Volume 11; Issue 6

Molecular & Cellular Proteomics

Volume 11; Issue 6

1

Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

Gillet, L. C., Navarro, P., Tate, S., Rost, H., Selevsek, N., Reiter, L., Bonner, R., Aebersold, R.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 2.16 MB

english, 2012

2

Interlaboratory Evaluation of Automated, Multiplexed Peptide Immunoaffinity Enrichment Coupled to Multiple Reaction Monitoring Mass Spectrometry for Quantifying Proteins in Plasma

Kuhn, E., Whiteaker, J. R., Mani, D. R., Jackson, A. M., Zhao, L., Pope, M. E., Smith, D., Rivera, K. D., Anderson, N. L., Skates, S. J., Pearson, T. W., Paulovich, A. G., Carr, S. A.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 1.30 MB

english, 2012

3

Proteome Analyses of Hydrogen-producing Hyperthermophilic Archaeon Thermococcus onnurineus NA1 in Different One-carbon Substrate Culture Conditions

Moon, Y.-J., Kwon, J., Yun, S.-H., Lim, H. L., Kim, M.-S., Kang, S. G., Lee, J.-H., Choi, J.-S., Kim, S. I., Chung, Y.-H.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 1.11 MB

english, 2012

4

Alterations in Protein Regulators of Neurodevelopment in the Cerebrospinal Fluid of Infants with Posthemorrhagic Hydrocephalus of Prematurity

Morales, D. M., Townsend, R. R., Malone, J. P., Ewersmann, C. A., Macy, E. M., Inder, T. E., Limbrick, D. D.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 1.69 MB

english, 2012

5

LC-MS/MS Analysis of Differentially Expressed Glioblastoma Membrane Proteome Reveals Altered Calcium Signaling and Other Protein Groups of Regulatory Functions

Polisetty, R. V., Gautam, P., Sharma, R., Harsha, H. C., Nair, S. C., Gupta, M. K., Uppin, M. S., Challa, S., Puligopu, A. K., Ankathi, P., Purohit, A. K., Chandak, G. R., Pandey, A., Sirdeshmukh, R.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 1.64 MB

english, 2012

6

iTRAQ Labeling is Superior to mTRAQ for Quantitative Global Proteomics and Phosphoproteomics

Mertins, P., Udeshi, N. D., Clauser, K. R., Mani, D., Patel, J., Ong, S.-e., Jaffe, J. D., Carr, S. A.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 1.98 MB

english, 2012

7

Proteomic Analysis of Mitotic RNA Polymerase II Reveals Novel Interactors and Association With Proteins Dysfunctional in Disease

Moller, A., Xie, S. Q., Hosp, F., Lang, B., Phatnani, H. P., James, S., Ramirez, F., Collin, G. B., Naggert, J. K., Babu, M. M., Greenleaf, A. L., Selbach, M., Pombo, A.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 2.52 MB

english, 2012

8

TSLP Signaling Network Revealed by SILAC-Based Phosphoproteomics

Zhong, J., Kim, M.-S., Chaerkady, R., Wu, X., Huang, T.-C., Getnet, D., Mitchell, C. J., Palapetta, S. M., Sharma, J., O'Meally, R. N., Cole, R. N., Yoda, A., Moritz, A., Loriaux, M. M., Rush, J., Wei

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 3.13 MB

english, 2012

9

Comparative Large Scale Characterization of Plant versus Mammal Proteins Reveals Similar and Idiosyncratic N- -Acetylation Features

Bienvenut, W. V., Sumpton, D., Martinez, A., Lilla, S., Espagne, C., Meinnel, T., Giglione, C.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 1.63 MB

english, 2012

10

Development of a Novel Method for Analyzing Collagen O-glycosylations by Hydrazide Chemistry

Taga, Y., Kusubata, M., Ogawa-Goto, K., Hattori, S.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 1.69 MB

english, 2012

11

Integrated Proteomic, Transcriptomic, and Biological Network Analysis of Breast Carcinoma Reveals Molecular Features of Tumorigenesis and Clinical Relapse

Imielinski, M., Cha, S., Rejtar, T., Richardson, E. A., Karger, B. L., Sgroi, D. C.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 998 KB

english, 2012

12

A Profile of an Endosymbiont-enriched Fraction of the Coral Stylophora pistillata Reveals Proteins Relevant to Microbial-Host Interactions

Weston, A. J., Dunlap, W. C., Shick, J. M., Klueter, A., Iglic, K., Vukelic, A., Starcevic, A., Ward, M., Wells, M. L., Trick, C. G., Long, P. F.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 951 KB

english, 2012

13

Multi High-Throughput Approach for Highly Selective Identification of Vaccine Candidates: the Group A Streptococcus Case

Bensi, G., Mora, M., Tuscano, G., Biagini, M., Chiarot, E., Bombaci, M., Capo, S., Falugi, F., Manetti, A. G. O., Donato, P., Swennen, E., Gallotta, M., Garibaldi, M., Pinto, V., Chiappini, N., Musser

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 3.10 MB

english, 2012

14

msCompare: A Framework for Quantitative Analysis of Label-free LC-MS Data for Comparative Candidate Biomarker Studies

Hoekman, B., Breitling, R., Suits, F., Bischoff, R., Horvatovich, P.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 1.63 MB

english, 2012

15

Glycosylation of Human Milk Lactoferrin Exhibits Dynamic Changes During Early Lactation Enhancing Its Role in Pathogenic Bacteria-Host Interactions

Barboza, M., Pinzon, J., Wickramasinghe, S., Froehlich, J. W., Moeller, I., Smilowitz, J. T., Ruhaak, L. R., Huang, J., Lonnerdal, B., German, J. B., Medrano, J. F., Weimer, B. C., Lebrilla, C. B.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 1.19 MB

english, 2012

16

La Autoantigen Mediates Oxidant Induced De Novo Nrf2 Protein Translation

Zhang, J., Dinh, T. N., Kappeler, K., Tsaprailis, G., Chen, Q. M.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 2.56 MB

english, 2012

17

Sequential Multiplexed Analyte Quantification Using Peptide Immunoaffinity Enrichment Coupled to Mass Spectrometry

Whiteaker, J. R., Zhao, L., Lin, C., Yan, P., Wang, P., Paulovich, A. G.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 1.38 MB

english, 2012

18

Evaluation and Properties of the Budding Yeast Phosphoproteome

Amoutzias, G. D., He, Y., Lilley, K. S., Van de Peer, Y., Oliver, S. G.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 1.62 MB

english, 2012

19

Systems Kinomics Demonstrates Congo Basin Monkeypox Virus Infection Selectively Modulates Host Cell Signaling Responses as Compared to West African Monkeypox Virus

Kindrachuk, J., Arsenault, R., Kusalik, A., Kindrachuk, K. N., Trost, B., Napper, S., Jahrling, P. B., Blaney, J. E.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 1.44 MB

english, 2012

20

Cross-talk between Receptor Tyrosine Kinase and Tumor Necrosis Factor- Signaling Networks Regulates Apoptosis but not Proliferation

Beyer, E. M., MacBeath, G.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 3.93 MB

english, 2012

21

On Marathons and Sprints: An Integrated Quantitative Proteomics and Transcriptomics Analysis of Differences Between Slow and Fast Muscle Fibers

Drexler, H. C. A., Ruhs, A., Konzer, A., Mendler, L., Bruckskotten, M., Looso, M., Gunther, S., Boettger, T., Kruger, M., Braun, T.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 3.91 MB

english, 2012

22

CD90 is Identified as a Candidate Marker for Cancer Stem Cells in Primary High-Grade Gliomas Using Tissue Microarrays

He, J., Liu, Y., Zhu, T., Zhu, J., DiMeco, F., Vescovi, A. L., Heth, J. A., Muraszko, K. M., Fan, X., Lubman, D. M.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 2.55 MB

english, 2012

23

Identification of Candidate Biomarkers for Early Detection of Human Lung Squamous Cell Cancer by Quantitative Proteomics

Zeng, G.-Q., Zhang, P.-F., Deng, X., Yu, F.-L., Li, C., Xu, Y., Yi, H., Li, M.-Y., Hu, R., Zuo, J.-H., Li, X.-H., Wan, X.-X., Qu, J.-Q., He, Q.-Y., Li, J.-H., Ye, X., Chen, Y., Li, J.-Y., Xiao, Z.-Q.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 2.88 MB

english, 2012

24

Altered Expression of Sialylated Glycoproteins in Breast Cancer Using Hydrazide Chemistry and Mass Spectrometry

Tian, Y., Esteva, F. J., Song, J., Zhang, H.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 700 KB

english, 2012

25

Metabolomics of Human Cerebrospinal Fluid Identifies Signatures of Malignant Glioma

Locasale, J. W., Melman, T., Song, S., Yang, X., Swanson, K. D., Cantley, L. C., Wong, E. T., Asara, J. M.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 2.08 MB

english, 2012

26

Mapping Yeast N-Glycosites with Isotopically Recoded Glycans

Breidenbach, M. A., Palaniappan, K. K., Pitcher, A. A., Bertozzi, C. R.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 1011 KB

english, 2012

27

Systematic Identification of the HSP90 Regulated Proteome

Wu, Z., Moghaddas Gholami, A., Kuster, B.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 2.96 MB

english, 2012

28

Chitinase-like Proteins are Candidate Biomarkers for Sepsis-induced Acute Kidney Injury

Maddens, B., Ghesquiere, B., Vanholder, R., Demon, D., Vanmassenhove, J., Gevaert, K., Meyer, E.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 1.59 MB

english, 2012

29

Interaction Proteomics Identify NEURL4 and the HECT E3 Ligase HERC2 as Novel Modulators of Centrosome Architecture

Al-Hakim, A. K., Bashkurov, M., Gingras, A.-C., Durocher, D., Pelletier, L.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 2.10 MB

english, 2012

30

A Proteome Comparison Between Physiological Angiogenesis and Angiogenesis in Glioblastoma

Mustafa, D. A. M., Dekker, L. J., Stingl, C., Kremer, A., Stoop, M., Smitt, P. A. E. S., Kros, J. M., Luider, T. M.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 2.83 MB

english, 2012

31

Restricting Fermentative Potential by Proteome Remodeling: AN ADAPTIVE STRATEGY EVIDENCED IN BACILLUS CEREUS

Clair, G., Armengaud, J., Duport, C.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 2.53 MB

english, 2012

32

Pharmacoproteomic Study of Three Different Chondroitin Sulfate Compounds on Intracellular and Extracellular Human Chondrocyte Proteomes

Calamia, V., Fernandez-Puente, P., Mateos, J., Lourido, L., Rocha, B., Montell, E., Verges, J., Ruiz-Romero, C., Blanco, F. J.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 883 KB

english, 2012

33

Heterogenous Turnover of Sperm and Seminal Vesicle Proteins in the Mouse Revealed by Dynamic Metabolic Labeling

Claydon, A. J., Ramm, S. A., Pennington, A., Hurst, J. L., Stockley, P., Beynon, R.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 2.54 MB

english, 2012

34

Determining Degradation and Synthesis Rates of Arabidopsis Proteins Using the Kinetics of Progressive 15N Labeling of Two-dimensional Gel-separated Protein Spots

Li, L., Nelson, C. J., Solheim, C., Whelan, J., Millar, A. H.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 5.44 MB

english, 2012

35

Quantitative Analysis of the Chromatin Proteome in Disease Reveals Remodeling Principles and Identifies High Mobility Group Protein B2 as a Regulator of Hypertrophic Growth

Franklin, S., Chen, H., Mitchell-Jordan, S., Ren, S., Wang, Y., Vondriska, T. M.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 2.86 MB

english, 2012

36

Protein Interaction Profiling of the p97 Adaptor UBXD1 Points to a Role for the Complex in Modulating ERGIC-53 Trafficking

Haines, D. S., Lee, J. E., Beauparlant, S. L., Kyle, D. B., den Besten, W., Sweredoski, M. J., Graham, R. L. J., Hess, S., Deshaies, R. J.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 1.23 MB

english, 2012

37

Human Biomarker Discovery and Predictive Models for Disease Progression for Idiopathic Pneumonia Syndrome Following Allogeneic Stem Cell Transplantation

Schlatzer, D. M., Dazard, J.-E., Ewing, R. M., Ilchenko, S., Tomcheko, S. E., Eid, S., Ho, V., Yanik, G., Chance, M. R., Cooke, K. R.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 1.91 MB

english, 2012

38

Proteomic Analysis of Zebrafish Caudal Fin Regeneration

Saxena, S., Singh, S. K., Lakshmi, M. G. M., Meghah, V., Bhatti, B., Swamy, C. V. B., Sundaram, C. S., Idris, M. M.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 4.83 MB

english, 2012

39

Protein Identification Using Top-Down Spectra

Liu, X., Sirotkin, Y., Shen, Y., Anderson, G., Tsai, Y. S., Ting, Y. S., Goodlett, D. R., Smith, R. D., Bafna, V., Pevzner, P. A.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 2.11 MB

english, 2012

40

Rapid Identification of Monospecific Monoclonal Antibodies Using a Human Proteome Microarray

Jeong, J. S., Jiang, L., Albino, E., Marrero, J., Rho, H. S., Hu, J., Hu, S., Vera, C., Bayron-Poueymiroy, D., Rivera-Pacheco, Z. A., Ramos, L., Torres-Castro, C., Qian, J., Bonaventura, J., Boeke, J.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 2.17 MB

english, 2012

41

Global Stability of Plasma Proteomes for Mass Spectrometry-Based Analyses

Zimmerman, L. J., Li, M., Yarbrough, W. G., Slebos, R. J. C., Liebler, D. C.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 2.29 MB

english, 2012

42

The Proteomic Profile of Circulating Pentraxin 3 (PTX3) Complex in Sepsis Demonstrates the Interaction with Azurocidin 1 and Other Components of Neutrophil Extracellular Traps

Daigo, K., Yamaguchi, N., Kawamura, T., Matsubara, K., Jiang, S., Ohashi, R., Sudou, Y., Kodama, T., Naito, M., Inoue, K., Hamakubo, T.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 3.01 MB

english, 2012