Volume 8; Issue 10

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Molecular BioSystems
Volume 8; Issue 10

Molecular BioSystems

Volume 8; Issue 10

1

Proteomic study explores AGR2 as pro-metastatic protein in HCC

Yu, Hongxiu, Zhao, Jian, Lin, Ling, Zhang, Yang, Zhong, Fan, Liu, Yinkun, Yu, Yanyan, Shen, Huali, Han, Meimei, He, Fuchu, Yang, Pengyuan

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.49 MB

english, 2012

2

Robust co-regulation of tyrosine phosphorylation sites on proteins reveals novel protein interactions

Naegle, Kristen M., White, Forest M., Lauffenburger, Douglas A., Yaffe, Michael B.

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.76 MB

english, 2012

3

Metabolome 2.0: quantitative genetics and network biology of metabolic phenotypes

Dumas, Marc-Emmanuel

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.75 MB

english, 2012

4

Metabolomic analysis of polar metabolites in lipoprotein fractions identifies lipoprotein-specific metabolic profiles and their association with insulin resistance

Hyötyläinen, Tuulia, Mattila, Ismo, Wiedmer, Susanne K., Koivuniemi, Artturi, Taskinen, Marja-Riitta, Yki-Järvinen, Hannele, Orešič, Matej

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.05 MB

english, 2012

5

Intramolecular three-colour single pair FRET of intrinsically disordered proteins with increased dynamic range

Milles, Sigrid, Koehler, Christine, Gambin, Yann, Deniz, Ashok A., Lemke, Edward A.

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.46 MB

english, 2012

6

Metabolic regulation analysis of wild-type and arcA mutant Escherichia coli under nitrate conditions using different levels of omics data

Toya, Yoshihiro, Nakahigashi, Kenji, Tomita, Masaru, Shimizu, Kazuyuki

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.39 MB

english, 2012

7

Chemoselective hydroxyl group transformation: an elusive target

Trader, Darci J., Carlson, Erin E.

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.39 MB

english, 2012

8

Differential RNAi screening provides insights into the rewiring of signalling networks during oxidative stress

Garcia, Mar Arias, Alvarez, Miguel Sanchez, Sailem, Heba, Bousgouni, Vicky, Sero, Julia, Bakal, Chris

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.81 MB

english, 2012

9

Interaction of water with the G-quadruplex loop contributes to the binding energy of G-quadruplex to protein

Nagatoishi, Satoru, Sugimoto, Naoki

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.49 MB

english, 2012

10

The application of tetrahydroisoquinoline-3-carbonyl-TARGD(F)F as an anti-thrombotic agent having dual mechanisms of action

Yang, Guodong, Zhu, Haimei, Zhao, Ming, Wu, Jianhui, Wang, Yuji, Wang, Yanju, Zheng, Meiqing, Chen, Min, Liu, Jiawang, Peng, Shiqi

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.83 MB

english, 2012

11

Combining redox-proteomics and epigenomics to explain the involvement of oxidative stress in psychiatric disorders

Andreazza, Ana Cristina

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.23 MB

english, 2012

12

A compendium of inborn errors of metabolism mapped onto the human metabolic network

Sahoo, Swagatika, Franzson, Leifur, Jonsson, Jon J., Thiele, Ines

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.44 MB

english, 2012

13

Cell-penetrating nitroxides as molecular sensors for imaging of cancer in vivo, based on tissue redox activity

Zhelev, Zhivko, Gadjeva, Veselina, Aoki, Ichio, Bakalova, Rumiana, Saga, Tsuneo

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.67 MB

english, 2012

14

Engineering ecosystems and synthetic ecologies

Mee, Michael T., Wang, Harris H.

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 4.24 MB

english, 2012

15

Improved proteomic analysis pipeline for LC-ETD-MS/MS using charge enhancing methods

Xie, Li-Qi, Shen, Cheng-Pin, Liu, Min-Bo, Chen, Zhong-Da, Du, Ru-Yun, Yan, Guo-Quan, Lu, Hao-Jie, Yang, Peng-Yuan

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.80 MB

english, 2012

16

Towards high throughput metabolic flux analysis in plants

Huege, Jan, Poskar, C. Hart, Franke, Mathias, Junker, Björn H.

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.31 MB

english, 2012

17

The Core Diseasome

Janjić, Vuk, Pržulj, Nataša

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 3.43 MB

english, 2012

18

Leveraging kinase inhibitors to develop small molecule tools for imaging kinases by fluorescence microscopy

Zhang, Zijuan, Kwiatkowski, Nicholas, Zeng, Hong, Lim, Sang Min, Gray, Nathanael S., Zhang, Wei, Yang, Priscilla L.

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.31 MB

english, 2012

19

Label-free quantitative proteomic analysis reveals dysfunction of complement pathway in peripheral blood of schizophrenia patients: evidence for the immune hypothesis of schizophrenia

Li, Yang, Zhou, Kejun, Zhang, Zhao, Sun, Liya, Yang, Jinglei, Zhang, Ming, Ji, Baohu, Tang, Kefu, Wei, Zhiyun, He, Guang, Gao, Linghan, Yang, Lun, Wang, Peng, Yang, Ping, Feng, Guoying, He, Lin, Wan,

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.64 MB

english, 2012

20

LASSO modeling of the Arabidopsis thaliana seed/seedling transcriptome: a model case for detection of novel mucilage and pectin metabolism genes

Vasilevski, Aleksandar, Giorgi, Federico M., Bertinetti, Luca, Usadel, Björn

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 3.88 MB

english, 2012

21

Identifying functional links between genes by evolutionary transcriptomics

Silver, David H., Levin, Michal, Yanai, Itai

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.73 MB

english, 2012

22

Robustness analysis of cellular systems using the genetic tug-of-war method

Moriya, Hisao, Makanae, Koji, Watanabe, Kenji, Chino, Ayako, Shimizu-Yoshida, Yuki

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.67 MB

english, 2012

23

RWRMDA: predicting novel human microRNA–disease associations

Chen, Xing, Liu, Ming-Xi, Yan, Gui-Ying

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.69 MB

english, 2012

24

Analysis of bypass signaling in EGFR pathway and profiling of bypass genes for predicting response to anticancer EGFR tyrosine kinase inhibitors

Zhang, Jingxian, Jia, Jia, Zhu, Feng, Ma, Xiaohua, Han, Bucong, Wei, Xiaona, Tan, Chunyan, Jiang, Yuyang, Chen, Yuzong

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.05 MB

english, 2012

25

Back cover

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.33 MB

english, 2012

26

Differential Tus–Ter binding and lock formation: implications for DNA replication termination in Escherichia coli

Moreau, Morgane J. J., Schaeffer, Patrick M.

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.99 MB

english, 2012

27

Positional requirements for the stimulation of mRNA nuclear export by ALREX-promoting elements

Tarnawsky, Stefan P., Palazzo, Alexander F.

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.13 MB

english, 2012

28

Understanding the structural and energetic basis of inhibitor and substrate bound to the full-length NS3/4A: insights from molecular dynamics simulation, binding free energy calculation and network analysis

Xue, Weiwei, Wang, Meixia, Jin, Xiaojie, Liu, Huanxiang, Yao, Xiaojun

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 5.40 MB

english, 2012

29

A chemical proteomics approach reveals Hsp27 as a target for proapoptotic clerodane diterpenes

Faiella, Laura, Piaz, Fabrizio Dal, Bisio, Angela, Tosco, Alessandra, De Tommasi, Nunziatina

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1006 KB

english, 2012

30

Front cover

Journal:

Molecular BioSystems

Year:

2012

File:

PDF, 900 KB

2012

31

Unidirectional peristaltic movement in multisite drug binding pockets of AcrB from molecular dynamics simulations

Feng, Zhiwei, Hou, Tingjun, Li, Youyong

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 4.16 MB

english, 2012

32

Contents list

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 8.40 MB

english, 2012

33

Characterization of metalloanticancer capacity of an agglutinin from wheat

Bogoeva, Vanya P., Petrova, Lidiya P., Ivanov, Ivan B., Kulina, Hristina N., Buchvarov, Ivan Ch.

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 786 KB

english, 2012

34

A peptide probe for detection of various beta-amyloid oligomers

Hu, Yang, Su, Baihao, Zheng, HeQiu, Kim, Jin Ryoun

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.20 MB

english, 2012

35

Roles of sulfite oxidoreductase and sulfite reductase in improving desulfurization by Rhodococcus erythropolis

Aggarwal, Shilpi, Karimi, I. A., Kilbane II, John J., Lee, Dong Yup

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.66 MB

english, 2012

36

The spectral networks paradigm in high throughput mass spectrometry

Guthals, Adrian, Watrous, Jeramie D., Dorrestein, Pieter C., Bandeira, Nuno

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 3.17 MB

english, 2012

37

A novel calcineurin-independent activity of cyclosporin A in Saccharomyces cerevisiae

Singh-Babak, Sheena D., Shekhar, Tanvi, Smith, Andrew M., Giaever, Guri, Nislow, Corey, Cowen, Leah E.

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.22 MB

english, 2012

38

Design of protein congeners containing β-cyclopropylalanine

Acevedo-Rocha, Carlos G., Geiermann, Anna-Skrollan, Budisa, Nediljko, Merkel, Lars

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.34 MB

english, 2012

39

A cardiac tissue-specific binding agent of troponin I

Abd-Elgaliel, Wael R., Tung, Ching-Hsuan

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.64 MB

english, 2012

40

Functional annotation of the mesophilic-like character of mutants in a cold-adapted enzyme by self-organising map analysis of their molecular dynamics

Fraccalvieri, Domenico, Tiberti, Matteo, Pandini, Alessandro, Bonati, Laura, Papaleo, Elena

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 4.13 MB

english, 2012

41

Interaction of glycated protein and DFO mimicked hypoxia in cellular responses of HUVECs

Bala, Kanchan, Gohil, Nivedita Karmakar

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.02 MB

english, 2012

42

Emerging investigators contributors 2012

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.53 MB

english, 2012

43

Peptoid transporters: effects of cationic, amphipathic structure on their cellular uptake

Huang, Wei, Seo, Jiwon, Lin, Jennifer S., Barron, Annelise E.

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.46 MB

english, 2012

44

Inside front cover

Journal:

Molecular BioSystems

Year:

2012

File:

PDF, 1007 KB

2012