Volume 7; Issue 9

Journal of Proteome Research

Volume 7; Issue 9

1

Metabonomic and Microbiological Analysis of the Dynamic Effect of Vancomycin-Induced Gut Microbiota Modification in the Mouse

Martin, Francois-Pierre, Davies, Huw, Wang, Yulan, Wilson, Ian D., Nicholson, Jeremy K., Utzinger, Jürg, Marchesi, Julian R., Yap, Ivan K. S., Li, Jia V., Saric, Jasmina

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 613 KB

english, 2008

2

Fine-Needle Aspiration of Thyroid Nodules: Proteomic Analysis To Identify Cancer Biomarkers

Giusti, Laura, Iacconi, Pietro, Ciregia, Federica, Giannaccini, Gino, Donatini, Gian Luca, Basolo, Fulvio, Miccoli, Paolo, Pinchera, Aldo, Lucacchini, Antonio

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.54 MB

english, 2008

3

Vav1 Modulates Protein Expression During ATRA-Induced Maturation of APL-Derived Promyelocytes: A Proteomic-Based Analysis

Bertagnolo, Valeria, Grassilli, Silvia, Bavelloni, Alberto, Brugnoli, Federica, Piazzi, Manuela, Candiano, Giovanni, Petretto, Andrea, Benedusi, Mascia, Capitani, Silvano

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 357 KB

english, 2008

4

Toward an Interaction Map of the Two-Component Signaling Pathway of Arabidopsis thaliana

Gruhn, Nijuscha, Pfeifer, Andreas, Dortay, Hakan, Schwerdtner, Mareike, Schmülling, Thomas, Heyl, Alexander

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 9.04 MB

english, 2008

5

The Construction of a Bioactive Peptide Database in Metazoa

Liu, Feng, Baggerman, Geert, Schoofs, Liliane, Wets, Geert

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 411 KB

english, 2008

6

Optimizing Sample Handling for Urinary Proteomics

Lee, Richard S., Monigatti, Flavio, Briscoe, Andrew C., Waldon, Zachary, Freeman, Michael R., Steen, Hanno

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 4.26 MB

english, 2008

7

Pronounced Alterations of Cellular Metabolism and Structure Due to Hyper- or Hypo-Osmosis

Mao, Lei, Hartl, Daniela, Nolden, Tobias, Koppelstätter, Andrea, Klose, Joachim, Himmelbauer, Heinz, Zabel, Claus

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 14.83 MB

english, 2008

8

Immobilized Metal Affinity Chromatography Revisited: pH/Acid Control toward High Selectivity in Phosphoproteomics

Tsai, Chia-Feng, Wang, Yi-Ting, Chen, Yet-Ran, Lai, Chen-Yu, Lin, Pei-Yi, Pan, Kuan-Ting, Chen, Jeou-Yuan, Khoo, Kay-Hooi, Chen, Yu-Ju

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 475 KB

english, 2008

9

SeMoP: A New Computational Strategy for the Unrestricted Search for Modified Peptides Using LC−MS/MS Data

Baumgartner, Christian, Rejtar, Tomas, Kullolli, Majlinda, Akella, Lakshmi Manohar, Karger, Barry L.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.08 MB

english, 2008

10

Overexpression of Rho GDP-Dissociation Inhibitor Alpha Is Associated with Tumor Progression and Poor Prognosis of Colorectal Cancer

Zhao, Liang, Wang, Hui, Li, Jianming, Liu, Yawei, Ding, Yanqing

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 432 KB

english, 2008

11

The Knowledge-Integrated Network Biomarkers Discovery for Major Adverse Cardiac Events

Jin, Guangxu, Zhou, Xiaobo, Wang, Honghui, Zhao, Hong, Cui, Kemi, Zhang, Xiang-Sun, Chen, Luonan, Hazen, Stanley L., Li, King, Wong, Stephen T. C.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.60 MB

english, 2008

12

Protein Interaction Data Set Highlighted with Human Ras-MAPK/PI3K Signaling Pathways

Wang, Jian, Yuan, Yanzhi, Zhou, Ying, Guo, Longhua, Zhang, Lingqiang, Kuai, Xuezhang, Deng, Binwei, Pan, Zhi, Li, Dong, He, Fuchu

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.55 MB

english, 2008

13

Quantitative Analysis of Redox-Sensitive Proteome with DIGE and ICAT

Fu, Cexiong, Hu, Jun, Liu, Tong, Ago, Tetsuro, Sadoshima, Junichi, Li, Hong

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 8.55 MB

english, 2008

14

Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics

Koenig, Thomas, Menze, Bjoern H., Kirchner, Marc, Monigatti, Flavio, Parker, Kenneth C., Patterson, Thomas, Steen, Judith Jebanathirajah, Hamprecht, Fred A., Steen, Hanno

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.50 MB

english, 2008

15

Experimental Evaluation of Protein Identification by an LC/MALDI/On-Target Digestion Approach

Getie-Kebtie, Melkamu, Franke, Peter, Aksamit, Robert, Alterman, Michail A.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 435 KB

english, 2008

16

Proteomics Analysis of Kojic Acid Treated A375 Human Malignant Melanoma Cells

Nawarak, Jiraporn, Huang-Liu, Rosa, Kao, Shao-Hsuan, Liao, Hsien-Hua, Sinchaikul, Supachok, Chen, Shui-Tein, Cheng, Sun-Long

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.66 MB

english, 2008

17

Detection of Ricin in Complex Samples by Immunocapture and Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry

Duriez, Elodie, Fenaille, François, Tabet, Jean-Claude, Lamourette, Patricia, Hilaire, Didier, Becher, François, Ezan, Eric

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.49 MB

english, 2008

18

Comparative Proteome, Transcriptome, and Genome Analysis of a Gonadal and an Extragonadal Germ Cell Tumor Cell Line

Glaesener, Stephanie, Honecker, Friedemann, Veltman, Imke M., Gillis, Ad J. M., Rohlfing, Tina, Streichert, Thomas, Otto, Benjamin, Brummendorf, Tim H., Looijenga, Leendert H. J., Bokemeyer, Carsten,

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 6.98 MB

english, 2008

19

Immediate Protein Targets of Photodynamic Treatment in Carcinoma Cells

Tsaytler, Pavel A., C. O’Flaherty, Martina, Sakharov, Dmitri V., Krijgsveld, Jeroen, Egmond, Maarten R.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.21 MB

english, 2008

20

DirecTag: Accurate Sequence Tags from Peptide MS/MS through Statistical Scoring

Tabb, David L., Ma, Ze-Qiang, Martin, Daniel B., Ham, Amy-Joan L., Chambers, Matthew C.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.54 MB

english, 2008

21

Proteomics-Based Identification of HSP60 as a Tumor-Associated Antigen in Early Stage Breast Cancer and Ductal Carcinoma in situ

Desmetz, C., Bibeau, F., Boissière, F., Bellet, V., Rouanet, P., Maudelonde, T., Mangé, A., Solassol, J.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 7.09 MB

english, 2008

22

Rapid Sample Processing for LC-MS-Based Quantitative Proteomics Using High Intensity Focused Ultrasound

López-Ferrer, Daniel, Heibeck, Tyler H., Petritis, Konstantinos, Hixson, Kim K., Qian, Weijun, Monroe, Matthew E., Mayampurath, Anoop, Moore, Ronald J., Belov, Mikhail E., Camp, David G., Smith, Rich

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.37 MB

english, 2008

23

Proteomic Analysis of Testis Biopsies in Men Treated with Injectable Testosterone Undecanoate Alone or in Combination with Oral Levonorgestrel as Potential Male Contraceptive

Cui, Yugui, Zhu, Hui, Zhu, Yefei, Guo, Xuejiang, Huo, Ran, Wang, Xinghai, Tong, Jiansun, Qian, Lixin, Zhou, Zuomin, Jia, Yue, Lue, Yan-he, Hikim, Amiya Sinha, Wang, Christina, Swerdloff, Ronald S., Sh

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 12.84 MB

english, 2008

24

Glycoproteomics of Milk: Differences in Sugar Epitopes on Human and Bovine Milk Fat Globule Membranes

Wilson, Nicole L., Robinson, Leanne J., Donnet, Anne, Bovetto, Lionel, Packer, Nicolle H., Karlsson, Niclas G.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.35 MB

english, 2008

25

NMR-Based Metabonomic Investigations into the Metabolic Profile of the Senescence-Accelerated Mouse

Jiang, Ning, Yan, Xianzhong, Zhou, Wenxia, Zhang, Qi, Chen, Hebing, Zhang, Yongxiang, Zhang, Xuemin

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.05 MB

english, 2008

26

Clinical and Pharmacogenomic Data Mining: 4. The FANO Program and Command Set as an Example of Tools for Biomedical Discovery and Evidence Based Medicine

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.48 MB

english, 2008

27

The hunt for metabolite biomarkers of malaria

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 158 KB

english, 2008

28

Global Metabolic Responses of NMRI Mice to an Experimental Plasmodium berghei Infection

Li, Jia V., Wang, Yulan, Saric, Jasmina, Nicholson, Jeremy K., Dirnhofer, Stephan, Singer, Burton H., Tanner, Marcel, Wittlin, Sergio, Holmes, Elaine, Utzinger, Jürg

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.80 MB

english, 2008

29

Application of Proteomic Tools To Detect the Nonspecificity of a Polyclonal Antibody against Lipoprotein Lipase

Casanovas, Albert, Carrascal, Montserrat, Abián, Joaquín, López-Tejero, M. Dolores, Llobera, Miquel

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.64 MB

english, 2008

30

Phosphorylation of SUMO-1 Occurs in Vivo and Is Conserved through Evolution

Matic, Ivan, Macek, Boris, Hilger, Maximiliane, Walther, Tobias C., Mann, Matthias

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.32 MB

english, 2008

31

Halobacterium salinarum NRC-1 PeptideAtlas: Toward Strategies for Targeted Proteomics and Improved Proteome Coverage

Van, Phu T., Schmid, Amy K., King, Nichole L., Kaur, Amardeep, Pan, Min, Whitehead, Kenia, Koide, Tie, Facciotti, Marc T., Goo, Young Ah, Deutsch, Eric W., Reiss, David J., Mallick, Parag, Baliga, Nit

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 802 KB

english, 2008

32

Identification of c-Src Tyrosine Kinase Substrates Using Mass Spectrometry and Peptide Microarrays

Amanchy, Ramars, Zhong, Jun, Molina, Henrik, Chaerkady, Raghothama, Iwahori, Akiko, Kalume, Dario Eluan, Grønborg, Mads, Joore, Jos, Cope, Leslie, Pandey, Akhilesh

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.17 MB

english, 2008

33

Identification and Network of Outer Membrane Proteins Regulating Streptomysin Resistance in Escherichia coli

Li, Hui, Wang, Bao-Cheng, Xu, Wen-Jiao, Lin, Xiang-Min, Peng, Xuan-Xian

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 9.30 MB

english, 2008

34

Proteome Response to the Panneural Expression of Human Wild-Type α-Synuclein: A Drosophila Model of Parkinson’s Disease

Xun, Zhiyin, Kaufman, Thomas C., Clemmer, David E.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.52 MB

english, 2008

35

Quantitative Proteomic Signature of Liver Cancer Cells: Tissue Transglutaminase 2 Could Be a Novel Protein Candidate of Human Hepatocellular Carcinoma

Sun, Yulin, Mi, Wei, Cai, Jianqiang, Ying, Wantao, Liu, Fang, Lu, Haizhen, Qiao, Yuanyuan, Jia, Wei, Bi, Xinyu, Lu, Ning, Liu, Shangmei, Qian, Xiaohong, Zhao, Xiaohang

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 6.76 MB

english, 2008

36

Enrichment of Phosphopeptides Using Biphasic Immobilized Metal Affinity-Reversed Phase Microcolumns

Schilling, Michael, Knapp, Daniel R.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 425 KB

english, 2008

37

Potential Involvement of MYC- and p53-Related Pathways in Tumorigenesis in Human Oral Squamous Cell Carcinoma Revealed by Proteomic Analysis

Koehn, Jadranka, Krapfenbauer, Kurt, Huber, Susanna, Stein, Elisabeth, Sutter, Walter, Watzinger, Franz, Erovic, Boban M., Thurnher, Dietmar, Schindler, Thomas, Fountoulakis, Michael, Turhani, Dritan

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 17.71 MB

english, 2008

38

Specific Phosphopeptide Enrichment with Immobilized Titanium Ion Affinity Chromatography Adsorbent for Phosphoproteome Analysis

Zhou, Houjiang, Ye, Mingliang, Dong, Jing, Han, Guanghui, Jiang, Xinning, Wu, Renan, Zou, Hanfa

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.25 MB

english, 2008

39

Using Proteomic Approach to Identify Tumor-Associated Antigens as Markers in Hepatocellular Carcinoma

Looi, Kok Sun, Nakayasu, Ernesto S., Diaz, Raquel A. de, Tan, Eng M., Almeida, Igor C., Zhang, Jian-Ying

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.77 MB

english, 2008

40

NIAID Biodefense Proteomics Research Centers

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.20 MB

english, 2008

41

Comparative Proteomic Analysis of Matched Primary and Metastatic Melanoma Cell Lines

Al-Ghoul, Mohammad, Brück, Thomas B., Lauer-Fields, Janelle L., Asirvatham, Victor S., Zapata, Claudia, Kerr, Russell G., Fields, Gregg B.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.75 MB

english, 2008

42

Network of proteins involved in antibiotic resistance

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 127 KB

english, 2008

43

A Preliminary Study of Metalloproteins in CSF by CapLC-ICPMS and NanoLC-CHIP/ITMS

Ellis, Jenny, Del Castillo, Estela, Montes Bayon, Maria, Grimm, Rudolf, Clark, Joseph F., Pyne-Geithman, Gail, Wilbur, Steve, Caruso, Joseph A.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.16 MB

english, 2008

44

Identification and Characterization of Novel Immunogenic Proteins of Streptococcus suis Serotype 2

Geng, Hongran, Zhu, Li, Yuan, Yuan, Zhang, Wei, Li, Wenjun, Wang, Jie, Zheng, Yuling, Wei, Kaihua, Cao, Wuchun, Wang, Hengliang, Jiang, Yongqiang

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 5.47 MB

english, 2008

45

Reductive Glutaraldehydation of Amine Groups for Identification of Protein N-termini

Russo, Allison, Chandramouli, Nagarajan, Zhang, Linqi, Deng, Haiteng

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 212 KB

english, 2008

46

Precursor-Ion Mass Re-Estimation Improves Peptide Identification on Hybrid Instruments

Luethy, Roland, Kessner, Darren E., Katz, Jonathan E., MacLean, Brendan, Grothe, Robert, Kani, Kian, Faça, Vitor, Pitteri, Sharon, Hanash, Samir, Agus, David B., Mallick, Parag

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.12 MB

english, 2008

47

Evaluation of the Combination of Bead Technology with SELDI-TOF-MS and 2-D DIGE for Detection of Plasma Proteins

Sihlbom, Carina, Kanmert, Ida, Bahr, Helena von, Davidsson, Pia

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 4.26 MB

english, 2008

48

The Metabolome-Wide Association Study: A New Look at Human Disease Risk Factors

Nicholson, Jeremy K., Holmes, Elaine, Elliott, Paul

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 112 KB

english, 2008

49

Nonlinear Fitting Method for Determining Local False Discovery Rates from Decoy Database Searches

Tang, Wilfred H., Shilov, Ignat V., Seymour, Sean L.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.90 MB

english, 2008

50

IPO-38 Is Identified as a Novel Serum Biomarker of Gastric Cancer Based on Clinical Proteomics Technology

Hao, Yuan, Yu, Yingyan, Wang, Lishun, Yan, Min, Ji, Jun, Qu, Ying, Zhang, Jun, Liu, Bingya, Zhu, Zhenggang

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 7.72 MB

english, 2008

51

Automated SPR-LC−MS/MS System for Protein Interaction Analysis

Hayano, Toshiya, Yamauchi, Yoshio, Asano, Kazunobu, Tsujimura, Teruko, Hashimoto, Setsuko, Isobe, Toshiaki, Takahashi, Nobuhiro

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.83 MB

english, 2008

52

C-Terminal Phosphorylation of Murine Testis-Specific Histone H1t in Elongating Spermatids

Rose, Kristie L., Li, Andra, Zalenskaya, Irina, Zhang, Yun, Unni, Emmanuel, Hodgson, Kim C., Yu, Yaping, Shabanowitz, Jeffrey, Meistrich, Marvin L., Hunt, Donald F., Ausió, Juan

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.50 MB

english, 2008

53

Calendar

Journal:

Journal of Proteome Research

Year:

2008

File:

PDF, 3.75 MB

2008

54

Secretome-Based Identification of Mac-2 Binding Protein as a Potential Oral Cancer Marker Involved in Cell Growth and Motility

Weng, Li-Ping, Wu, Chih-Ching, Hsu, Bao-Lian, Chi, Lang-Ming, Liang, Ying, Tseng, Ching-Ping, Hsieh, Ling-Ling, Yu, Jau-Song

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 7.32 MB

english, 2008

55

Comparative Proteomics of Tuber Induction, Development and Maturation Reveal the Complexity of Tuberization Process in Potato ( Solanum tuberosum L.)

Agrawal, Lalit, Chakraborty, Subhra, Jaiswal, Dinesh Kumar, Gupta, Sonika, Datta, Asis, Chakraborty, Niranjan

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 11.56 MB

english, 2008

56

Proteomics of Multigenic Families from Species Underrepresented in Databases: The Case of Loquat ( Eriobotrya japonica Lindl.) Polyphenol Oxidases

Sellés-Marchart, Susana, Luque, Ignacio, Casado-Vela, Juan, Martínez-Esteso, Maria José, Bru-Martínez, Roque

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.56 MB

english, 2008

57

Electron Transfer Dissociation of iTRAQ Labeled Peptide Ions

Han, Hongling, Pappin, Darryl J., Ross, Philip L., McLuckey, Scott A.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.08 MB

english, 2008

58

An Optimized Predictive Strategy for Interactome Mapping †

Aryee, Martin J. A., Quackenbush, John

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 763 KB

english, 2008

59

Population Studies of Vitamin D Binding Protein Microheterogeneity by Mass Spectrometry Lead to Characterization of its Genotype-Dependent O-Glycosylation Patterns

Borges, Chad R., Jarvis, Jason W., Oran, Paul E., Nelson, Randall W.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 898 KB

english, 2008