Volume 9; Issue 4

Journal of Proteome Research

Volume 9; Issue 4

1

Proteomic Analysis of Tumor Necrosis Factor-α-Induced Secretome of Human Adipose Tissue-Derived Mesenchymal Stem Cells

Lee, Mi Jeong, Kim, Jaeyoon, Kim, Min Young, Bae, Yoe-Sik, Ryu, Sung Ho, Lee, Taehoon G., Kim, Jae Ho

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 1.19 MB

english, 2010

2

Workflow Comparison for Label-Free, Quantitative Secretome Proteomics for Cancer Biomarker Discovery: Method Evaluation, Differential Analysis, and Verification in Serum

Piersma, Sander R., Fiedler, Ulrike, Span, Simone, Lingnau, Andreas, Pham, Thang V., Hoffmann, Steffen, Kubbutat, Michael H. G., Jiménez, Connie R.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 1.06 MB

english, 2010

3

High-Yield Peptide-Extraction Method for the Discovery of Subnanomolar Biomarkers from Small Serum Samples

Kawashima, Yusuke, Fukutomi, Toshiyuki, Tomonaga, Takeshi, Takahashi, Hiroki, Nomura, Fumio, Maeda, Tadakazu, Kodera, Yoshio

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 633 KB

english, 2010

4

Proteomic Analysis of an Interactome for Long-Form AMPA Receptor Subunits

Duarte, Carlos B., Carvalho, Ana Luísa, Santos, Sandra D., Manadas, Bruno

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 2.02 MB

english, 2010

5

Classification of HER2 Receptor Status in Breast Cancer Tissues by MALDI Imaging Mass Spectrometry

Rauser, Sandra, Marquardt, Claudio, Balluff, Benjamin, Deininger, Sören-Oliver, Albers, Christian, Belau, Eckhard, Hartmer, Ralf, Suckau, Detlev, Specht, Katja, Ebert, Matthias Philip, Schmitt, Manfr

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 527 KB

english, 2010

6

Identification of a Novel Family of Snake Venom Proteins Veficolins from Cerberus rynchops Using a Venom Gland Transcriptomics and Proteomics Approach

OmPraba, G., Chapeaurouge, Alex, Doley, Robin, Devi, K. Rama, Padmanaban, P., Venkatraman, C., Velmurugan, D., Lin, Qingsong, Kini, R. Manjunatha

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 8.94 MB

english, 2010

7

1DE proves its worth... again

Cottingham, Katie

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 1.81 MB

english, 2010

8

Analysis of Detergent-Insoluble and Whole Cell Lysate Fractions of Resting Neutrophils Using High-Resolution Mass Spectrometry

Tomazella, Gisele G., daSilva, Idalete, Thomé, Carolina H., Greene, Lewis J., Koehler, Christian J., Thiede, Bernd, Wiker, Harald G., de Souza, Gustavo A.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 1.94 MB

english, 2010

9

Proteomic Analysis of the Enterococcus faecalis V583 Strain and Clinical Isolate V309 under Vancomycin Treatment

Wang, Xuesong, He, Xiang, Jiang, Zheng, Wang, Jie, Chen, Xuannan, Liu, Dawei, Wang, Fang, Guo, Yanhong, Zhao, Jiangli, Liu, Feng, Huang, Liuyu, Yuan, Jing

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 411 KB

english, 2010

10

Reconstruction and Analysis of Human Liver-Specific Metabolic Network Based on CNHLPP Data

Zhao, Jing, Geng, Chao, Tao, Lin, Zhang, Duanfeng, Jiang, Ying, Tang, Kailin, Zhu, Ruixin, Yu, Hong, Zhang, Weidong, He, Fuchu, Li, Yixue, Cao, Zhiwei

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 1.69 MB

english, 2010

11

Metabolomic Analysis Identifies Inflammatory and Noninflammatory Metabolic Effects of Genetic Modification in a Mouse Model of Crohn’s Disease

Lin, Hui-Ming, Barnett, Matthew P.G., Roy, Nicole C., Joyce, Nigel I., Zhu, Shuotun, Armstrong, Kelly, Helsby, Nuala A., Ferguson, Lynnette R., Rowan, Daryl D.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 1.45 MB

english, 2010

12

Proteomics of Hepatocellular Carcinoma: Serum Vimentin As a Surrogate Marker for Small Tumors (≤2 cm)

Sun, Stella, Poon, Ronnie T. P., Lee, Nikki P., Yeung, Chun, Chan, K. L., Ng, Irene O. L., Day, Philip J. R., Luk, John M.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 1.69 MB

english, 2010

13

Characterization of Cell Cycle Specific Protein Interaction Networks of the Yeast 26S Proteasome Complex by the QTAX Strategy

Kaake, Robyn M., Milenković, Tijana, Pržulj, Nataša, Kaiser, Peter, Huang, Lan

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 3.60 MB

english, 2010

14

Multimethodological Approach to Identification of Glycoproteins from the Proteome of Francisella tularensis , an Intracellular Microorganism

Balonova, Lucie, Hernychova, Lenka, Mann, Benjamin F., Link, Marek, Bilkova, Zuzana, Novotny, Milos V., Stulik, Jiri

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 4.63 MB

english, 2010

15

Associating Growth-Phase-Related Changes in the Proteome of Acinetobacter baumannii with Increased Resistance to Oxidative Stress

Soares, Nelson C., Cabral, Maria P., Gayoso, Carmen, Mallo, Susana, Rodriguez-Velo, Patricia, Fernández-Moreira, Esteban, Bou, Germán

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 1.63 MB

english, 2010

16

Multisite Phosphorylation of Voltage-Gated Sodium Channel α Subunits from Rat Brain

Berendt, Frank J., Park, Kang-Sik, Trimmer, James S.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 4.32 MB

english, 2010

17

ABA-Regulated G Protein Signaling in Arabidopsis Guard Cells: A Proteomic Perspective

Zhao, Zhixin, Stanley, Bruce A., Zhang, Wei, Assmann, Sarah M.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 277 KB

english, 2010

18

A New Algorithm for the Simulation of Sodium Dodecil Sulfate Two-Dimensional Polyacrylamide Gel Electrophoresis Data Sets

Marengo, Emilio, Demartini, Marco, Robotti, Elisa, Bobba, Marco

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 1.69 MB

english, 2010

19

Mass Spectrometry-Based GPCR Proteomics: Comprehensive Characterization of the Human Cannabinoid 1 Receptor

Zvonok, Nikolai, Xu, Wei, Williams, John, Janero, David R., Krishnan, Srinivasan C., Makriyannis, Alexandros

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 2.37 MB

english, 2010

20

Tooth−gum border fluid constituents mapped

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 2.42 MB

english, 2010

21

Regional Heterogeneity and Diversity in Cytokine and Chemokine Production by Astroglia: Differential Responses to HIV-1 Tat, gp120, and Morphine Revealed by Multiplex Analysis

Fitting, Sylvia, Zou, Shiping, Chen, Wen, Vo, Phu, Hauser, Kurt F., Knapp, Pamela E.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 3.25 MB

english, 2010

22

Strategy for Studying the Liver Secretome on the Organ Level

Zhang, Yang, Wang, Yan, Sun, Wei, Jia, Lulu, Ma, Sucan, Gao, Youhe

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 3.04 MB

english, 2010

23

Dominant Processes during Human Dendritic Cell Maturation Revealed by Integration of Proteome and Transcriptome at the Pathway Level

Buschow, Sonja I., Lasonder, Edwin, van Deutekom, Hanneke W. M., Oud, Machteld M., Beltrame, Luca, Huynen, Martijn A., de Vries, I. Jolanda M., Figdor, Carl G., Cavalieri, Duccio

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 378 KB

english, 2010

24

Mapping the Expression of Soluble Olfactory Proteins in the Honeybee

Dani, Francesca Romana, Iovinella, Immacolata, Felicioli, Antonio, Niccolini, Alberto, Calvello, Maria Antonietta, Carucci, Maria Giovanna, Qiao, Huili, Pieraccini, Giuseppe, Turillazzi, Stefano, Mone

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 4.40 MB

english, 2010

25

Identification of ΔNp63α Protein Interactions by Mass Spectrometry

Amoresano, Angela, Di Costanzo, Antonella, Leo, Gabriella, Di Cunto, Ferdinando, La Mantia, Girolama, Guerrini, Luisa, Calabrò, Viola

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 1.43 MB

english, 2010

26

Introduction of 4-Chloro-α-cyanocinnamic Acid Liquid Matrices for High Sensitivity UV-MALDI MS

Towers, Mark W., Mckendrick, John E., Cramer, Rainer

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 4.92 MB

english, 2010

27

Phosphopeptide Analysis Reveals Two Discrete Clusters of Phosphorylation in the N-Terminus and the Roc Domain of the Parkinson-Disease Associated Protein Kinase LRRK2

Gloeckner, Christian Johannes, Boldt, Karsten, von Zweydorf, Felix, Helm, Sandra, Wiesent, Ludwig, Sarioglu, Hakan, Ueffing, Marius

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 3.16 MB

english, 2010

28

Subcellular Quantitative Proteomics Reveals Multiple Pathway Cross-Talk That Coordinates Specific Signaling and Transcriptional Regulation for the Early Host Response to LPS

Du, Ruyun, Long, Jing, Yao, Jun, Dong, Yun, Yang, Xiaoli, Tang, Siwei, Zuo, Shuai, He, Yufei, Chen, Xian

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 5.75 MB

english, 2010

29

Identification of Novel Interacting Protein Partners of SMN Using Tandem Affinity Purification

Shafey, Dina, Boyer, Justin G., Bhanot, Kunal, Kothary, Rashmi

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 1.64 MB

english, 2010

30

Identification of Novel Protein Kinase A Phosphorylation Sites in the M-domain of Human and Murine Cardiac Myosin Binding Protein-C Using Mass Spectrometry Analysis

Jia, Weitao, Shaffer, Justin F., Harris, Samantha P., Leary, Julie A.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 1.85 MB

english, 2010

31

GlycoExtractor: A Web-Based Interface for High Throughput Processing of HPLC-Glycan Data

Artemenko, Natalia V., Campbell, Matthew P., Rudd, Pauline M.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 603 KB

english, 2010

32

Vimentin Is a Functional Partner of Hormone Sensitive Lipase And Facilitates Lipolysis

Shen, Wen-Jun, Patel, Shailja, Eriksson, John E., Kraemer, Fredric B.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 897 KB

english, 2010

33

TagRecon: High-Throughput Mutation Identification through Sequence Tagging

Dasari, Surendra, Chambers, Matthew C., Slebos, Robbert J., Zimmerman, Lisa J., Ham, Amy-Joan L., Tabb, David L.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 2.48 MB

english, 2010

34

Antigen Identification and Characterization of Lung Cancer Specific Monoclonal Antibodies Produced by mAb Proteomics

Wang, Dongdong, Hincapie, Marina, Guergova-Kuras, Mariana, Kadas, Janos, Takacs, Laszlo, Karger, Barry L.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 2.72 MB

english, 2010

35

Neuropeptidomics of the Mosquito Aedes aegypti

Predel, Reinhard, Neupert, Susanne, Garczynski, Stephen F., Crim, Joe W., Brown, Mark R., Russell, William K., Kahnt, Jörg, Russell, David H., Nachman, Ronald J.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 973 KB

english, 2010

36

Blood Folate Status and Expression of Proteins Involved in Immune Function, Inflammation, and Coagulation: Biochemical and Proteomic Changes in the Plasma of Humans in Response to Long-Term Synthetic Folic Acid Supplementation

Duthie, Susan J., Horgan, Graham, de Roos, Baukje, Rucklidge, Garry, Reid, Martin, Duncan, Gary, Pirie, Lynn, Basten, Graham P., Powers, Hilary J.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 643 KB

english, 2010

37

Optimizing Performance of Glycopeptide Capture for Plasma Proteomics

Berven, Frode S., Ahmad, Rushdy, Clauser, Karl R., Carr, Steven A.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 750 KB

english, 2010

38

Site-Specific IGFBP-1 Hyper-Phosphorylation in Fetal Growth Restriction: Clinical and Functional Relevance

Abu Shehab, Majida, Khosravi, Javad, Han, Victor K. M., Shilton, Brian H., Gupta, Madhulika B.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 1.58 MB

english, 2010

39

Mass Spectrometric Analyses of Peptides and Proteins in Human Gingival Crevicular Fluid

Ngo, Luan H., Veith, Paul D., Chen, Yu-Yen, Chen, Dina, Darby, Ivan B., Reynolds, Eric C.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 1.43 MB

english, 2010

40

Quantitative Analysis of Proteome Coverage and Recovery Rates for Upstream Fractionation Methods in Proteomics

Fang, Yuan, Robinson, Dale P., Foster, Leonard J.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 2.66 MB

english, 2010

41

Evidence of Altered Guinea Pig Ventricular Cardiomyocyte Protein Expression and Growth in Response to a 5 min in vitro Exposure to H 2 O 2

Seenarain, Vidya, Viola, Helena M., Ravenscroft, Gianina, Casey, Tammy M., Lipscombe, Richard J., Ingley, Evan, Laing, Nigel G., Bringans, Scott D., Hool, Livia C.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 2.98 MB

english, 2010

42

Organization of the Sec61 Translocon, Studied by High Resolution Native Electrophoresis

Dejgaard, Kurt, Theberge, Jean-Francois, Heath-Engel, Hannah, Chevet, Eric, Tremblay, Michel L., Thomas, David Y.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 996 KB

english, 2010