Volume 11; Issue 2

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Molecular BioSystems
Volume 11; Issue 2

Molecular BioSystems

Volume 11; Issue 2

1

Temporal-logic analysis of microglial phenotypic conversion with exposure to amyloid-β

Anastasio, Thomas J.

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.51 MB

english, 2015

2

Toxicity assessment of Arisaematis Rhizoma in rats by a 1 H NMR-based metabolomics approach

Dong, Ge, Wang, Junsong, Guo, Pingping, Wei, Dandan, Yang, Minghua, Kong, Lingyi

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.79 MB

english, 2015

3

A high-throughput metabolomic approach to explore the regulatory effect of mangiferin on metabolic network disturbances of hyperlipidemia rats

Zhou, Chengyan, Li, Gang, Li, Yanchuan, Gong, Liya, Huang, Yifan, Shi, Zhiping, Du, Shanshan, Li, Ying, Wang, Maoqing, Yin, Jun, Sun, Changhao

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.49 MB

english, 2015

4

A novel feature extraction scheme for prediction of protein–protein interaction sites

Du, Xiuquan, Jing, Anqi, Hu, Xinying

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.99 MB

english, 2015

5

Design of dual inhibitors of ROCK-I and NOX2 as potential leads for the treatment of neuroinflammation associated with various neurological diseases including autism spectrum disorder

Alokam, Reshma, Singhal, Sarthak, Srivathsav, Geetha Sai, Garigipati, Sowmya, Puppala, Sripriya, Sriram, Dharmarajan, Perumal, Yogeeswari

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.40 MB

english, 2015

6

An in-depth view of human serum albumin corona on gold nanoparticles

Ramezani, Fatemeh, Rafii-Tabar, Hashem

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 4.28 MB

english, 2015

7

Studies of N 9 -arenthenyl purines as novel DFG-in and DFG-out dual Src/Abl inhibitors using 3D-QSAR, docking and molecular dynamics simulations

Ma, Shaojie, Zeng, Guohua, Fang, Danqing, Wang, Juping, Wu, Wenjuan, Xie, Wenguo, Tan, Shepei, Zheng, Kangcheng

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 4.74 MB

english, 2015

8

A global view of network of lncRNAs and their binding proteins

Shang, Desi, Yang, Haixiu, Xu, Yanjun, Yao, Qianlan, Zhou, Wenbin, Shi, Xinrui, Han, Junwei, Su, Fei, Su, Bin, Zhang, Chunlong, Li, Chunquan, Li, Xia

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.48 MB

english, 2015

9

A metabolomic and pharmacokinetic study on the mechanism underlying the lipid-lowering effect of orally administered berberine

Gu, Shenghua, Cao, Bei, Sun, Runbin, Tang, Yueqing, Paletta, Janice L., Wu, Xiao-Lei, Liu, Linsheng, Zha, Weibin, Zhao, Chunyan, Li, Yan, Radlon, Jason M., Hylemon, Phillip B., Zhou, Huiping, Aa, Jiye

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.15 MB

english, 2015

10

Computational characterization of parallel dimeric and trimeric coiled-coils using effective amino acid indices

Li, Chen, Wang, Xiao-Feng, Chen, Zhen, Zhang, Ziding, Song, Jiangning

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 5.98 MB

english, 2015

11

Enzymatic strategies and biocatalysts for amide bond formation: tricks of the trade outside of the ribosome

Goswami, Anwesha, Van Lanen, Steven G.

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.80 MB

english, 2015

12

UHPLC-LTQ-Orbitrap MS combined with spike-in method for plasma metabonomics analysis of acute myocardial ischemia rats and pretreatment effect of Danqi Tongmai tablet

Yan, Bingpeng, Deng, Yanping, Hou, Jinjun, Bi, Qirui, Yang, Min, Jiang, Baohong, Liu, Xuan, Wu, Wanying, Guo, Dean

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.30 MB

english, 2015

13

Length-dependent translation initiation benefits the functional proteome of human cells

Guo, Jieming, Lian, Xinlei, Zhong, Jiayong, Wang, Tong, Zhang, Gong

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.36 MB

english, 2015

14

The plasma metabolic profiling of chronic acephate exposure in rats via an ultra-performance liquid chromatography-mass spectrometry based metabonomic method

Hou, Yurong, Cao, Can, Bao, Wei, Yang, Shuang, Shi, Haidan, Hao, Dongfang, Zhao, Xiujuan, Wu, Yonghui

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.14 MB

english, 2015

15

Prediction of advanced ovarian cancer recurrence by plasma metabolic profiling

Zhang, Haiyu, Ge, Tingting, Cui, Xiaoming, Hou, Yan, Ke, Chaofu, Yang, Meng, Yang, Kai, Wang, Jingtao, Guo, Bing, Zhang, Fan, Lou, Ge, Li, Kang

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.74 MB

english, 2015

16

Low complexity and disordered regions of proteins have different structural and amino acid preferences

Kumari, Bandana, Kumar, Ravindra, Kumar, Manish

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.07 MB

english, 2015

17

The regulation of microRNA expression by DNA methylation in hepatocellular carcinoma

He, Xing-Xing, Kuang, Shu-Zhen, Liao, Jia-Zhi, Xu, Chuan-Rui, Chang, Ying, Wu, Yu-Liang, Gong, Jing, Tian, De-An, Guo, An-Yuan, Lin, Ju-Sheng

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.12 MB

english, 2015

18

Chemometric design to explore pharmacophore features of BACE inhibitors for controlling Alzheimer's disease

Hossain, Tabassum, Mukherjee, Arup, Saha, Achintya

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.77 MB

english, 2015

19

Insights into the binding modes of CC chemokine receptor 4 (CCR4) inhibitors: a combined approach involving homology modelling, docking, and molecular dynamics simulation studies

Gadhe, Changdev G., Kim, Mi-hyun

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 5.10 MB

english, 2015

20

Investigating correlations in the altered metabolic profiles of obese and diabetic subjects in a South Indian Asian population using an NMR-based metabolomic approach

Gogna, Navdeep, Krishna, Murahari, Oommen, Anup Mammen, Dorai, Kavita

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.98 MB

english, 2015

21

Multi-spectroscopic and molecular modelling studies on the interaction of esculetin with calf thymus DNA

Sarwar, Tarique, Husain, Mohammed Amir, Rehman, Sayeed Ur, Ishqi, Hassan Mubarak, Tabish, Mohammad

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.02 MB

english, 2015

22

A metabolomics study of the inhibitory effect of 17-beta-estradiol on osteoclast proliferation and differentiation

Liu, Xiaoyan, Liu, Yanqiu, Cheng, Mengchun, Zhang, Xiaozhe, Xiao, Hongbin

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.17 MB

english, 2015

23

Construction of a lncRNA–PCG bipartite network and identification of cancer-related lncRNAs: a case study in prostate cancer

Liu, Yongjing, Zhang, Rui, Qiu, Fujun, Li, Kening, Zhou, Yuanshuai, Shang, Desi, Xu, Yan

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.14 MB

english, 2015

24

Effects of the A117V mutation on the folding and aggregation of palindromic sequences (PrP113–120) in prion: insights from replica exchange molecular dynamics simulations

Ning, Lulu, Wang, Qianqian, Zheng, Yang, Liu, Huanxiang, Yao, Xiaojun

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.51 MB

english, 2015

25

Predicting the subcellular localization of mycobacterial proteins by incorporating the optimal tripeptides into the general form of pseudo amino acid composition

Zhu, Pan-Pan, Li, Wen-Chao, Zhong, Zhe-Jin, Deng, En-Ze, Ding, Hui, Chen, Wei, Lin, Hao

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.49 MB

english, 2015

26

Correction: A metabolomic and pharmacokinetic study on the mechanism underlying the lipid-lowering effect of orally administered berberine

Gu, Shenghua, Cao, Bei, Sun, Runbin, Tang, Yueqing, Paletta, Janice L., Wu, Xiao-Lei, Liu, Linsheng, Zha, Weibin, Zhao, Chunyan, Li, Yan, Ridlon, Jason M., Hylemon, Phillip B., Zhou, Huiping, Aa, Jiye

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.27 MB

english, 2015

27

High-throughput synthesis of stable isotope-labeled transmembrane proteins for targeted transmembrane proteomics using a wheat germ cell-free protein synthesis system

Takemori, Nobuaki, Takemori, Ayako, Matsuoka, Kazuhiro, Morishita, Ryo, Matsushita, Natsuki, Aoshima, Masato, Takeda, Hiroyuki, Sawasaki, Tatsuya, Endo, Yaeta, Higashiyama, Shigeki

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.25 MB

english, 2015

28

A proteomic study of Shengmai injection's mechanism on preventing cardiac ischemia-reperfusion injury via energy metabolism modulation

Zhan, Shuyu, Fan, Xiaohui, Zhang, Feng, Wang, Yi, Kang, Liyuan, Li, Zheng

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.69 MB

english, 2015

29

Modeling the mitotic regulatory network identifies highly efficient anti-cancer drug combinations

Wu, Yiran, Zhuo, Xiaolong, Dai, Ziwei, Guo, Xiao, Wang, Yao, Zhang, Chuanmao, Lai, Luhua

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.37 MB

english, 2015

30

Front cover

Journal:

Molecular BioSystems

Year:

2015

File:

PDF, 291 KB

2015

31

Changes in the cardiac metabolome caused by perhexiline treatment in a mouse model of hypertrophic cardiomyopathy

Gehmlich, Katja, Dodd, Michael S., William Allwood, J., Kelly, Matthew, Bellahcene, Mohamed, Lad, Heena V., Stockenhuber, Alexander, Hooper, Charlotte, Ashrafian, Houman, Redwood, Charles S., Carrier,

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.58 MB

english, 2015

32

On the necessity and biological significance of threshold-free regulon prediction outputs

Rigali, Sébastien, Nivelle, Renaud, Tocquin, Pierre

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.03 MB

english, 2015

33

A pre-structured helix in the intrinsically disordered 4EBP1

Kim, Do-Hyoung, Lee, Chewook, Cho, Ye-Jin, Lee, Si-Hyung, Cha, Eun-Ji, Lim, Ji-Eun, Sabo, T. Michael, Griesinger, Christian, Lee, Donghan, Han, Kyou-Hoon

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.60 MB

english, 2015

34

Inside front cover

Journal:

Molecular BioSystems

Year:

2015

File:

PDF, 392 KB

2015

35

Contents list

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 4.22 MB

english, 2015

36

Back cover

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.03 MB

english, 2015

37

Efficient Bayesian estimates for discrimination among topologically different systems biology models

Hagen, David R., Tidor, Bruce

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.31 MB

english, 2015