Volume 16; Issue 2

Molecular Ecology Resources

Volume 16; Issue 2

1

Potential and pitfalls of eukaryotic metagenome skimming: a test case for lichens

Greshake, Bastian, Zehr, Simonida, Dal Grande, Francesco, Meiser, Anjuli, Schmitt, Imke, Ebersberger, Ingo

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 1.10 MB

english, 2016

2

Optimization of next-generation sequencing transcriptome annotation for species lacking sequenced genomes

Ockendon, Nina F., O'Connell, Lauren A., Bush, Stephen J., Monzón-Sandoval, Jimena, Barnes, Holly, Székely, Tamás, Hofmann, Hans A., Dorus, Steve, Urrutia, Araxi O.

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 386 KB

english, 2016

3

Mitochondrial capture enriches mito-DNA 100 fold, enabling PCR-free mitogenomics biodiversity analysis

Liu, Shanlin, Wang, Xin, Xie, Lin, Tan, Meihua, Li, Zhenyu, Su, Xu, Zhang, Hao, Misof, Bernhard, Kjer, Karl M., Tang, Min, Niehuis, Oliver, Jiang, Hui, Zhou, Xin

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 349 KB

english, 2016

4

The rpb2 gene represents a viable alternative molecular marker for the analysis of environmental fungal communities

Větrovský, Tomáš, Kolařík, Miroslav, Žifčáková, Lucia, Zelenka, Tomáš, Baldrian, Petr

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 383 KB

english, 2016

5

Development of chloroplast genomic resources for Cynara

Curci, Pasquale L., De Paola, Domenico, Sonnante, Gabriella

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 462 KB

english, 2016

6

Characterization of the genome and transcriptome of the blue tit Cyanistes caeruleus : polymorphisms, sex-biased expression and selection signals

Mueller, Jakob C., Kuhl, Heiner, Timmermann, Bernd, Kempenaers, Bart

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 1.27 MB

english, 2016

7

A novel environmental DNA approach to quantify the cryptic invasion of non-native genotypes

Uchii, Kimiko, Doi, Hideyuki, Minamoto, Toshifumi

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 1.21 MB

english, 2016

8

A note on the use of multiple linear regression in molecular ecology

Frasier, Timothy R.

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 449 KB

english, 2016

9

Comparing the performance of three ancient DNA extraction methods for high-throughput sequencing

Gamba, Cristina, Hanghøj, Kristian, Gaunitz, Charleen, Alfarhan, Ahmed H., Alquraishi, Saleh A., Al-Rasheid, Khaled A. S., Bradley, DANIEL G., Orlando, Ludovic

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 1.39 MB

english, 2016

10

High-throughput genotyping of Anopheles mosquitoes using intact legs by Agena Biosciences iPLEX

Fabrigar, Danica Joy, Hubbart, Christina, Miles, Alistair, Rockett, Kirk

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 211 KB

english, 2016

11

Comparative study of the validity of three regions of the 18S-rRNA gene for massively parallel sequencing-based monitoring of the planktonic eukaryote community

Tanabe, Akifumi S., Nagai, Satoshi, Hida, Kohsuke, Yasuike, Motoshige, Fujiwara, Atushi, Nakamura, Yoji, Takano, Yoshihito, Katakura, Seiji

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 1.32 MB

english, 2016

12

High-density SNP assay development for genetic analysis in maritime pine ( Pinus pinaster )

Plomion, C., Bartholomé, J., Lesur, I., Boury, C., Rodríguez-Quilón, I., Lagraulet, H., Ehrenmann, F., Bouffier, L., Gion, J. M., Grivet, D., de Miguel, M., de María, N., Cervera, M. T., Bagnoli, F.,

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 671 KB

english, 2016

13

Evaluating environmental DNA-based quantification of ranavirus infection in wood frog populations

Hall, Emily M., Crespi, Erica J., Goldberg, Caren S., Brunner, Jesse L.

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 239 KB

english, 2016

14

Development of highly reliable in silico SNP resource and genotyping assay from exome capture and sequencing: an example from black spruce ( Picea mariana )

Pavy, Nathalie, Gagnon, France, Deschênes, Astrid, Boyle, Brian, Beaulieu, Jean, Bousquet, Jean

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 218 KB

english, 2016

15

Intra-individual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it?

Scarcelli, N., Mariac, C., Couvreur, T. L. P., Faye, A., Richard, D., Sabot, F., Berthouly-Salazar, C., Vigouroux, Y.

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 500 KB

english, 2016

16

DNA barcodes from century-old type specimens using next-generation sequencing

Prosser, Sean W. J., deWaard, Jeremy R., Miller, Scott E., Hebert, Paul D. N.

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 891 KB

english, 2016

17

An ecological model organism flies into the genomics era

Santure, Anna W.

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 135 KB

english, 2016

18

P-LOCI: a computer program for choosing the most efficient set of loci for parentage assignment

Matson, Sean E., Camara, Mark D., Eichert, Will, Banks, Michael A.

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 64 KB

english, 2016

19

amplisas : a web server for multilocus genotyping using next-generation amplicon sequencing data

Sebastian, Alvaro, Herdegen, Magdalena, Migalska, Magdalena, Radwan, Jacek

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 891 KB

english, 2016

20

MicNeSs: genotyping microsatellite loci from a collection of (NGS) reads

Suez, Marie, Behdenna, Abdelkader, Brouillet, Sophie, Graça, Paula, Higuet, Dominique, Achaz, Guillaume

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 361 KB

english, 2016

21

hybridcheck : software for the rapid detection, visualization and dating of recombinant regions in genome sequence data

Ward, Ben J., van Oosterhout, Cock

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 343 KB

english, 2016

22

TESS3: fast inference of spatial population structure and genome scans for selection

Caye, Kevin, Deist, Timo M., Martins, Helena, Michel, Olivier, François, Olivier

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 3.58 MB

english, 2016

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