Volume 15; Issue 4

Molecular Ecology Resources

Volume 15; Issue 4

1

Simulating and detecting autocorrelation of molecular evolutionary rates among lineages

Ho, Simon Y. W., Duchêne, Sebastián, Duchêne, David

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 313 KB

english, 2015

2

Optimization of the genotyping-by-sequencing strategy for population genomic analysis in conifers

Pan, Jin, Wang, Baosheng, Pei, Zhi-Yong, Zhao, Wei, Gao, Jie, Mao, Jian-Feng, Wang, Xiao-Ru

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 340 KB

english, 2015

3

Barcoding Neotropical birds: assessing the impact of nonmonophyly in a highly diverse group

Chaves, Bárbara R. N., Chaves, Anderson V., Nascimento, Augusto C. A., Chevitarese, Juliana, Vasconcelos, Marcelo F., Santos, Fabrício R.

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 548 KB

english, 2015

4

Towards a better understanding of Apis mellifera and Varroa destructor microbiomes: introducing ‘ phyloh ’ as a novel phylogenetic diversity analysis tool

Sandionigi, A., Vicario, S., Prosdocimi, E. M., Galimberti, A., Ferri, E., Bruno, A., Balech, B., Mezzasalma, V., Casiraghi, M.

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 542 KB

english, 2015

5

Mapping active promoters by ChIP-seq profiling of H3K4me3 in cichlid fish - a first step to uncover cis-regulatory elements in ecological model teleosts

Kratochwil, Claudius F., Meyer, Axel

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 596 KB

english, 2015

6

SNP discovery in nonmodel organisms: strand bias and base-substitution errors reduce conversion rates

Gonçalves da Silva, Anders, Barendse, William, Kijas, James W., Barris, Wes C., McWilliam, Sean, Bunch, Rowan J., McCullough, Russell, Harrison, Blair, Hoelzel, A. Rus, England, Phillip R.

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 384 KB

english, 2015

7

A comprehensive DNA barcode database for Central European beetles with a focus on Germany: adding more than 3500 identified species to BOLD

Hendrich, Lars, Morinière, Jérôme, Haszprunar, Gerhard, Hebert, Paul D. N., Hausmann, Axel, Köhler, Frank, Balke, Michael

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 1.13 MB

english, 2015

8

De novo assembly of the transcriptome of Acanthaster planci testes

Stewart, Michael James, Stewart, Praphaporn, Rivera-Posada, Jairo

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 968 KB

english, 2015

9

New primers for DNA barcoding of digeneans and cestodes (Platyhelminthes)

Van Steenkiste, Niels, Locke, Sean A., Castelin, Magalie, Marcogliese, David J., Abbott, Cathryn L.

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 215 KB

english, 2015

10

Estimating pairwise relatedness between individuals with different levels of ploidy

Huang, Kang, Ritland, Kermit, Guo, Songtao, Dunn, Derek W., Chen, Dan, Ren, Yi, Qi, Xiaoguang, Zhang, Pei, He, Gang, Li, Baoguo

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 600 KB

english, 2015

11

One species in eight: DNA barcodes from type specimens resolve a taxonomic quagmire

Mutanen, Marko, Kekkonen, Mari, Prosser, Sean W. J., Hebert, Paul D. N., Kaila, Lauri

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 906 KB

english, 2015

12

Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing

Campbell, Nathan R., Harmon, Stephanie A., Narum, Shawn R.

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 1.31 MB

english, 2015

13

DNA barcoding of Rhododendron (Ericaceae), the largest Chinese plant genus in biodiversity hotspots of the Himalaya-Hengduan Mountains

Yan, Li-Jun, Liu, Jie, Möller, Michael, Zhang, Lin, Zhang, Xue-Mei, Li, De-Zhu, Gao, Lian-Ming

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 646 KB

english, 2015

14

Next-generation sequencing workflow for assembly of nonmodel mitogenomes exemplified with North Pacific albatrosses ( Phoebastria spp.)

Lounsberry, Z. T., Brown, S. K., Collins, P. W., Henry, R. W., Newsome, S. D., Sacks, B. N.

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 336 KB

english, 2015

15

First insights into the giant panda ( Ailuropoda melanoleuca ) blood transcriptome: a resource for novel gene loci and immunogenetics

Du, Lianming, Li, Wujiao, Fan, Zhenxin, Shen, Fujun, Yang, Mingyu, Wang, Zili, Jian, Zuoyi, Hou, Rong, Yue, Bisong, Zhang, Xiuyue

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 762 KB

english, 2015

16

orchard : Paternity program for autotetraploid species

Spielmann, A., Harris, S. A., Boshier, D. H., Vinson, C. C.

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 111 KB

english, 2015

17

Universal and blocking primer mismatches limit the use of high-throughput DNA sequencing for the quantitative metabarcoding of arthropods

Piñol, J., Mir, G., Gomez-Polo, P., Agustí, N.

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 660 KB

english, 2015

18

Molecular detection of invertebrate prey in vertebrate diets: trophic ecology of Caribbean island lizards

Kartzinel, Tyler R., Pringle, Robert M.

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 557 KB

english, 2015

19

Detection and decay rates of prey and prey symbionts in the gut of a predator through metagenomics

Paula, Débora P., Linard, Benjamin, Andow, David A., Sujii, Edison R., Pires, Carmen S. S., Vogler, Alfried P.

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 325 KB

english, 2015

20

High-throughput SNPs for all: genotyping-in-thousands

Pavey, Scott A.

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 178 KB

english, 2015

21

Tree imbalance causes a bias in phylogenetic estimation of evolutionary timescales using heterochronous sequences

Duchêne, David, Duchêne, Sebastian, Ho, Simon Y. W.

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 252 KB

english, 2015

22

Genomic Resources Notes accepted 1 February 2015 - 31 March 2015

Arthofer, Wolfgang, Bertini, Laura, Caruso, Carla, Cicconardi, Francesco, Delph, Lynda F., Fields, Peter D., Ikeda, Minoru, Minegishi, Yuki, Proietti, Silvia, Ritthammer, Heike, Schlick-Steiner, Birgi

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 86 KB

english, 2015

23

Balancing sample accumulation and DNA degradation rates to optimize noninvasive genetic sampling of sympatric carnivores

Lonsinger, Robert C., Gese, Eric M., Dempsey, Steven J., Kluever, Bryan M., Johnson, Timothy R., Waits, Lisette P.

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 332 KB

english, 2015

24

Reverse genetics in the tide pool: knock-down of target gene expression via RNA interference in the copepod Tigriopus californicus

Barreto, Felipe S., Schoville, Sean D., Burton, Ronald S.

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 263 KB

english, 2015

25

Effect of microsatellite selection on individual and population genetic inferences: an empirical study using cross-specific and species-specific amplifications

Queirós, J., Godinho, R., Lopes, S., Gortazar, C., de la Fuente, J., Alves, P. C.

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 409 KB

english, 2015

26

Evaluating the interaction of faecal pellet deposition rates and DNA degradation rates to optimize sampling design for DNA-based mark-recapture analysis of Sonoran pronghorn

Woodruff, S. P., Johnson, T. R., Waits, L. P.

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 267 KB

english, 2015

27

Where have all the tadpoles gone? Individual genetic tracking of amphibian larvae until adulthood

Ringler, Eva, Mangione, Rosanna, Ringler, Max

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 293 KB

english, 2015

28

DNA barcoding largely supports 250 years of classical taxonomy: identifications for Central European bees (Hymenoptera, Apoidea partim )

Schmidt, Stefan, Schmid-Egger, Christian, Morinière, Jérôme, Haszprunar, Gerhard, Hebert, Paul D. N.

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 206 KB

english, 2015