Volume 11; Issue 1

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Molecular BioSystems
Volume 11; Issue 1

Molecular BioSystems

Volume 11; Issue 1

1

Evolution of the CRISPR-Cas adaptive immunity systems in prokaryotes: models and observations on virus–host coevolution

Koonin, Eugene V., Wolf, Yuri I.

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.91 MB

english, 2015

2

Affinity proteomics led identification of vimentin as a potential biomarker in colon cancers: insights from serological screening and computational modelling

Bukhari, Shoiab, Mokhdomi, Taseem A., Chikan, Naveed A., Amin, Asif, Qazi, Hilal, Wani, Sajad H., Wafai, Asrar H., Tyub, Sumira, Mustafa, Farhat, Mir, Masood S., Chowdri, Nisar A., Qadri, Raies A.

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.86 MB

english, 2015

3

Molecular dynamics-based discovery of novel phosphodiesterase-9A inhibitors with non-pyrazolopyrimidinone scaffolds

Li, Zhe, Lu, Xiao, Feng, Ling-Jun, Gu, Ying, Li, Xingshu, Wu, Yinuo, Luo, Hai-Bin

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.24 MB

english, 2015

4

In vitro selection of DNA-based aptamers that exhibit RNA-like conformations using a chimeric oligonucleotide library that contains two different xeno-nucleic acids

Hagiwara, Kenta, Fujita, Hiroto, Kasahara, Yuuya, Irisawa, Yuuta, Obika, Satoshi, Kuwahara, Masayasu

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.97 MB

english, 2015

5

Systems analysis reveals down-regulation of a network of pro-survival miRNAs drives the apoptotic response in dilated cardiomyopathy

Isserlin, Ruth, Merico, Daniele, Wang, Dingyan, Vuckovic, Dajana, Bousette, Nicolas, Gramolini, Anthony O., Bader, Gary D., Emili, Andrew

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.41 MB

english, 2015

6

Fatty acid biosynthesis revisited: structure elucidation and metabolic engineering

Beld, Joris, Lee, D. John, Burkart, Michael D.

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.00 MB

english, 2015

7

The yeast galactose network as a quantitative model for cellular memory

Stockwell, Sarah R., Landry, Christian R., Rifkin, Scott A.

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.96 MB

english, 2015

8

Alpha-synuclein oligomers and fibrils originate in two distinct conformer pools: a small angle X-ray scattering and ensemble optimisation modelling study

Curtain, Cyril C., Kirby, Nigel M., Mertens, Haydyn D. T., Barnham, Kevin J., Knott, Robert B., Masters, Colin L., Cappai, Roberto, Rekas, Agata, Kenche, Vijaya B., Ryan, Timothy

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.52 MB

english, 2015

9

Identification of miR-145 targets through an integrated omics analysis

Huang, Tai-Chung, Renuse, Santosh, Pinto, Sneha, Kumar, Praveen, Yang, Yi, Chaerkady, Raghothama, Godsey, Brian, Mendell, Joshua T., Halushka, Marc K., Civin, Curt I., Marchionni, Luigi, Pandey, Akhil

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.17 MB

english, 2015

10

Identification of cancer-related lncRNAs through integrating genome, regulome and transcriptome features

Zhao, Tingting, Xu, Jinyuan, Liu, Ling, Bai, Jing, Xu, Chaohan, Xiao, Yun, Li, Xia, Zhang, Liming

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.98 MB

english, 2015

11

Molecular insights of protein contour recognition with ligand pharmacophoric sites through combinatorial library design and MD simulation in validating HTLV-1 PR inhibitors

Selvaraj, Chandrabose, Omer, Ankur, Singh, Poonam, Singh, Sanjeev Kumar

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 4.37 MB

english, 2015

12

Decomposition of RNA methylome reveals co-methylation patterns induced by latent enzymatic regulators of the epitranscriptome

Liu, Lian, Zhang, Shao-Wu, Zhang, Yu-Chen, Liu, Hui, Zhang, Lin, Chen, Runsheng, Huang, Yufei, Meng, Jia

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.57 MB

english, 2015

13

Cyanobacteria as photosynthetic biocatalysts: a systems biology perspective

Gudmundsson, Steinn, Nogales, Juan

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.00 MB

english, 2015

14

Computational studies on the binding mechanism between triazolone inhibitors and Chk1 by molecular docking and molecular dynamics

Lv, Min, Ma, Shuying, Tian, Yueli, Zhang, Xiaoyun, Lv, Wenjuan, Zhai, Honglin

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 4.25 MB

english, 2015

15

Integrated analysis reveals that STAT3 is central to the crosstalk between HER/ErbB receptor signaling pathways in human mammary epithelial cells

Gong, Chunhong, Zhang, Yi, Shankaran, Harish, Resat, Haluk

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.97 MB

english, 2015

16

CIP2A regulates cancer metabolism and CREB phosphorylation in non-small cell lung cancer

Peng, Bo, Lei, Ningjing, Chai, Yurong, Chan, Edward K. L., Zhang, Jian-Ying

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.66 MB

english, 2015

17

Systems biosynthesis of secondary metabolic pathways within the oral human microbiome member Streptococcus mutans

Zvanych, Rostyslav, Lukenda, Nikola, Li, Xiang, Kim, Janice J., Tharmarajah, Satheeisha, Magarvey, Nathan A.

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.48 MB

english, 2015

18

Contents list

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.35 MB

english, 2015

19

Front cover

Journal:

Molecular BioSystems

Year:

2015

File:

PDF, 467 KB

2015

20

Molecular dynamics simulations of wild type and mutants of botulinum neurotoxin A complexed with synaptic vesicle protein 2C

Wang, Feng, Wan, Hua, Hu, Jian-ping, Chang, Shan

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.93 MB

english, 2015

21

MetDFBA: incorporating time-resolved metabolomics measurements into dynamic flux balance analysis

Willemsen, A. Marcel, Hendrickx, Diana M., Hoefsloot, Huub C. J., Hendriks, Margriet M. W. B., Wahl, S. Aljoscha, Teusink, Bas, Smilde, Age K., van Kampen, Antoine H. C.

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.03 MB

english, 2015

22

Protein submitochondrial localization from integrated sequence representation and SVM-based backward feature extraction

Li, Liqi, Yu, Sanjiu, Xiao, Weidong, Li, Yongsheng, Hu, Wenjuan, Huang, Lan, Zheng, Xiaoqi, Zhou, Shiwen, Yang, Hua

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.03 MB

english, 2015

23

Permethrin and its metabolites affect Cu/Zn superoxide conformation: fluorescence and in silico evidences

Rosita, Gabbianelli, Manuel, Carloni, Franco, Marmocchi, Cinzia, Nasuti, Donatella, Fedeli, Emiliano, Laudadio, Luca, Massaccesi, Roberta, Galeazzi

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.41 MB

english, 2015

24

Heparin makes differences: a molecular dynamics simulation study on the human βII-tryptase monomer

Wang, Yan, Zheng, Qing-Chuan, Kong, Chui-Peng, Tian, Ye, Zhan, Jiuyu, Zhang, Ji-Long, Zhang, Hong-Xing

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.90 MB

english, 2015

25

PLS/OPLS models in metabolomics: the impact of permutation of dataset rows on the K-fold cross-validation quality parameters

Triba, Mohamed N., Le Moyec, Laurence, Amathieu, Roland, Goossens, Corentine, Bouchemal, Nadia, Nahon, Pierre, Rutledge, Douglas N., Savarin, Philippe

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 4.20 MB

english, 2015

26

QM/MM MD simulations of La( iii )–phosphopeptide complexes

Messner, Christoph B., Bonn, Günther K., Hofer, Thomas S.

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.43 MB

english, 2015

27

Acclimatisation-induced stress influenced host metabolic and gut microbial composition change

Yap, Ivan K. S., Kho, Mee Teck, Lim, Swee Hua Erin, Ismail, Nor Hadiani, Yam, Wai Keat, Chong, Chun Wie

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.82 MB

english, 2015

28

Correction: Rapidly improved determination of metabolites from biological data sets using the high-efficient TransOmics tool

Zhang, Aihua, Zhou, Xiaohang, Zhao, Hongwei, Guan, Yu, Zou, Shiyu, Yan, Guang-li, Ma, Chung Wah, Liu, Qi, Wang, Xijun

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.27 MB

english, 2015

29

Inside front cover

Journal:

Molecular BioSystems

Year:

2015

File:

PDF, 275 KB

2015

30

Avoiding pitfalls in L 1 -regularised inference of gene networks

Tjärnberg, Andreas, Nordling, Torbjörn E. M., Studham, Matthew, Nelander, Sven, Sonnhammer, Erik L. L.

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.11 MB

english, 2015

31

Network motif frequency vectors reveal evolving metabolic network organisation

Pearcy, Nicole, Crofts, Jonathan J., Chuzhanova, Nadia

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.82 MB

english, 2015

32

Configurational changes of heme followed by cytochrome c folding reaction

Choi, Jungkweon, Cho, Dae Won, Tojo, Sachiko, Fujitsuka, Mamoru, Majima, Tetsuro

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.88 MB

english, 2015

33

Back cover

Journal:

Molecular BioSystems

Year:

2015

File:

PDF, 751 KB

2015

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