Volume 8; Issue 3

Journal of Proteome Research

Volume 8; Issue 3

1

Pathway-Based Biomarker Search by High-Throughput Proteomics Profiling of Secretomes

Lawlor, Kevin, Nazarian, Arpi, Lacomis, Lynne, Tempst, Paul, Villanueva, Josep

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 8.04 MB

english, 2009

2

Comparative Proteomic Analysis of Botrytis cinerea Secretome

Shah, Punit, Atwood, James A., Orlando, Ron, El Mubarek, Hind, Podila, Gopi K., Davis, Maria R.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 709 KB

english, 2009

3

Proteomics Analysis of Human Dentin Reveals Distinct Protein Expression Profiles

Park, Eun-Sung, Cho, Hye-Sim, Kwon, Tae-Geon, Jang, Sin-Nam, Lee, Sang-Han, An, Chang-Hyeon, Shin, Hong-In, Kim, Jae-Young, Cho, Je-Yoel

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 394 KB

english, 2009

4

Evaluation of the Variation in Sample Preparation for Comparative Proteomics Using Stable Isotope Labeling by Amino Acids in Cell Culture

Zhang, Guoan, Fenyö, David, Neubert, Thomas A.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 881 KB

english, 2009

5

The Effect of Temperature on the Proteome of Recombinant Pichia pastoris

Dragosits, Martin, Stadlmann, Johannes, Albiol, Joan, Baumann, Kristin, Maurer, Michael, Gasser, Brigitte, Sauer, Michael, Altmann, Friedrich, Ferrer, Pau, Mattanovich, Diethard

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 504 KB

english, 2009

6

Proteomic Analysis of Monkey Embryonic Stem Cell during Differentiation

Nasrabadi, Davood, Rezaei Larijani, Mehran, Pirhaji, Leila, Gourabi, Hamid, Shahverdi, Abdolhossein, Baharvand, Hossein, Salekdeh, Ghasem Hosseini

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 11.11 MB

english, 2009

7

Proteomic Analysis of Human Parotid Gland Exosomes by Multidimensional Protein Identification Technology (MudPIT)

Gonzalez-Begne, Mireya, Lu, Bingwen, Han, Xuemei, Hagen, Fred K., Hand, Arthur R., Melvin, James E., Yates,, John R.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 434 KB

english, 2009

8

Human Serum Proteins Fractionated by Preparative Partition Chromatography Prior to LC-ESI-MS/MS

Tucholska, Monika, Bowden, Peter, Jacks, Kellie, Zhu, Peihong, Furesz, Shirley, Dumbrovsky, Mila, Marshall, John

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 4.72 MB

english, 2009

9

Proteomic Analysis of a PDEF Ets Transcription Factor-Interacting Protein Complex

Cho, Je-Yoel, Lee, Minjung, Ahn, Jung-Mo, Park, Eun-Sung, Cho, Ji-Hoon, Lee, Seung-Jin, Kim, Byung-Gyu, Heo, Sun-Hee, Park, Hye-Jeong, Zerbini, Luiz F., Hwang, Daehee, Libermann, Towia A.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.67 MB

english, 2009

10

Ran GTPase Regulates Hemocytic Phagocytosis of Shrimp by Interaction with Myosin

Liu, Weifeng, Han, Fang, Zhang, Xiaobo

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.08 MB

english, 2009

11

Proteomics-Based Identification of Differentially-Expressed Proteins Including Galectin-1 in the Blood Plasma of Type 2 Diabetic Patients

Liu, XiaoJun, Feng, QiPing, Chen, Yong, Zuo, Jin, Gupta, Nishith, Chang, YongSheng, Fang, FuDe

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 3.27 MB

english, 2009

12

Intracellular Adaptation of Brucella abortus

Lamontagne, Julie, Forest, Anik, Marazzo, Elena, Denis, François, Butler, Heather, Michaud, Jean-François, Boucher, Lyne, Pedro, Ida, Villeneuve, Annie, Sitnikov, Dmitri, Trudel, Karine, Nassif, Naj

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 10.42 MB

english, 2009

13

Quantitative Matrix-Assisted Laser Desorption Ionization−Fourier Transform Ion Cyclotron Resonance (MALDI−FT-ICR) Peptide Profiling and Identification of Multiple-Sclerosis-Related Proteins

Stoop, Marcel P., Dekker, Lennard J., Titulaer, Mark K., Lamers, Robert-Jan A. N., Burgers, Peter C., Sillevis Smitt, Peter A. E., van Gool, Alain J., Luider, Theo M., Hintzen, Rogier Q.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 878 KB

english, 2009

14

Developmental Brain Protein Level Changes in the C57BL/6J Mouse

Myung, Jae-Kyung, Shim, Ki Shuk, Li, Lin, Höger, Harald, Lubec, Gert

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 6.55 MB

english, 2009

15

Tubeimoside-1 Exerts Cytotoxicity in HeLa Cells through Mitochondrial Dysfunction and Endoplasmic Reticulum Stress Pathways

Xu, Yang, Chiu, Jen-Fu, He, Qing-Yu, Chen, Feng

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 6.48 MB

english, 2009

16

Evidence for Novel Tomato Seed Allergens: IgE-Reactive Legumin and Vicilin Proteins Identified by Multidimensional Protein Fractionation−Mass Spectrometry and in Silico Epitope Modeling

Bässler, Olivia Y., Weiss, Julia, Wienkoop, Stefanie, Lehmann, Karola, Scheler, Christian, Dölle, Sabine, Schwarz, Dietmar, Franken, Philipp, George, Eckhard, Worm, Margitta, Weckwerth, Wolfram

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 7.90 MB

english, 2009

17

AOHUPO takes on membrane proteins

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 336 KB

english, 2009

18

Proteomic Analysis of Oil Mobilization in Seed Germination and Postgermination Development of Jatropha curcas

Yang, Ming-Feng, Liu, Yu-Jun, Liu, Yun, Chen, Hui, Chen, Fan, Shen, Shi-Hua

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 19.80 MB

english, 2009

19

Lysine Methylation of Nuclear Co-Repressor Receptor Interacting Protein 140

Huq, M. D. Mostaqul, Ha, Sung Gil, Barcelona, Helene, Wei, Li-Na

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.92 MB

english, 2009

20

Enterococcus faecalis Strains Differentially Regulate Alix/AIP1 Protein Expression and ERK 1/2 Activation in Intestinal Epithelial Cells in the Context of Chronic Experimental Colitis

Hoffmann, Micha, Kim, Sandra C., Sartor, R. Balfour, Haller, Dirk

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.99 MB

english, 2009

21

Identification of Phosphorylation-Dependent Binding Partners of Aquaporin-2 Using Protein Mass Spectrometry

Zwang, Nicholas A., Hoffert, Jason D., Pisitkun, Trairak, Moeller, Hanne B., Fenton, Robert A., Knepper, Mark A.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 17.14 MB

english, 2009

22

Quantitative Phosphoproteomics of Tomato Mounting a Hypersensitive Response Reveals a Swift Suppression of Photosynthetic Activity and a Differential Role for Hsp90 Isoforms

Stulemeijer, Iris J. E., Joosten, Matthieu H. A. J., Jensen, Ole N.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 4.15 MB

english, 2009

23

PLIPS, an Automatically Collected Database of Protein Lists Reported by Proteomics Studies

Antonov, Alexey V., Dietmann, Sabine, Wong, Philip, Igor, Rodchenkov, Mewes, Hans W.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 94 KB

english, 2009

24

An Integrated Top-Down and Bottom-Up Strategy for Broadly Characterizing Protein Isoforms and Modifications

Wu, Si, Lourette, Natacha M., Tolić, Nikola, Zhao, Rui, Robinson, Errol W., Tolmachev, Aleksey V., Smith, Richard D., Paša-Tolić, Ljiljana

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 3.53 MB

english, 2009

25

Proteomic Analysis of Honey Bee Brain upon Ontogenetic and Behavioral Development

Garcia, Liudy, Saraiva Garcia, Carlos H., Calábria, Luciana Karen, Costa Nunes da Cruz, Gabriel, Sánchez Puentes, Aniel, Báo, Sonia N., Fontes, Wagner, Ricart, Carlos A. O., Salmen Espindola, Foued

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 12.86 MB

english, 2009

26

Proteomic Expression Signature Distinguishes Cancerous and Nonmalignant Tissues in Hepatocellular Carcinoma

Lee, Nikki P., Chen, Lei, Lin, Marie C., Tsang, Felice H., Yeung, Chun, Poon, Ronnie T., Peng, Jirun, Leng, Xisheng, Beretta, Laura, Sun, Stella, Day, Philip J., Luk, John M.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 7.40 MB

english, 2009

27

QuatIdent: A Web Server for Identifying Protein Quaternary Structural Attribute by Fusing Functional Domain and Sequential Evolution Information

Shen, Hong-Bin, Chou, Kuo-Chen

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.18 MB

english, 2009

28

Application of Physicochemically Modified Silicon Substrates as Reverse-Phase Protein Microarrays

Nijdam, A. Jasper, Zianni, Michael R., Herderick, Edward E., Cheng, Mark M.-C., Prosperi, Jenifer R., Robertson, Fredika A., Petricoin, Emanuel F., Liotta, Lance A., Ferrari, Mauro

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 8.71 MB

english, 2009

29

Variability is low in some sample preparation methods

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 122 KB

english, 2009

30

Proteomic Analysis of Butyrate Effects and Loss of Butyrate Sensitivity in HT29 Colorectal Cancer Cells

Fung, Kim Y. C., Lewanowitsch, Tanya, Henderson, Steven T., Priebe, Ilka, Hoffmann, Peter, McColl, Shaun R., Lockett, Trevor, Head, Richard, Cosgrove, Leah J.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.18 MB

english, 2009

31

Use of Differential Isotopic Labeling and Mass Spectrometry To Analyze Capacitation-Associated Changes in the Phosphorylation Status of Mouse Sperm Proteins

Platt, Mark D., Salicioni, Ana M., Hunt, Donald F., Visconti, Pablo E.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.22 MB

english, 2009

32

Transcription Factor TBX1 Overexpression Induces Downregulation of Proteins Involved in Retinoic Acid Metabolism: A Comparative Proteomic Analysis

Caterino, Marianna, Ruoppolo, Margherita, Fulcoli, Gabriella, Huynth, Tuong, Orrù, Stefania, Baldini, Antonio, Salvatore, Francesco

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 3.16 MB

english, 2009

33

Stable Isotope Dilution Multidimensional Liquid Chromatography-Tandem Mass Spectrometry for Pancreatic Cancer Serum Biomarker Discovery

Yu, Kenneth H., Barry, Colin G., Austin, David, Busch, Christine M., Sangar, Vineet, Rustgi, Anil K., Blair, Ian A.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.36 MB

english, 2009

34

Detection of Metabolic Alterations in Non-tumor Gastrointestinal Tissue of the Apc Min/+ Mouse by 1 H MAS NMR Spectroscopy

Backshall, Alexandra, Alferez, Denis, Teichert, Friederike, Wilson, Ian D., Wilkinson, Robert W., Goodlad, Robert A., Keun, Hector C.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.19 MB

english, 2009

35

Analysis of Neuropeptide Expression and Localization in Adult Drosophila melanogaster Central Nervous System by Affinity Cell-Capture Mass Spectrometry

Yew, Joanne Y., Wang, Yun, Barteneva, Natasha, Dikler, Sergei, Kutz-Naber, Kimberly K., Li, Lingjun, Kravitz, Edward A.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 7.52 MB

english, 2009

36

Temporal Analysis of Neural Differentiation Using Quantitative Proteomics †

Chaerkady, Raghothama, Kerr, Candace L., Marimuthu, Arivusudar, Kelkar, Dhanashree S., Kashyap, Manoj Kumar, Gucek, Marjan, Gearhart, John D., Pandey, Akhilesh

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 11.47 MB

english, 2009

37

Transcriptome and Proteome Analysis of Osteocytes Treated with Nitrogen-Containing Bisphosphonates

Bivi, Nicoletta, Bereszczak, Jessica Z., Romanello, Milena, Zeef, Leo A. H., Delneri, Daniela, Quadrifoglio, Franco, Moro, Luigi, Brancia, Francesco L., Tell, Gianluca

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 3.25 MB

english, 2009

38

Proteomic Analyses Using Grifola frondosa Metalloendoprotease Lys-N

Hohmann, Laura, Sherwood, Carly, Eastham, Ashley, Peterson, Amelia, Eng, Jimmy K., Eddes, James S., Shteynberg, David, Martin, Daniel B.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.58 MB

english, 2009

39

A Method for Investigating Protein−Protein Interactions Related to Salmonella Typhimurium Pathogenesis

Chowdhury, Saiful M., Shi, Liang, Yoon, Hyunjin, Ansong, Charles, Rommereim, Leah M., Norbeck, Angela D., Auberry, Kenneth J., Moore, Ronald J., Adkins, Joshua N., Heffron, Fred, Smith, Richard D.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.53 MB

english, 2009

40

Automated 2D Peptide Separation on a 1D Nano-LC-MS System

Taylor, Paul, Nielsen, Peter A., Trelle, Morten B., Hørning, Ole B., Andersen, Michael B., Vorm, Ole, Moran, Michael F., Kislinger, Thomas

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.04 MB

english, 2009

41

Phosphorylation puts sperm in the mood

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 726 KB

english, 2009

42

Calendar

Journal:

Journal of Proteome Research

Year:

2009

File:

PDF, 806 KB

2009

43

Identification of S100A8 and S100A9 as Serological Markers for Colorectal Cancer

Kim, Hye-Jung, Kang, Hyun Ju, Lee, Hanna, Lee, Seung-Taek, Yu, Myeong-Hee, Kim, Hoguen, Lee, Cheolju

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 10.00 MB

english, 2009

44

Cysteine Peptidase Expression in Trichomonas vaginalis Isolates Displaying High- and Low-Virulence Phenotypes

De Jesus, Jose Batista, Cuervo, Patrícia, Britto, Constança, Sabóia-Vahia, Leonardo, Costa e Silva-Filho, Fernando, Borges-Veloso, Andre, Barreiros Petrópolis, Débora, Cupolillo, Elisa, Barbosa D

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 8.10 MB

english, 2009

45

Ribosomal Proteins of Deinococcus radiodurans : Their Solvent Accessibility and Reactivity

Running, William E., Reilly, James P.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 19.11 MB

english, 2009

46

Strategy for Glycoproteomics: Identification of Glyco-Alteration Using Multiple Glycan Profiling Tools †

Ito, Hiromi, Kuno, Atsushi, Sawaki, Hiromichi, Sogabe, Maki, Ozaki, Hidenori, Tanaka, Yasuhito, Mizokami, Masashi, Shoda, Jun-ichi, Angata, Takashi, Sato, Takashi, Hirabayashi, Jun, Ikehara, Yuzuru, N

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.02 MB

english, 2009

47

Differential Protein Mapping of Ovarian Serous Adenocarcinomas: Identification of Potential Markers for Distinct Tumor Stage

Wang, Yanfei, Wu, Rong, Cho, Kathleen R., Thomas, Dafydd G., Gossner, Gabrielle, Liu, J. Rebecca, Giordano, Thomas J., Shedden, Kerby A., Misek, David E., Lubman, David M.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 12.34 MB

english, 2009

48

Insight into the Sialome of the Black Fly, Simulium vittatum

Andersen, John F., Pham, Van M., Meng, Zhaojing, Champagne, Donald E., Ribeiro, José M. C.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 9.38 MB

english, 2009

49

Shrimp study exposes mechanisms of innate immunity

Perkel, Jeffrey M.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.25 MB

english, 2009

50

Detection of Differential Proteomes of Human β-Cells During Islet-Like Differentiation Using iTRAQ Labeling

Jin, Jonghwa, Park, Jungeun, Kim, Kyunggon, Kang, Yup, Park, Sang Gyu, Kim, Jae Hyeon, Park, Kyong Soo, Jun, Heesook, Kim, Youngsoo

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.93 MB

english, 2009

51

High-Throughput Glycome Analysis Is Set To Join High-Throughput Genomics

Rudd, Pauline M., Rudan, Igor, Wright, Alan F.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 108 KB

english, 2009

52

Quantification of Isotopically Overlapping Deamidated and 18 O-Labeled Peptides Using Isotopic Envelope Mixture Modeling

Dasari, Surendra, Wilmarth, Phillip A., Reddy, Ashok P., Robertson, Lucinda J. G., Nagalla, Srinivasa R., David, Larry L.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.63 MB

english, 2009