Volume 19; Issue Supplement

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Molecular Ecology
Volume 19; Issue Supplement

Molecular Ecology

Volume 19; Issue Supplement

1

Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping

RICHARD J. A. BUGGS, SRIKAR CHAMALA, WEI WU, LU GAO, GREGORY D. MAY, PATRICK S. SCHNABLE, DOUGLAS E. SOLTIS, PAMELA S. SOLTIS, W. BRAD BARBAZUK

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 215 KB

english, 2010

2

Ecogenomics: using massively parallel pyrosequencing to understand virus ecology

MARILYN J. ROOSSINCK, PRASENJIT SAHA, GRAHAM B. WILEY, JIAXI QUAN, JAMES D. WHITE, HONGSHING LAI, FELIPE CHAVARRÍA, GUOAN SHEN, BRUCE A. ROE

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 355 KB

english, 2010

3

Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow

JOCHEN B. W. WOLF, TILL BAYER, BERNHARD HAUBOLD, MARKUS SCHILHABEL, PHILIP ROSENSTIEL, DIETHARD TAUTZ

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 415 KB

english, 2010

4

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises

S. CREER, V. G. FONSECA, D. L. PORAZINSKA, R. M. GIBLIN-DAVIS, W. SUNG, D. M. POWER, M. PACKER, G. R. CARVALHO, M. L. BLAXTER, P. J. D. LAMBSHEAD, W. K. THOMAS

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 445 KB

english, 2010

5

Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines

J. B. WHITTALL, J. SYRING, M. PARKS, J. BUENROSTRO, C. DICK, A. LISTON, R. CRONN

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 857 KB

english, 2010

6

Characterization of a hotspot for mimicry: assembly of a butterfly wing transcriptome to genomic sequence at the HmYb/Sb locus

LAURA FERGUSON, SIU FAI LEE, NICOLA CHAMBERLAIN, NICOLA NADEAU, MATHIEU JORON, SIMON BAXTER, PAUL WILKINSON, ALEXIE PAPANICOLAOU, SUJAI KUMAR, THUAN-JIN KEE, RICHARD CLARK, CLAIRE DAVIDSON, REBECCA GL

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 380 KB

english, 2010

7

Effects of an MHC-DRB genotype and allele number on the load of gut parasites in the bank vole Myodes glareolus

AGNIESZKA KLOCH, WIESŁAW BABIK, ANNA BAJER, EDWARD SIŃSKI, JACEK RADWAN

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 247 KB

english, 2010

8

Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonus spp. Salmonidae)

SÉBASTIEN RENAUT, ARNE W. NOLTE, LOUIS BERNATCHEZ

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 360 KB

english, 2010

9

Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms

RALPH MEDINGER, VIOLA NOLTE, RAM VINAY PANDEY, STEFFEN JOST, BIRGIT OTTENWÄLDER, CHRISTIAN SCHLÖTTERER, JENS BOENIGK

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 362 KB

english, 2010

10

Bacterial diversity in a glacier foreland of the high Arctic

URSEL M.E. SCHÜTTE, ZAID ABDO, JAMES FOSTER, JACQUES RAVEL, JOHN BUNGE, BJØRN SOLHEIM, LARRY J. FORNEY

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 220 KB

english, 2010

11

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

THORSTEN STOECK, DAVID BASS, MARKUS NEBEL, RICHARD CHRISTEN, MEREDITH D. M. JONES, HANS-WERNER BREINER, THOMAS A. RICHARDS

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 4.47 MB

english, 2010

12

A genetic basis for the phenotypic differentiation between siscowet and lean lake trout (Salvelinus namaycush)

FREDERICK GOETZ, DANIEL ROSAUER, SHAWN SITAR, GILES GOETZ, CRYSTAL SIMCHICK, STEVEN ROBERTS, RONALD JOHNSON, CHERYL MURPHY, CHARLES R. BRONTE, SIMON MACKENZIE

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 438 KB

english, 2010

13

mlRho – a program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes

BERNHARD HAUBOLD, PETER PFAFFELHUBER, MICHAEL LYNCH

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 242 KB

english, 2010

14

Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites

ARI JUMPPONEN, KENNETH L. JONES, J. DAVID MATTOX, CHULEE YAEGE

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 412 KB

english, 2010

15

Assembly free comparative genomics of short-read sequence data discovers the needles in the haystack

CHARLES H. CANNON, CHAI-SHIAN KUA, D. ZHANG, J.R. HARTING

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 838 KB

english, 2010

16

Microbial ecological response of the intestinal flora of Peromyscus maniculatus and P. leucopus to heavy metal contamination

JOSEPH D. COOLON, KENNETH L. JONES, SANJEEV NARAYANAN, SAMANTHA M. WISELY

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 374 KB

english, 2010

17

Genome-wide SNP detection in the great tit Parus major using high throughput sequencing

NIKKIE E. M. VAN BERS, KEES VAN OERS, HINDRIK H. D. KERSTENS, BERT W. DIBBITS, RICHARD P. M. A. CROOIJMANS, MARCEL E. VISSER, MARTIEN A. M. GROENEN

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 268 KB

english, 2010

18

Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species

AXEL KÜNSTNER, JOCHEN B. W. WOLF, NICLAS BACKSTRÖM, OSCEOLA WHITNEY, CHRISTOPHER N. BALAKRISHNAN, LAINY DAY, SCOTT V. EDWARDS, DANIEL E. JANES, BARNEY A. SCHLINGER, RICHARD K. WILSON, ERICH D. JARVIS,

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 452 KB

english, 2010

19

Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes

K. R. ELMER, S. FAN, H. M. GUNTER, J. C. JONES, S. BOEKHOFF, S. KURAKU, A. MEYER

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 370 KB

english, 2010

20

Next Generation Molecular Ecology

DIETHARD TAUTZ, HANS ELLEGREN, DETLEF WEIGEL

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 88 KB

english, 2010

21

Genome-wide analysis of alternative splicing evolution among Mus subspecies

BETTINA HARR, LESLIE M. TURNER

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 2.89 MB

english, 2010

22

Key considerations for measuring allelic expression on a genomic scale using high-throughput sequencing

PIERRE FONTANILLAS, CHRISTIAN R. LANDRY, PATRICIA J. WITTKOPP, CARSTEN RUSS, JONATHAN D. GRUBER, CHAD NUSBAUM, DANIEL L. HARTL

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 597 KB

english, 2010

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