Volume 157; Issue 3

Journal of Structural Biology

Volume 157; Issue 3

1

Flap opening dynamics in HIV-1 protease explored with a coarse-grained model

Valentina Tozzini, Joanna Trylska, Chia-en Chang, J. Andrew McCammon

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 1.41 MB

english, 2007

2

Assembly of lipoprotein particles revealed by coarse-grained molecular dynamics simulations

Amy Y. Shih, Peter L. Freddolino, Anton Arkhipov, Klaus Schulten

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 1.46 MB

english, 2007

3

Local structure formation in simulations of two small proteins

Guha Jayachandran, V. Vishal, Angel E. García, Vijay S. Pande

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 812 KB

english, 2007

4

Exploring the energy landscape of protein folding using replica-exchange and conventional molecular dynamics simulations

David A.C. Beck, George W.N. White, Valerie Daggett

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 432 KB

english, 2007

5

Coarse-grained molecular dynamics simulations of membrane proteins and peptides

Peter J. Bond, John Holyoake, Anthony Ivetac, Syma Khalid, Mark S.P. Sansom

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 2.38 MB

english, 2007

6

Electric field effects on membranes: Gramicidin A as a test ground

Shirley W.I. Siu, Rainer A. Böckmann

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 2.02 MB

english, 2007

7

Gap compression/extension mechanism of bacterial flagellar hook as the molecular universal joint

Tadaomi Furuta, Fadel A. Samatey, Hideyuki Matsunami, Katsumi Imada, Keiichi Namba, Akio Kitao

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 2.33 MB

english, 2007

8

Suppression of the back proton-transfer from Asp85 to the retinal Schiff base in bacteriorhodopsin: A theoretical analysis of structural elements

Ana-Nicoleta Bondar, Sándor Suhai, Stefan Fischer, Jeremy C. Smith, Marcus Elstner

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 795 KB

english, 2007

9

Modeling the charge distribution at metal sites in proteins for molecular dynamics simulations

M. Dal Peraro, Katrin Spiegel, Guillaume Lamoureux, Marco De Vivo, William F. DeGrado, Michael L. Klein

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 602 KB

english, 2007

10

Multiscale simulation of transmembrane proteins

Gary S. Ayton, Gregory A. Voth

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 1.25 MB

english, 2007

11

High performance computing in biology: Multimillion atom simulations of nanoscale systems

K.Y. Sanbonmatsu, C.-S. Tung

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 1.85 MB

english, 2007

12

Replica exchange simulation of reversible folding/unfolding of the Trp-cage miniprotein in explicit solvent: On the structure and possible role of internal water

Dietmar Paschek, Hugh Nymeyer, Angel E. García

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 1.38 MB

english, 2007

13

Fluctuations of primary ubiquitin folding intermediates in a force clamp

Frauke Gräter, Helmut Grubmüller

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 2.74 MB

english, 2007

14

Exploring gas permeability of cellular membranes and membrane channels with molecular dynamics

Yi Wang, Jordi Cohen, Walter F. Boron, Klaus Schulten, Emad Tajkhorshid

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 2.85 MB

english, 2007

15

Special issue: Advances in molecular dynamics simulations

Helmut Grubmüller, Klaus Schulten

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 65 KB

english, 2007

16

Cover 2 - Editorial Board

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 741 KB

english, 2007

17

Table of Contents / barcode

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 36 KB

english, 2007

18

A study of collective atomic fluctuations and cooperativity in the U1A–RNA complex based on molecular dynamics simulations

Bethany L. Kormos, Anne M. Baranger, David L. Beveridge

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 1.56 MB

english, 2007

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