Volume 14; Issue 3

Molecular & Cellular Proteomics

Volume 14; Issue 3

1

An Enhanced In Vivo Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) Model for Quantification of Drug Metabolism Enzymes

MacLeod, A. Kenneth, Fallon, Padraic G., Sharp, Sheila, Henderson, Colin J., Wolf, C. Roland, Huang, Jeffrey T.-J.

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 1.18 MB

english, 2015

2

Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation

Bassani-Sternberg, Michal, Pletscher-Frankild, Sune, Jensen, Lars Juhl, Mann, Matthias

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 6.62 MB

english, 2015

3

Proteomics-Based Metabolic Modeling Reveals That Fatty Acid Oxidation (FAO) Controls Endothelial Cell (EC) Permeability

Patella, Francesca, Schug, Zachary T., Persi, Erez, Neilson, Lisa J., Erami, Zahra, Avanzato, Daniele, Maione, Federica, Hernandez-Fernaud, Juan R., Mackay, Gillian, Zheng, Liang, Reid, Steven, Frezza

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 748 KB

english, 2015

4

Tyrosine Phosphorylation of the Lyn Src Homology 2 (SH2) Domain Modulates Its Binding Affinity and Specificity

Jin, Lily L., Wybenga-Groot, Leanne E., Tong, Jiefei, Taylor, Paul, Minden, Mark D., Trudel, Suzanne, McGlade, C. Jane, Moran, Michael F.

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 888 KB

english, 2015

5

The Proteome and Lipidome of Synechocystis sp. PCC 6803 Cells Grown under Light-Activated Heterotrophic Conditions

Plohnke, Nicole, Seidel, Tobias, Kahmann, Uwe, Rögner, Matthias, Schneider, Dirk, Rexroth, Sascha

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 1.25 MB

english, 2015

6

Systematic Characterization and Prediction of Post-Translational Modification Cross-Talk

Huang, Yuanhua, Xu, Bosen, Zhou, Xueya, Li, Ying, Lu, Ming, Jiang, Rui, Li, Tingting

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 2.42 MB

english, 2015

7

Monitoring Interactions and Dynamics of Endogenous Beta-catenin With Intracellular Nanobodies in Living Cells

Traenkle, Bjoern, Emele, Felix, Anton, Roman, Poetz, Oliver, Haeussler, Ragna S., Maier, Julia, Kaiser, Philipp D., Scholz, Armin M., Nueske, Stefan, Buchfellner, Andrea, Romer, Tina, Rothbauer, Ulric

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 1.93 MB

english, 2015

8

Post-translational Modifications Regulate Class IIa Histone Deacetylase (HDAC) Function in Health and Disease

Mathias, Rommel A., Guise, Amanda J., Cristea, Ileana M.

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

9

Proteomic Study of Microsomal Proteins Reveals a Key Role for Arabidopsis Annexin 1 in Mediating Heat Stress-Induced Increase in Intracellular Calcium Levels

Wang, Xu, Ma, Xiaolong, Wang, Hui, Li, Bingjie, Clark, Greg, Guo, Yi, Roux, Stan, Sun, Daye, Tang, Wenqiang

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 6.83 MB

english, 2015

10

KCMF1 (potassium channel modulatory factor 1) Links RAD6 to UBR4 (ubiquitin N-recognin domain-containing E3 ligase 4) and Lysosome-Mediated Degradation

Hong, Jenny H., Kaustov, Lilia, Coyaud, Etienne, Srikumar, Tharan, Wan, Janet, Arrowsmith, Cheryl, Raught, Brian

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 5.60 MB

english, 2015

11

Characterization of the Host Response to Pichinde Virus Infection in the Syrian Golden Hamster by Species-Specific Kinome Analysis

Falcinelli, Shane, Gowen, Brian B., Trost, Brett, Napper, Scott, Kusalik, Anthony, Johnson, Reed F., Safronetz, David, Prescott, Joseph, Wahl-Jensen, Victoria, Jahrling, Peter B., Kindrachuk, Jason

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 5.16 MB

english, 2015

12

Tissue Specific Dysregulated Protein Subnetworks in Type 2 Diabetic Bladder Urothelium and Detrusor Muscle

Tomechko, Sara E., Liu, Guiming, Tao, Mingfang, Schlatzer, Daniela, Powell, C. Thomas, Gupta, Sanjay, Chance, Mark R., Daneshgari, Firouz

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 1.11 MB

english, 2015

13

Integrating Phosphoproteome and Transcriptome Reveals New Determinants of Macrophage Multinucleation

Rotival, Maxime, Ko, Jeong-Hun, Srivastava, Prashant K., Kerloc'h, Audrey, Montoya, Alex, Mauro, Claudio, Faull, Peter, Cutillas, Pedro R., Petretto, Enrico, Behmoaras, Jacques

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 2.91 MB

english, 2015

14

Reproducible and Consistent Quantification of the Saccharomyces cerevisiae Proteome by SWATH-mass spectrometry

Selevsek, Nathalie, Chang, Ching-Yun, Gillet, Ludovic C., Navarro, Pedro, Bernhardt, Oliver M., Reiter, Lukas, Cheng, Lin-Yang, Vitek, Olga, Aebersold, Ruedi

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 1.36 MB

english, 2015

15

Quantitative Phosphoproteomics of the Ataxia Telangiectasia-Mutated (ATM) and Ataxia Telangiectasia-Mutated and Rad3-related (ATR) Dependent DNA Damage Response in Arabidopsis thaliana

Roitinger, Elisabeth, Hofer, Manuel, Köcher, Thomas, Pichler, Peter, Novatchkova, Maria, Yang, Jianhua, Schlögelhofer, Peter, Mechtler, Karl

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 1.70 MB

english, 2015

16

Proteomics Links the Redox State to Calcium Signaling During Bleaching of the Scleractinian Coral Acropora microphthalma on Exposure to High Solar Irradiance and Thermal Stress

Weston, Andrew J., Dunlap, Walter C., Beltran, Victor H., Starcevic, Antonio, Hranueli, Daslav, Ward, Malcolm, Long, Paul F.

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 296 KB

english, 2015

17

Cerebrospinal Fluid Peptides as Potential Parkinson Disease Biomarkers: A Staged Pipeline for Discovery and Validation

Shi, Min, Movius, James, Dator, Romel, Aro, Patrick, Zhao, Yanchun, Pan, Catherine, Lin, Xiangmin, Bammler, Theo K., Stewart, Tessandra, Zabetian, Cyrus P., Peskind, Elaine R., Hu, Shu-Ching, Quinn, J

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 869 KB

english, 2015

18

Global Analysis of Myocardial Peptides Containing Cysteines With Irreversible Sulfinic and Sulfonic Acid Post-Translational Modifications

Paulech, Jana, Liddy, Kiersten A., Engholm-Keller, Kasper, White, Melanie Y., Cordwell, Stuart J.

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 1.06 MB

english, 2015

19

Secretome Analysis of an Osteogenic Prostate Tumor Identifies Complex Signaling Networks Mediating Cross-talk of Cancer and Stromal Cells Within the Tumor Microenvironment

Lee, Yu-Chen, Gajdosik, Martina Srajer, Josic, Djuro, Clifton, James G., Logothetis, Christopher, Yu-Lee, Li-Yuan, Gallick, Gary E., Maity, Sankar N., Lin, Sue-Hwa

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 2.00 MB

english, 2015

20

New Host Factors Important for Respiratory Syncytial Virus (RSV) Replication Revealed by a Novel Microfluidics Screen for Interactors of Matrix (M) Protein

Kipper, Sarit, Hamad, Samar, Caly, Leon, Avrahami, Dorit, Bacharach, Eran, Jans, David A., Gerber, Doron, Bajorek, Monika

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 2.05 MB

english, 2015

21

Minireviews Revisited

Bradshaw, Ralph A., Burlingame, A. L.

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 240 KB

english, 2015

22

mzDB: A File Format Using Multiple Indexing Strategies for the Efficient Analysis of Large LC-MS/MS and SWATH-MS Data Sets

Bouyssié, David, Dubois, Marc, Nasso, Sara, Gonzalez de Peredo, Anne, Burlet-Schiltz, Odile, Aebersold, Ruedi, Monsarrat, Bernard

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 1.97 MB

english, 2015

23

RTS,S Vaccination Is Associated With Serologic Evidence of Decreased Exposure to Plasmodium falciparum Liver- and Blood-Stage Parasites

Campo, Joe J., Aponte, John J., Skinner, Jeff, Nakajima, Rie, Molina, Douglas M., Liang, Li, Sacarlal, Jahit, Alonso, Pedro L., Crompton, Peter D., Felgner, Philip L., Dobaño, Carlota

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 1.83 MB

english, 2015

24

Dodecyl Maltopyranoside Enabled Purification of Active Human GABA Type A Receptors for Deep and Direct Proteomic Sequencing

Zhang, Xi, Miller, Keith W.

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 1.39 MB

english, 2015

25

Semi-quantitative Measurement of a Specific Glycoform Using a DNA-tagged Antibody and Lectin Affinity Chromatography for Glyco-biomarker Development

Lee, Ju Hee, Cho, Chang Hee, Kim, Sun Hee, Kang, Jeong Gu, Yoo, Jong Shin, Chang, Chulhun Ludgerus, Ko, Jeong-Heon, Kim, Yong-Sam

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 2.25 MB

english, 2015

26

The Neddylation-Cullin 2-RBX1 E3 Ligase Axis Targets Tumor Suppressor RhoB for Degradation in Liver Cancer

Xu, Junfeng, Li, Lihui, Yu, Guangyang, Ying, Wantao, Gao, Qiang, Zhang, Wenjuan, Li, Xianyu, Ding, Chen, Jiang, Yanan, Wei, Dongping, Duan, Shengzhong, Lei, Qunying, Li, Peng, Shi, Tieliu, Qian, Xiaoh

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 2.10 MB

english, 2015

27

Antibody Profiling of Bipolar Disorder Using Escherichia coli Proteome Microarrays

Chen, Po-Chung, Syu, Guan-Da, Chung, Kuo-Hsuan, Ho, Yu-Hsuan, Chung, Feng-Hsiang, Chen, Pao-Huan, Lin, Jyun-Mu, Chen, Yi-Wen, Tsai, Shang-Ying, Chen, Chien-Sheng

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 2.16 MB

english, 2015

28

Identification of Caveolar Resident Proteins in Ventricular Myocytes Using a Quantitative Proteomic Approach: Dynamic Changes in Caveolar Composition Following Adrenoceptor Activation

Wypijewski, Krzysztof J., Tinti, Michele, Chen, Wenzhang, Lamont, Douglas, Ashford, Michael L. J., Calaghan, Sarah C., Fuller, William

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 2.34 MB

english, 2015

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