Volume 11; Issue 3

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Molecular BioSystems
Volume 11; Issue 3

Molecular BioSystems

Volume 11; Issue 3

1

Molecular modelling studies of sirtuin 2 inhibitors using three-dimensional structure–activity relationship analysis and molecular dynamics simulations

Chuang, Yu-Chung, Chang, Ching-Hsun, Lin, Jen-Tai, Yang, Chia-Ning

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.73 MB

english, 2015

2

Classification of lung cancer using ensemble-based feature selection and machine learning methods

Cai, Zhihua, Xu, Dong, Zhang, Qing, Zhang, Jiexia, Ngai, Sai-Ming, Shao, Jianlin

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.10 MB

english, 2015

3

Prioritizing candidate disease-related long non-coding RNAs by walking on the heterogeneous lncRNA and disease network

Zhou, Meng, Wang, Xiaojun, Li, Jiawei, Hao, Dapeng, Wang, Zhenzhen, Shi, Hongbo, Han, Lu, Zhou, Hui, Sun, Jie

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.53 MB

english, 2015

4

Cysteine-mediated redox signalling in the mitochondria

Bak, D. W., Weerapana, E.

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.77 MB

english, 2015

5

PredHydroxy: computational prediction of protein hydroxylation site locations based on the primary structure

Shi, Shao-Ping, Chen, Xiang, Xu, Hao-Dong, Qiu, Jian-Ding

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.43 MB

english, 2015

6

Identification and molecular structure analysis of a new noncoding RNA, a sbRNA homolog, in the silkworm Bombyx mori genome

Duarte Junior, Francisco Ferreira, Lima Neto, Quirino Alves de, Rando, Fabiana dos Santos, Freitas, Douglas Vinícius Bassalobre de, Pattaro Júnior, José Renato, Polizelli, Lorena Gomes, Munhoz, Roxell

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.72 MB

english, 2015

7

Structural and dynamic basis of acid amido synthetase GH3.1: an investigation of substrate selectivity and major active site access channels

Wang, Xue, Du, Juan, Yao, Xiaojun

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.30 MB

english, 2015

8

Serum metabolomics analysis reveals impaired lipid metabolism in rats after oral exposure to benzo(a)pyrene

Wang, Xiaoxue, Zhang, Jie, Huang, Qingyu, Alamdar, Ambreen, Tian, Meiping, Liu, Liangpo, Shen, Heqing

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.78 MB

english, 2015

9

CN: a consensus algorithm for inferring gene regulatory networks using the SORDER algorithm and conditional mutual information test

Aghdam, Rosa, Ganjali, Mojtaba, Zhang, Xiujun, Eslahchi, Changiz

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.76 MB

english, 2015

10

Construction and analysis of a protein–protein interaction network related to self-renewal of mouse spermatogonial stem cells

Xie, Wenhai, Sun, Jin, Wu, Ji

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.28 MB

english, 2015

11

Quantitative proteomic analysis reveals heat stress-induced injury in rat small intestine via activation of the MAPK and NF-κB signaling pathways

He, Shasha, Hou, Xiaolin, Xu, Xiaolong, Wan, Changrong, Yin, Peng, Liu, Xiaoxi, Chen, Yuping, Shu, Banchao, Liu, Fenghua, Xu, Jianqin

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.38 MB

english, 2015

12

The toxicity of acute exposure to T-2 toxin evaluated by the metabonomics technique

Wan, Qianfen, Wu, Guangyao, He, Qinghua, Tang, Huiru, Wang, Yulan

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.77 MB

english, 2015

13

Molecular dynamics simulations and statistical coupling analysis of GPI12 in L. major: functional co-evolution and conservedness reveals potential drug–target sites

Singh, Shailza, Mandlik, Vineetha, Shinde, Sonali

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.93 MB

english, 2015

14

The crystal structure of the versatile cytochrome P450 enzyme CYP109B1 from Bacillus subtilis

Zhang, Aili, Zhang, Ting, Hall, Emma A., Hutchinson, Sean, Cryle, Max J., Wong, Luet-Lok, Zhou, Weihong, Bell, Stephen G.

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 4.22 MB

english, 2015

15

lncRNA-MFDL: identification of human long non-coding RNAs by fusing multiple features and using deep learning

Fan, Xiao-Nan, Zhang, Shao-Wu

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.36 MB

english, 2015

16

Applications of mass spectrometry for cellular lipid analysis

Wang, Chunyan, Wang, Miao, Han, Xianlin

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.82 MB

english, 2015

17

Discrimination of membrane transporter protein types using K-nearest neighbor method derived from the similarity distance of total diversity measure

Zuo, Yong-Chun, Su, Wen-Xia, Zhang, Shi-Hua, Wang, Shan-Shan, Wu, Cheng-Yan, Yang, Lei, Li, Guang-Peng

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.81 MB

english, 2015

18

Analysis of the hierarchical structure of the B. subtilis transcriptional regulatory network

Kumar, Santhust, Vendruscolo, Michele, Singh, Amit, Kumar, Dhiraj, Samal, Areejit

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.30 MB

english, 2015

19

Metabolomic analysis reveals functional overlapping of three signal transduction proteins in regulating ethanol tolerance in cyanobacterium Synechocystis sp. PCC 6803

Zhu, Ye, Pei, Guangsheng, Niu, Xiangfeng, Shi, Mengliang, Zhang, Mingyang, Chen, Lei, Zhang, Weiwen

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.09 MB

english, 2015

20

PGluS: prediction of protein S-glutathionylation sites with multiple features and analysis

Zhao, Xiaowei, Ning, Qiao, Ai, Meiyu, Chai, Haiting, Yin, Minghao

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.94 MB

english, 2015

21

Dissection of metabolic pathways in the Db/Db mouse model by integrative proteome and acetylome analysis

Hölper, Soraya, Nolte, Hendrik, Bober, Eva, Braun, Thomas, Krüger, Marcus

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.28 MB

english, 2015

22

4-Hydroxytamoxifen probes for light-dependent spatiotemporal control of Cre-ER mediated reporter gene expression

Faal, Tannaz, Wong, Pamela T., Tang, Shengzhuang, Coulter, Alexa, Chen, Yumay, Tu, Christina H., Baker, James R., Choi, Seok Ki, Inlay, Matthew A.

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.52 MB

english, 2015

23

Compound signature detection on LINCS L1000 big data

Liu, Chenglin, Su, Jing, Yang, Fei, Wei, Kun, Ma, Jinwen, Zhou, Xiaobo

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.50 MB

english, 2015

24

Curcumin inhibits proliferation–migration of NSCLC by steering crosstalk between a Wnt signaling pathway and an adherens junction via EGR-1

Chen, Qing-yong, Jiao, De-min, Wang, Li-feng, Wang, Lishan, Hu, Hui-zhen, Song, Jia, Yan, Jie, Wu, Li-jun, Shi, Jian-guo

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.80 MB

english, 2015

25

A transcriptomic analysis for identifying the unintended effects of introducing a heterologous glyphosate-tolerant EPSP synthase into Escherichia coli

Li, Liang, Zhou, Zhengfu, Jin, Wujun, Wan, Yusong, Lu, Wei

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.44 MB

english, 2015

26

Human 3-hydroxyanthranilate 3,4-dioxygenase (3HAO) dynamics and reaction, a multilevel computational study

Brkić, H., Kovačević, B., Tomić, S.

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.00 MB

english, 2015

27

Abnormal levels of heterogeneous nuclear ribonucleoprotein A2B1 (hnRNPA2B1) in tumour tissue and blood samples from patients diagnosed with lung cancer

Dowling, Paul, Pollard, Damian, Larkin, AnneMarie, Henry, Michael, Meleady, Paula, Gately, Kathy, O'Byrne, Kenneth, Barr, Martin P., Lynch, Vincent, Ballot, Jo, Crown, John, Moriarty, Michael, O'Brien

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.98 MB

english, 2015

28

Widening functional boundaries of the σ 54 promoter Pu of Pseudomonas putida by defeating extant physiological constraints

de las Heras, Aitor, Martínez-García, Esteban, Domingo-Sananes, Maria Rosa, de Lorenzo, Víctor

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.87 MB

english, 2015

29

Front cover

Journal:

Molecular BioSystems

Year:

2015

File:

PDF, 317 KB

2015

30

Inside front cover

Journal:

Molecular BioSystems

Year:

2015

File:

PDF, 337 KB

2015

31

Contents list

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 3.80 MB

english, 2015

32

Back cover

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.15 MB

english, 2015

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