Volume 28; Issue 1

Molecular Biology and Evolution

Volume 28; Issue 1

1

Molecular Evolution and Network-Level Analysis of the N-Glycosylation Metabolic Pathway Across Primates

Montanucci, L., Laayouni, H., Dall'Olio, G. M., Bertranpetit, J.

Journal:

Molecular Biology and Evolution

Year:

2010

Language:

english

File:

PDF, 325 KB

english, 2010

2

Extended Y Chromosome Investigation Suggests Postglacial Migrations of Modern Humans into East Asia via the Northern Route

Zhong, H., Shi, H., Qi, X.-B., Duan, Z.-Y., Tan, P.-P., Jin, L., Su, B., Ma, R. Z.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 1.49 MB

english, 2011

3

Origins and Early Evolution of the Mevalonate Pathway of Isoprenoid Biosynthesis in the Three Domains of Life

Lombard, J., Moreira, D.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 1.87 MB

english, 2011

4

Phylogenomic Analysis of Kinetoplastids Supports That Trypanosomatids Arose from within Bodonids

Deschamps, P., Lara, E., Marande, W., Lopez-Garcia, P., Ekelund, F., Moreira, D.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 230 KB

english, 2011

5

Transcriptomic Evidence That Longevity of Acquired Plastids in the Photosynthetic Slugs Elysia timida and Plakobranchus ocellatus Does Not Entail Lateral Transfer of Algal Nuclear Genes

Wagele, H., Deusch, O., Handeler, K., Martin, R., Schmitt, V., Christa, G., Pinzger, B., Gould, S. B., Dagan, T., Klussmann-Kolb, A., Martin, W.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 1018 KB

english, 2011

6

Testing Founder Effect Speciation: Divergence Population Genetics of the Spoonbills Platalea regia and Pl. minor (Threskiornithidae, Aves)

Yeung, C. K. L., Tsai, P.-W., Chesser, R. T., Lin, R.-C., Yao, C.-T., Tian, X.-H., Li, S.-H.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 481 KB

english, 2011

7

Conservation and Evolution in and among SRF- and MEF2-Type MADS Domains and Their Binding Sites

Wu, W., Huang, X., Cheng, J., Li, Z., de Folter, S., Huang, Z., Jiang, X., Pang, H., Tao, S.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 642 KB

english, 2011

8

Recent Expansion of a New Ingi-Related Clade of Vingi non-LTR Retrotransposons in Hedgehogs

Kojima, K. K., Kapitonov, V. V., Jurka, J.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 219 KB

english, 2011

9

A High Incidence of Selection on Physiologically Important Genes in the Three-Spined Stickleback, Gasterosteus aculeatus

Shimada, Y., Shikano, T., Merila, J.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 1.16 MB

english, 2011

10

Disulfide Bond Acquisition through Eukaryotic Protein Evolution

Wong, J. W. H., Ho, S. Y. W., Hogg, P. J.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 593 KB

english, 2011

11

A Genomic Portrait of Human Microsatellite Variation

Payseur, B. A., Jing, P., Haasl, R. J.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 197 KB

english, 2011

12

Molecular Footprints of Local Adaptation in Two Mediterranean Conifers

Grivet, D., Sebastiani, F., Alia, R., Bataillon, T., Torre, S., Zabal-Aguirre, M., Vendramin, G. G., Gonzalez-Martinez, S. C.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 632 KB

english, 2011

13

Widespread Losses of Vomeronasal Signal Transduction in Bats

Zhao, H., Xu, D., Zhang, S., Zhang, J.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 1.78 MB

english, 2011

14

A Universal Molecular Clock of Protein Folds and Its Power in Tracing the Early History of Aerobic Metabolism and Planet Oxygenation

Wang, M., Jiang, Y.-Y., Kim, K. M., Qu, G., Ji, H.-F., Mittenthal, J. E., Zhang, H.-Y., Caetano-Anolles, G.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 710 KB

english, 2011

15

Adaptive Evolution of Four Microcephaly Genes and the Evolution of Brain Size in Anthropoid Primates

Montgomery, S. H., Capellini, I., Venditti, C., Barton, R. A., Mundy, N. I.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 348 KB

english, 2011

16

Complete Plastid Genome Sequences of Three Rosids (Castanea, Prunus, Theobroma): Evidence for At Least Two Independent Transfers of rpl22 to the Nucleus

Jansen, R. K., Saski, C., Lee, S.-B., Hansen, A. K., Daniell, H.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 7.00 MB

english, 2011

17

A New Test for Detecting Recent Positive Selection that is Free from the Confounding Impacts of Demography

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 405 KB

english, 2011

18

Origin of Clothing Lice Indicates Early Clothing Use by Anatomically Modern Humans in Africa

Toups, M. A., Kitchen, A., Light, J. E., Reed, D. L.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 236 KB

english, 2011

19

Evolutionary History of Arabidopsis thaliana Aminoacyl-tRNA Synthetase Dual-Targeted Proteins

Brandao, M. M., Silva-Filho, M. C.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 475 KB

english, 2011

20

Evolution of the Insect Yellow Gene Family

Ferguson, L. C., Green, J., Surridge, A., Jiggins, C. D.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 1.18 MB

english, 2011

21

Evaluating the Roles of Energetic Functional Constraints on Teleost Mitochondrial-Encoded Protein Evolution

Sun, Y.-B., Shen, Y.-Y., Irwin, D. M., Zhang, Y.-P.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 269 KB

english, 2011

22

Biased Gene Conversion Affects Patterns of Codon Usage and Amino Acid Usage in the Saccharomyces sensu stricto Group of Yeasts

Harrison, R. J., Charlesworth, B.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 562 KB

english, 2011

23

Evolution of Function of a Fused Metazoan tRNA Synthetase

Ray, P. S., Sullivan, J. C., Jia, J., Francis, J., Finnerty, J. R., Fox, P. L.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 1.10 MB

english, 2011

24

A Functional Tom70 in the Human Parasite Blastocystis sp.: Implications for the Evolution of the Mitochondrial Import Apparatus

Tsaousis, A. D., Gaston, D., Stechmann, A., Walker, P. B., Lithgow, T., Roger, A. J.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 634 KB

english, 2011

25

Insight into Evolution of Bordetella pertussis from Comparative Genomic Analysis: Evidence of Vaccine-Driven Selection

Octavia, S., Maharjan, R. P., Sintchenko, V., Stevenson, G., Reeves, P. R., Gilbert, G. L., Lan, R.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 211 KB

english, 2011

26

High Rate of Large-Scale Hemizygous Deletions in Asexually Propagating Daphnia: Implications for the Evolution of Sex

Xu, S., Omilian, A. R., Cristescu, M. E.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 221 KB

english, 2011

27

Patterns of Codon Usage Bias in Silene latifolia

Qiu, S., Bergero, R., Zeng, K., Charlesworth, D.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 195 KB

english, 2011

28

Whole-Genome Expression Plasticity across Tropical and Temperate Drosophila melanogaster Populations from Eastern Australia

Levine, M. T., Eckert, M. L., Begun, D. J.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

29

A Comprehensive Functional Analysis of Ancestral Human Signal Peptides

Gralle, M., Paabo, S.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 306 KB

english, 2011

30

Approximating Model Probabilities in Bayesian Information Criterion and Decision-Theoretic Approaches to Model Selection in Phylogenetics

Evans, J., Sullivan, J.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 198 KB

english, 2011

31

Lineage-Specific Variation in Intensity of Natural Selection in Mammals

Toll-Riera, M., Laurie, S., Alba, M. M.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 981 KB

english, 2011

32

Expansion of Hexose Transporter Genes Was Associated with the Evolution of Aerobic Fermentation in Yeasts

Lin, Z., Li, W.-H.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 1.11 MB

english, 2011

33

Characterizing the Native Codon Usages of a Genome: An Axis Projection Approach

Davis, J. J., Olsen, G. J.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 430 KB

english, 2011

34

Internal Diversification of Mitochondrial Haplogroup R0a Reveals Post-Last Glacial Maximum Demographic Expansions in South Arabia

Cerny, V., Mulligan, C. J., Fernandes, V., Silva, N. M., Alshamali, F., Non, A., Harich, N., Cherni, L., El Gaaied, A. B. A., Al-Meeri, A., Pereira, L.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 368 KB

english, 2011

35

Impact of Indels on the Flanking Regions in Structural Domains

Zhang, Z., Huang, J., Wang, Z., Wang, L., Gao, P.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 912 KB

english, 2011

36

Maintenance of Fungal Pathogen Species That Are Specialized to Different Hosts: Allopatric Divergence and Introgression through Secondary Contact

Gladieux, P., Vercken, E., Fontaine, M. C., Hood, M. E., Jonot, O., Couloux, A., Giraud, T.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 520 KB

english, 2011

37

Functional Compensation of Primary and Secondary Metabolites by Duplicate Genes in Arabidopsis thaliana

Hanada, K., Sawada, Y., Kuromori, T., Klausnitzer, R., Saito, K., Toyoda, T., Shinozaki, K., Li, W.-H., Hirai, M. Y.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 553 KB

english, 2011

38

Comparative Vertebrate Evolutionary Analyses of Type I Collagen: Potential of COL1a1 Gene Structure and Intron Variation for Common Bone-Related Diseases

Stover, D. A., Verrelli, B. C.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 232 KB

english, 2011

39

Elevated Evolutionary Rate in Genes with Homopolymeric Amino Acid Repeats Constituting Nondisordered Structure

Gojobori, J., Ueda, S.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 266 KB

english, 2011

40

A Likelihood Method for Detecting Trait-Dependent Shifts in the Rate of Molecular Evolution

Mayrose, I., Otto, S. P.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 468 KB

english, 2011

41

Phylogenetic Substitution Models for Detecting Heterotachy during Plastid Evolution

Whelan, S., Blackburne, B. P., Spencer, M.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 388 KB

english, 2011

42

GC3 of Genes Can Be Used as a Proxy for Isochore Base Composition: A Reply to Elhaik et al.

Clay, O. K., Bernardi, G.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 157 KB

english, 2011

43

Extreme Reconfiguration of Plastid Genomes in the Angiosperm Family Geraniaceae: Rearrangements, Repeats, and Codon Usage

Guisinger, M. M., Kuehl, J. V., Boore, J. L., Jansen, R. K.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 1.23 MB

english, 2011

44

Comparative Proteomics Uncovers the Signature of Natural Selection Acting on the Ejaculate Proteomes of Two Cricket Species Isolated by Postmating, Prezygotic Phenotypes

Marshall, J. L., Huestis, D. L., Garcia, C., Hiromasa, Y., Wheeler, S., Noh, S., Tomich, J. M., Howard, D. J.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 395 KB

english, 2011

45

Large-Scale mtDNA Screening Reveals a Surprising Matrilineal Complexity in East Asia and Its Implications to the Peopling of the Region

Kong, Q.-P., Sun, C., Wang, H.-W., Zhao, M., Wang, W.-Z., Zhong, L., Hao, X.-D., Pan, H., Wang, S.-Y., Cheng, Y.-T., Zhu, C.-L., Wu, S.-F., Liu, L.-N., Jin, J.-Q., Yao, Y.-G., Zhang, Y.-P.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 350 KB

english, 2011

46

Nuclear-Mitochondrial Sequences as Witnesses of Past Interbreeding and Population Diversity in the Jumping Bristletail Mesomachilis

Baldo, L., de Queiroz, A., Hedin, M., Hayashi, C. Y., Gatesy, J.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 1.02 MB

english, 2011

47

NUMTs in the Sponge Genome Reveal Conserved Transposition Mechanisms in Metazoans

Erpenbeck, D., Voigt, O., Adamski, M., Woodcroft, B. J., Hooper, J. N. A., Worheide, G., Degnan, B. M.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 284 KB

english, 2011

48

Endosymbiotic Gene Transfer and Transcriptional Regulation of Transferred Genes in Paulinella chromatophora

Nowack, E. C. M., Vogel, H., Groth, M., Grossman, A. R., Melkonian, M., Glockner, G.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 970 KB

english, 2011

49

Comparative Analysis of Metabolic Networks Provides Insight into the Evolution of Plant Pathogenic and Nonpathogenic Lifestyles in Pseudomonas

Mithani, A., Hein, J., Preston, G. M.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 914 KB

english, 2011

50

Generation-Biased Gene Expression in a Bryophyte Model System

Szovenyi, P., Rensing, S. A., Lang, D., Wray, G. A., Shaw, A. J.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 1.08 MB

english, 2011

51

Subscription page

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 47 KB

english, 2011

52

High Proportions of Deleterious Polymorphisms in Constrained Human Genes

Subramanian, S.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 152 KB

english, 2011

53

Evolution of the Nitric Oxide Synthase Family in Metazoans

Andreakis, N., D'Aniello, S., Albalat, R., Patti, F. P., Garcia-Fernandez, J., Procaccini, G., Sordino, P., Palumbo, A.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 1.31 MB

english, 2011

54

Molecular Evolution of the Endosperm Starch Synthesis Pathway Genes in Rice (Oryza sativa L.) and Its Wild Ancestor, O. rufipogon L.

Yu, G., Olsen, K. M., Schaal, B. A.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 390 KB

english, 2011

55

Estimation of the Neutrality Index

Stoletzki, N., Eyre-Walker, A.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 206 KB

english, 2011

56

MISFITS: Evaluating the Goodness of Fit between a Phylogenetic Model and an Alignment

Thi Nguyen, M. A., Klaere, S., von Haeseler, A.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 559 KB

english, 2011

57

Combining Comparative Sequence and Genomic Data to Ascertain Phylogenetic Relationships and Explore the Evolution of the Large GDSL-Lipase Family in Land Plants

Volokita, M., Rosilio-Brami, T., Rivkin, N., Zik, M.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 1.68 MB

english, 2011

58

A Phylogenetic Model for Investigating Correlated Evolution of Substitution Rates and Continuous Phenotypic Characters

Lartillot, N., Poujol, R.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 572 KB

english, 2011

59

SMBE Editors and Council

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 81 KB

english, 2011

60

Extreme Positive Selection on a New Highly-Expressed Larval Glycoprotein (LGP) Gene in Galaxias Fishes (Osmeriformes: Galaxiidae)

Wallis, L. J., Wallis, G. P.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 302 KB

english, 2011

61

Reconstructing Population Histories from Single Nucleotide Polymorphism Data

Siren, J., Marttinen, P., Corander, J.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 556 KB

english, 2011

62

Evolution of Structurally Disordered Proteins Promotes Neostructuralization

Siltberg-Liberles, J.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 394 KB

english, 2011

63

Out of America to Africa or Asia: Inference of Dispersal Histories Using Nuclear and Plastid DNA and the S-RNase Self-incompatibility Locus

Miller, J. S., Kamath, A., Damashek, J., Levin, R. A.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 394 KB

english, 2011

64

Molecular Evolution of Cytochrome c Oxidase Underlies High-Altitude Adaptation in the Bar-Headed Goose

Scott, G. R., Schulte, P. M., Egginton, S., Scott, A. L. M., Richards, J. G., Milsom, W. K.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 652 KB

english, 2011

65

MicroRNA Networks Alter to Conform to Transcription Factor Networks Adding Redundancy and Reducing the Repertoire of Target Genes for Coordinated Regulation

Iwama, H., Murao, K., Imachi, H., Ishida, T.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 235 KB

english, 2011

66

Chromosomal Inversions, Natural Selection and Adaptation in the Malaria Vector Anopheles funestus

Ayala, D., Fontaine, M. C., Cohuet, A., Fontenille, D., Vitalis, R., Simard, F.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 488 KB

english, 2011

67

Differential Evolution of Voltage-Gated Sodium Channels in Tetrapods and Teleost Fishes

Widmark, J., Sundstrom, G., Ocampo Daza, D., Larhammar, D.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 716 KB

english, 2011

68

Contrasting Evolutionary Patterns of the Rp1 Resistance Gene Family in Different Species of Poaceae

Luo, S., Peng, J., Li, K., Wang, M., Kuang, H.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 560 KB

english, 2011

69

Phylogenomics Reveals an Anomalous Distribution of USP Genes in Metazoans

Foret, S., Seneca, F., de Jong, D., Bieller, A., Hemmrich, G., Augustin, R., Hayward, D. C., Ball, E. E., Bosch, T. C. G., Agata, K., Hassel, M., Miller, D. J.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 1.61 MB

english, 2011

70

Nonrecombining Genes in a Recombination Environment: The Drosophila "Dot" Chromosome

Powell, J. R., Dion, K., Papaceit, M., Aguade, M., Vicario, S., Garrick, R. C.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 326 KB

english, 2011

71

Alternative Splicing and Gene Duplication in the Evolution of the FoxP Gene Subfamily

Santos, M. E., Athanasiadis, A., Leitao, A. B., DuPasquier, L., Sucena, E.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 851 KB

english, 2011

72

A Bayesian Approach for Fast and Accurate Gene Tree Reconstruction

Rasmussen, M. D., Kellis, M.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 768 KB

english, 2011

73

Choosing among Partition Models in Bayesian Phylogenetics

Fan, Y., Wu, R., Chen, M.-H., Kuo, L., Lewis, P. O.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 315 KB

english, 2011

74

Population Genetic Analysis of the Uncoupling Proteins Supports a Role for UCP3 in Human Cold Resistance

Hancock, A. M., Clark, V. J., Qian, Y., Di Rienzo, A.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 971 KB

english, 2011

75

Primate and Rodent Specific Intron Gains and the Origin of Retrogenes with Splice Variants

Szczesniak, M. W., Ciomborowska, J., Nowak, W., Rogozin, I. B., Makalowska, I.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 378 KB

english, 2011

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