Volume 8; Issue 10

Journal of Proteome Research

Volume 8; Issue 10

1

A Comprehensive Analysis of the Soybean Genes and Proteins Expressed under Flooding Stress using Transcriptome and Proteome Techniques

Komatsu, Setsuko, Yamamoto, Ryo, Nanjo, Yohei, Mikami, Yoji, Yunokawa, Harunobu, Sakata, Katsumi

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 498 KB

english, 2009

2

Serum Metabolite Profiling of Human Colorectal Cancer Using GC−TOFMS and UPLC−QTOFMS

Qiu, Yunping, Cai, Guoxiang, Su, Mingming, Chen, Tianlu, Zheng, Xiaojiao, Xu, Ye, Ni, Yan, Zhao, Aihua, Xu, Lisa X., Cai, Sanjun

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.29 MB

english, 2009

3

High Precision Quantitative Proteomics Using iTRAQ on an LTQ Orbitrap: A New Mass Spectrometric Method Combining the Benefits of All

Köcher, Thomas, Pichler, Peter, Schutzbier, Michael, Stingl, Christoph, Kaul, Axel, Teucher, Nils, Hasenfuss, Gerd, Penninger, Josef M., Mechtler, Karl

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.35 MB

english, 2009

4

MALDI-Ion Mobility Separation-Mass Spectrometry Imaging of Glucose-Regulated Protein 78 kDa (Grp78) in Human Formalin-Fixed, Paraffin-Embedded Pancreatic Adenocarcinoma Tissue Sections

Djidja, Marie-Claude, Claude, Emmanuelle, Snel, Marten F., Scriven, Peter, Francese, Simona, Carolan, Vikki, Clench, Malcolm R.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 489 KB

english, 2009

5

The Proteomic Analysis of Primary Cortical Astrocyte Cell Culture after Morphine Administration

Suder, Piotr, Bodzon-Kulakowska, Anna, Mak, Pawel, Bierczynska-Krzysik, Anna, Daszykowski, Michal, Walczak, Beata, Lubec, Gert, Kotlinska, Jolanta H., Silberring, Jerzy

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.93 MB

english, 2009

6

Comprehensive Proteomic Analysis of Human Endometrial Fluid Aspirate

Casado-Vela, Juan, Rodriguez-Suarez, Eva, Iloro, Ibon, Ametzazurra, Amagoia, Alkorta, Nere, García-Velasco, Juan Antonio, Matorras, Roberto, Prieto, Begoña, González, Sandra, Nagore, Daniel, Simón

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 395 KB

english, 2009

7

The Proapoptotic C16-ceramide-Dependent Pathway Requires the Death-Promoting Factor Btf in Colon Adenocarcinoma Cells

Rénert, Anne-Françoise, Leprince, Pierre, Dieu, Marc, Renaut, Jenny, Raes, Martine, Bours, Vincent, Chapelle, Jean-Paul, Piette, Jacques, Merville, Marie-Paule, Fillet, Marianne

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 415 KB

english, 2009

8

Metabolic Labeling and Protein Linearization Technology Allow the Study of Proteins Secreted by Cultured Cells in Serum-Containing Media

Colzani, M., Waridel, P., Laurent, J., Faes, E., Rüegg, C., Quadroni, M.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 276 KB

english, 2009

9

Analysis of the Plasma Peptidome from Pancreas Cancer Patients Connects a Peptide in Plasma to Overexpression of the Parent Protein in Tumors

Antwi, Kwasi, Hostetter, Galen, Demeure, Michael J., Katchman, Benjamin A., Decker, G. Anton, Ruiz, Yvette, Sielaff, Timothy D., Koep, Lawrence J., Lake, Douglas F.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.28 MB

english, 2009

10

Peptide Separations by On-Line MudPIT Compared to Isoelectric Focusing in an Off-Gel Format: Application to a Membrane-Enriched Fraction from C2C12 Mouse Skeletal Muscle Cells

Elschenbroich, Sarah, Ignatchenko, Vladimir, Sharma, Parveen, Schmitt-Ulms, Gerold, Gramolini, Anthony O., Kislinger, Thomas

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.89 MB

english, 2009

11

Subtractive Proteomic Approach to the Endometrial Carcinoma Invasion Front

Monge, Marta, Doll, Andreas, Colas, Eva, Gil-Moreno, Antonio, Castellvi, Josep, Garcia, Angel, Colome, Nuria, Perez-Benavente, Asummpcio, Pedrola, Nuria, Lopez-Lopez, Rafael, Dolcet, Xavier, Ramon y C

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 3.45 MB

english, 2009

12

MaRiMba: A Software Application for Spectral Library-Based MRM Transition List Assembly

Sherwood, Carly A., Eastham, Ashley, Lee, Lik Wee, Peterson, Amelia, Eng, Jimmy K., Shteynberg, David, Mendoza, Luis, Deutsch, Eric W., Risler, Jenni, Tasman, Natalie, Aebersold, Ruedi, Lam, Henry, Ma

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 305 KB

english, 2009

13

Differential Proteomic Analysis of STAT6 Knockout Mice Reveals New Regulatory Function in Liver Lipid Homeostasis

Iff, Joël, Wang, Wei, Sajic, Tatjana, Oudry, Nathalie, Gueneau, Estelle, Hopfgartner, Gérard, Varesio, Emmanuel, Szanto, Ildiko

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 4.55 MB

english, 2009

14

Multicolumn Separation Platform for Simultaneous Depletion and Prefractionation Prior to 2-DE for Facilitating In-Depth Serum Proteomics Profiling

Jmeian, Yazen, El Rassi, Ziad

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.00 MB

english, 2009

15

Quantitative Mitochondrial Phosphoproteomics Using iTRAQ on an LTQ-Orbitrap with High Energy Collision Dissociation

Boja, Emily S., Phillips, Darci, French, Stephanie A., Harris, Robert A., Balaban, Robert S.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 4.14 MB

english, 2009

16

Metabotyping of Biofluids Reveals Stress-Based Differences in Gut Permeability in Healthy Individuals

Rezzi, Serge, Martin, François-Pierre, Alonso, Carmen, Guilarte, Mar, Vicario, María, Ramos, Laura, Martínez, Cristina, Lobo, Beatriz, Saperas, Esteban, Malagelada, Juan Ramón, Santos, Javier, Koc

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.94 MB

english, 2009

17

Acid Elution and One-Dimensional Shotgun Analysis on an Orbitrap Mass Spectrometer: An Application to Drug Affinity Chromatography

Fernbach, Nora V., Planyavsky, Melanie, Müller, André, Breitwieser, Florian P., Colinge, Jacques, Rix, Uwe, Bennett, Keiryn L.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.94 MB

english, 2009

18

Novel twist on the biotin switch cracks endothelial cell S -nitrosoproteome

Perkel, Jeffrey M.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 232 KB

english, 2009

19

Analysis of Plasma Membrane Proteome in Soybean and Application to Flooding Stress Response

Komatsu, Setsuko, Wada, Takuya, Abaléa, Yann, Nouri, Mohammad-Zaman, Nanjo, Yohei, Nakayama, Norikazu, Shimamura, Satoshi, Yamamoto, Ryo, Nakamura, Takuji, Furukawa, Kiyoshi

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.12 MB

english, 2009

20

CLUE-TIPS, Clustering Methods for Pattern Analysis of LC−MS Data

Akella, Lakshmi Manohar, Rejtar, Tomas, Orazine, Christina, Hincapie, Marina, Hancock, William S.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 3.56 MB

english, 2009

21

Astrocyte proteins and morphine addiction

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.13 MB

english, 2009

22

ATP-Sensitive K + Channel Knockout Induces Cardiac Proteome Remodeling Predictive of Heart Disease Susceptibility

Arrell, D. Kent, Zlatkovic, Jelena, Kane, Garvan C., Yamada, Satsuki, Terzic, Andre

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 10.22 MB

english, 2009

23

Comprehensive Analysis of Conditioned Media from Ovarian Cancer Cell Lines Identifies Novel Candidate Markers of Epithelial Ovarian Cancer

Gunawardana, C. Geeth, Kuk, Cynthia, Smith, Chris R., Batruch, Ihor, Soosaipillai, Antoninus, Diamandis, Eleftherios P.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.19 MB

english, 2009

24

FPPI: Fusarium graminearum Protein−Protein Interaction Database

Zhao, Xing-Ming, Zhang, Xiao-Wei, Tang, Wei-Hua, Chen, Luonan

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 3.22 MB

english, 2009

25

Prediction of Novel Modifications by Unrestrictive Search of Tandem Mass Spectra

Na, Seungjin, Paek, Eunok

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.51 MB

english, 2009

26

Interaction with Checkpoint Kinase 1 Modulates the Recruitment of Nucleophosmin to Chromatin

Chen, Songbi, Maya-Mendoza, Apolinar, Zeng, Kang, Tang, Chi W., Sims, Paul F. G., Loric, Josip, Jackson, Dean A.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.90 MB

english, 2009

27

Kinetics of Proteolytic Reactions in Nanoporous Materials

Bi, Hongyan, Qiao, Liang, Busnel, Jean-Marc, Liu, Baohong, Girault, Hubert H.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 625 KB

english, 2009

28

Mass Spectrometric Characterization of the Surface-Associated 42 kDa Lipoprotein JlpA as a Glycosylated Antigen in Strains of Campylobacter jejuni

Scott, Nichollas E., Bogema, Daniel R., Connolly, Angela M., Falconer, Linda, Djordjevic, Steven P., Cordwell, Stuart J.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.91 MB

english, 2009

29

Hippocampal Protein Levels Related to Spatial Memory Are Different in the Barnes Maze and in the Multiple T-Maze

Zheng, Jun-Fang, Patil, Sudarshan S., Chen, Wei-Qiang, An, Wei, He, Jun-Qi, Höger, Harald, Lubec, Gert

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.69 MB

english, 2009

30

Global Proteome Analysis of Leptospira interrogans

Eshghi, Azad, Cullen, Paul A., Cowen, Laura, Zuerner, Richard L., Cameron, Caroline E.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.83 MB

english, 2009

31

BDNF-Induced Changes in the Expression of the Translation Machinery in Hippocampal Neurons: Protein Levels and Dendritic mRNA

Manadas, Bruno, Santos, Ana Rita, Szabadfi, Krisztina, Gomes, João R., Garbis, Spiros D., Fountoulakis, Michael, Duarte, Carlos B.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 3.66 MB

english, 2009

32

Toponomics Analysis of Drug-Induced Changes in Arachidonic Acid-Dependent Signaling Pathways during Spinal Nociceptive Processing

Linke, Bona, Pierre, Sandra, Coste, Ovidiu, Angioni, Carlo, Becker, Wiebke, Maier, Thorsten Jürgen, Steinhilber, Dieter, Wittpoth, Claus, Geisslinger, Gerd, Scholich, Klaus

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 3.67 MB

english, 2009

33

Correlating the Chemical Modification of Escherichia coli Ribosomal Proteins with Crystal Structure Data

Liu, Xiaohui, Reilly, James P.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.91 MB

english, 2009

34

Quantitative Analysis of the Human Spindle Phosphoproteome at Distinct Mitotic Stages

Malik, Rainer, Lenobel, René, Santamaria, Anna, Ries, Albert, Nigg, Erich A., Körner, Roman

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 3.64 MB

english, 2009

35

Toward Proteome-Scale Identification and Quantification of Isoaspartyl Residues in Biological Samples

Yang, Hongqian, Fung, Eva Y. M., Zubarev, Alexander R., Zubarev, Roman A.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 653 KB

english, 2009

36

Discovery of Retinoblastoma-Associated Binding Protein 46 as a Novel Prognostic Marker for Distant Metastasis in Nonsmall Cell Lung Cancer by Combined Analysis of Cancer Cell Secretome and Pleural Effusion Proteome

Wang, Chih-Liang, Wang, Chun-I, Liao, Pao-Chi, Chen, Chi-De, Liang, Ying, Chuang, Wen-Yu, Tsai, Ying-Huang, Chen, Hua-Chien, Chang, Yu-Sun, Yu, Jau-Song, Wu, Chih-Ching, Yu, Chia-Jung

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 3.19 MB

english, 2009

37

S-nitrosoproteome in Endothelial Cells Revealed by a Modified Biotin Switch Approach Coupled with Western Blot-Based Two-Dimensional Gel Electrophoresis

Huang, Bin, Liao, Chung Ling, Lin, Ya Ping, Chen, Shih Chung, Wang, Danny Ling

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.01 MB

english, 2009

38

Phosphorylated Proteins of the Mammalian Mitochondrial Ribosome: Implications in Protein Synthesis

Miller, Jennifer L., Cimen, Huseyin, Koc, Hasan, Koc, Emine C.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.37 MB

english, 2009

39

Analysis of Ewing Sarcoma (EWS)-Binding Proteins: Interaction with hnRNP M, U, and RNA-Helicases p68/72 within Protein−RNA Complexes

Pahlich, Steffen, Quero, Lilian, Roschitzki, Bernd, Leemann-Zakaryan, Ruzanna P., Gehring, Heinz

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 3.43 MB

english, 2009

40

Loss of Toll-like Receptor 2 and 4 Leads to Differential Induction of Endoplasmic Reticulum Stress and Proapoptotic Responses in the Intestinal Epithelium under Conditions of Chronic Inflammation

Messlik, Anja, Schmechel, Silke, Kisling, Sigrid, Bereswill, Stefan, Heimesaat, Markus M., Fischer, Andre, Göbel, Ulf, Haller, Dirk

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 3.16 MB

english, 2009

41

Stable Isotope Labeling and Label-Free Proteomics of Drosophila parkin Null Mutants

Xun, Zhiyin, Kaufman, Thomas C., Clemmer, David E.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.55 MB

english, 2009

42

Sifting through the p53 lung-cancer secretome

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.21 MB

english, 2009

43

Proteomic Analysis of Cytoskeleton-Associated RNA Binding Proteins in Developing Rice Seed

Doroshenk, Kelly A., Crofts, Andrew J., Morris, Robert T., Wyrick, John J., Okita, Thomas W.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.08 MB

english, 2009

44

Phosphorus-Based Absolutely Quantified Standard Peptides for Quantitative Proteomics

Zinn, Nico, Hahn, Bettina, Pipkorn, Rüdiger, Schwarzer, Dominik, Lehmann, Wolf D.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.24 MB

english, 2009

45

Heterogeneous Nuclear Ribonucleoprotein A1 Is Identified as a Potential Biomarker for Colorectal Cancer Based on Differential Proteomics Technology

Ma, Yan-Lei, Peng, Jia-Yuan, Zhang, Peng, Huang, Long, Liu, Wei-Jie, Shen, Tong-Yi, Chen, Hong-Qi, Zhou, Yu-Kun, Zhang, Ming, Chu, Zhao-Xin, Qin, Huan-Long

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.29 MB

english, 2009

46

‘Two-Stage Double-Technique Hybrid (TSDTH)’ Identification Strategy for the Analysis of BMP2-Induced Transdifferentiation of Premyoblast C2C12 Cells to Osteoblast

Kim, Byung-Gyu, Lee, Ji-Hyun, Ahn, Jung-Mo, Park, Sung Kyu, Cho, Ji-Hoon, Hwang, Daehee, Yoo, Jong-Shin, Yates, John R., Ryoo, Hyun-Mo, Cho, Je-Yoel

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 6.15 MB

english, 2009

47

Proteomic Study of Human Glioblastoma Multiforme Tissue Employing Complementary Two-Dimensional Liquid Chromatography- and Mass Spectrometry-Based Approaches

Melchior, Katja, Tholey, Andreas, Heisel, Sabrina, Keller, Andreas, Lenhof, Hans-Peter, Meese, Eckart, Huber, Christian G.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.56 MB

english, 2009

48

The Cell Line Secretome, a Suitable Tool for Investigating Proteins Released in Vivo by Tumors: Application to the Study of p53-Modulated Proteins Secreted in Lung Cancer Cells

Chenau, Jérôme, Michelland, Sylvie, de Fraipont, Florence, Josserand, Véronique, Coll, Jean-Luc, Favrot, Marie-Christine, Seve, Michel

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.16 MB

english, 2009

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