-Alain, Le Bourhis, Xuefen

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 150 KB

english, 2008

15

Chip-Based Enrichment and NanoLC−MS/MS Analysis of Phosphopeptides from Whole Lysates

Mohammed, Shabaz, Kraiczek, Karsten, Pinkse, Martijn W. H., Lemeer, Simone, Benschop, Joris J., Heck, Albert J. R.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.05 MB

english, 2008

16

Protein arrays from DNA templates | Unambiguous protein identification by unique sequence tags | Relative protein quantification by ISIS | Antioxidant changes during tomato paste production | Phosphoprotein quantification by elemental MS | Subunit interactions in the human proteasome

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 641 KB

english, 2008

17

Glycosylation Site-Specific Analysis of HIV Envelope Proteins (JR-FL and CON-S) Reveals Major Differences in Glycosylation Site Occupancy, Glycoform Profiles, and Antigenic Epitopesʼ Accessibility

Go, Eden P., Irungu, Janet, Zhang, Ying, Dalpathado, Dilusha S., Liao, Hua-Xin, Sutherland, Laura L., Alam, S. Munir, Haynes, Barton F., Desaire, Heather

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 13.57 MB

english, 2008

18

New Products

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 626 KB

english, 2008

19

Mapping the Larval Midgut Lumen Proteome of Helicoverpa armigera , a Generalist Herbivorous Insect

Pauchet, Yannick, Muck, Alexander, Svatoš, Aleš, Heckel, David G., Preiss, Susanne

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.80 MB

english, 2008

20

The Identification and Characterization of Membranome Components

Ghosh, Dhimankrishna, Beavis, Ron C., Wilkins, John A.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.35 MB

english, 2008

21

Clinical Proteomic Technologies Initiative: moving right along

Piggee, Christine

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.08 MB

english, 2008

22

Epinephrine Increases Phosphorylation of MAP-2c in Rat Pheochromocytoma Cells (PC12 Cells) via a Protein Kinase C- and Mitogen Activated Protein Kinase-Dependent Mechanism

Tie, Lu, Zhang, Jian-Zhao, Lin, Yan-Hua, Su, Tian-Hao, Li, Yu-Hua, Wu, Hong-Li, Zhang, You-Yi, Yu, He-Ming, Li, Xue-Jun

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 6.11 MB

english, 2008

23

Proteomic Analysis of Hepatic Protein Profiles in Rare Minnow ( Gobiocypris rarus ) Exposed to Perfluorooctanoic Acid

Wei, Yanhong, Chan, Leo. L., Wang, Dazhi, Zhang, Hongxia, Wang, Jianshe, Dai, Jiayin

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 7.25 MB

english, 2008

24

Combined Experimental and Statistical Strategy for Mass Spectrometry Based Serum Protein Profiling for Diagnosis of Breast Cancer: A Case-Control Study

Callesen, Anne K., Vach, Werner, Jørgensen, Per E., Cold, Søren, Tan, Qihua, dePont Christensen, René, Mogensen, Ole, Kruse, Torben A., Jensen, Ole N., Madsen, Jonna S.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 199 KB

english, 2008

25

Proteomic Identification of PKC-Mediated Expression of 20E-Induced Protein in Drosophila melanogaster

Sun, Yaning, An, Shiheng, Henrich, Vincent C., Sun, Xiaoping, Song, Qisheng

Journal:

Journal of Proteome Research

Year:

2008

File:

PDF, 123 KB

2008

26

New Insight into Stimulus-Induced Plasticity of the Olfactory Epithelium in Mus musculus by Quantitative Proteomics

Barbour, Jon, Neuhaus, Eva M., Piechura, Heike, Stoepel, Nadine, Mashukova, Anastasia, Brunert, Daniela, Sitek, Barbara, Stühler, Kai, Meyer, Helmut E., Hatt, Hanns, Warscheid, Bettina

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.35 MB

english, 2008

27

The Effect of 24S-Hydroxycholesterol on Cholesterol Homeostasis in Neurons: Quantitative Changes to the Cortical Neuron Proteome

Wang, Yuqin, Muneton, Sabina, Sjövall, Jan, Jovanovic, Jasmina N., Griffiths, William J.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 454 KB

english, 2008

28

Pores Formation on Cell Membranes by Hederacolchiside A1 Leads to a Rapid Release of Proteins for Cytosolic Subproteome Analysis

Mazzucchelli, Gabriel D., Cellier, Nicolas A., Mshviladzade, Vakhtang, Elias, Riad, Shim, Yong-Ho, Touboul, David, Quinton, Loïc, Brunelle, Alain, Laprévote, Olivier, De Pauw, Edwin A., De Pauw-Gillet

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 8.90 MB

english, 2008

29

Proteomics Analysis of Rice Lesion Mimic Mutant ( spl 1) Reveals Tightly Localized Probenazole-Induced Protein (PBZ1) in Cells Undergoing Programmed Cell Death

Kim, Sun Tae, Kim, Sang Gon, Kang, Young Hyun, Wang, Yiming, Kim, Jae-Yean, Yi, Nari, Kim, Ju-Kon, Rakwal, Randeep, Koh, Hee-Jong, Kang, Kyu Young

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 12.43 MB

english, 2008

30

Proteomic Analysis of Microsomes from Lactating Bovine Mammary Gland

Peng, Lifeng, Rawson, Pisana, McLauchlan, Danyl, Lehnert, Klaus, Snell, Russell, Jordan, T. William

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 945 KB

english, 2008

31

A Proteomic Analysis of the Plasma Glycoproteins of a MCF-7 Mouse Xenograft: A Model System for the Detection of Tumor Markers

Orazine, Christina I., Hincapie, Marina, Hancock, William S., Hattersley, Maureen, Hanke, Jeff H.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.89 MB

english, 2008

32

New Protein Clustering of Breast Cancer Tissue Proteomics Using Actin Content as a Cellularity Indicator

Pucci-Minafra, Ida, Cancemi, Patrizia, Albanese, Nadia Ninfa, Di Cara, Gianluca, Marabeti, Maria Rita, Marrazzo, Antonio, Minafra, Salvatore

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 10.93 MB

english, 2008

33

Automatic Validation of Phosphopeptide Identifications by the MS2/MS3 Target-Decoy Search Strategy

Jiang, Xinning, Han, Guanghui, Feng, Shun, Jiang, Xiaogang, Ye, Mingliang, Yao, Xuebiao, Zou, Hanfa

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 512 KB

english, 2008

34

Creationism creeps in

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.72 MB

english, 2008

35

Proteome Profiling of Breast Tumors by Gel Electrophoresis and Nanoscale Electrospray Ionization Mass Spectrometry

Alldridge, Louise, Metodieva, Gergana, Greenwood, Christina, Al-Janabi, Khalid, Thwaites, Laura, Sauven, Paul, Metodiev, Metodi

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 7.05 MB

english, 2008

36

Calendar

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 124 KB

english, 2008

37

The best of both worlds: studying plasma and cells to understand breast cancer

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 252 KB

english, 2008

38

Evaluation of Data-Dependent versus Targeted Shotgun Proteomic Approaches for Monitoring Transcription Factor Expression in Breast Cancer

Sandhu, Charanjit, Hewel, Johannes A., Badis, Gwenael, Talukder, Shaheynoor, Liu, Jian, Hughes, Timothy R., Emili, Andrew

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.25 MB

english, 2008

39

A Window on the Mammary Gland Proteome

Souchelnytskyi, Sam Hanash and Serhiy

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 136 KB

english, 2008

40

Identification of Breast Cancer Peptide Epitopes Presented by HLA-A*0201

Hawkins, Oriana E., VanGundy, Rodney S., Eckerd, Annette M., Bardet, Wilfried, Buchli, Rico, Weidanz, Jon A., Hildebrand, William H.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 7.00 MB

english, 2008

41

Novel Breast Cancer Biomarkers Identified by Integrative Proteomic and Gene Expression Mapping

Ou, Keli, Yu, Kun, Kesuma, Djohan, Hooi, Michelle, Huang, Ning, Chen, Wei, Lee, Suet Ying, Goh, Xin Pei, Tan, Lay keng, Liu, Jia, Soon, Sou Yen, Bin Abdul Rashid, Suhaimi, Putti, Thomas C., Jikuya, Hi

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 7.39 MB

english, 2008

42

Interaction of Asymmetric ABCC9 -Encoded Nucleotide Binding Domains Determines K ATP Channel SUR2A Catalytic Activity

Park, Sungjo, Lim, Bernard B. C., Perez-Terzic, Carmen, Mer, Georges, Terzic, Andre

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.85 MB

english, 2008

43

A Hybrid Method for Peptide Identification Using Integer Linear Optimization, Local Database Search, and Quadrupole Time-of-Flight or OrbiTrap Tandem Mass Spectrometry

DiMaggio, Jr., Peter A., Floudas, Christodoulos A., Lu, Bingwen, Yates, III, John R.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 437 KB

english, 2008

44

Multiplexed Cell Signaling Analysis of Human Breast Cancer Applications for Personalized Therapy

Wulfkuhle, Julia D., Speer, Runa, Pierobon, Mariaelena, Laird, Julie, Espina, Virginia, Deng, Jianghong, Mammano, Enzo, Yang, Sherry X., Swain, Sandra M., Nitti, Donato, Esserman, Laura J., Belluco, C

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 9.82 MB

english, 2008

45

Online Automated in Vivo Zebrafish Phosphoproteomics: From Large-Scale Analysis Down to a Single Embryo

Lemeer, Simone, Pinkse, Martijn W. H., Mohammed, Shabaz, van Breukelen, Bas, den Hertog, Jeroen, Slijper, Monique, Heck, Albert J. R.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.00 MB

english, 2008

46

Sweet designs for an HIV-1 vaccine

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 418 KB

english, 2008

47

Targeting Therapy for Breast Carcinoma by ATP Synthase Inhibitor Aurovertin B

Huang, Tsui-Chin, Chang, Hsin-Yi, Hsu, Chun-Hua, Kuo, Wen-Hung, Chang, King-Jen, Juan, Hsueh-Fen

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 14.77 MB

english, 2008

48

Development and Application of a Two-Phase, On-Membrane Digestion Method in the Analysis of Membrane Proteome

Zhou, Jian, Lin, Yong, Deng, Xingcan, Shen, Jianying, He, Quanyuan, Chen, Ping, Wang, Xianchun, Liang, Songping

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 734 KB

english, 2008

49

NSAFs predict human protein interaction networks | Increasing the reliability of FDRs | CRAWDAD | Pinnacle

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 341 KB

english, 2008

50

Cerium Ion-Chelated Magnetic Silica Microspheres for Enrichment and Direct Determination of Phosphopeptides by Matrix-Assisted Laser Desorption Ionization Mass Spectrometry

Li, Yan, Qi, Dawei, Deng, Chunhui, Yang, Pengyuan, Zhang, Xiangmin

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.35 MB

english, 2008

51

Reproducibility of Mass Spectrometry Based Protein Profiles for Diagnosis of Breast Cancer across Clinical Studies: A Systematic Review

Callesen, Anne K., Vach, Werner, Jørgensen, Per E., Cold, Søren, Mogensen, Ole, Kruse, Torben A., Jensen, Ole N., Madsen, Jonna S.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 156 KB

english, 2008