Volume 16; Issue 4

Molecular Ecology Resources

Volume 16; Issue 4

1

cloncase : Estimation of sex frequency and effective population size by clonemate resampling in partially clonal organisms

Ali, Sajid, Soubeyrand, Samuel, Gladieux, Pierre, Giraud, Tatiana, Leconte, Marc, Gautier, Angélique, Mboup, Mamadou, Chen, Wanquan, de Vallavieille-Pope, Claude, Enjalbert, Jérôme

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 651 KB

english, 2016

2

High rates of phasing errors in highly polymorphic species with low levels of linkage disequilibrium

Bukowicki, Marek, Franssen, Susanne U., Schlötterer, Christian

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 442 KB

english, 2016

3

Hybridization relics complicate barcode-based identification of species in earthworms

Dupont, L., Porco, D., Symondson, W. O. C., Roy, V.

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 503 KB

english, 2016

4

Using occupancy modelling to compare environmental DNA to traditional field methods for regional-scale monitoring of an endangered aquatic species

Schmelzle, Molly C., Kinziger, Andrew P.

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 480 KB

english, 2016

5

Don't put all your eggs in one basket: a cost-effective and powerful method to optimize primer choice for rRNA environmental community analyses using the Fluidigm Access Array

Brown, Shawn P., Ferrer, Astrid, Dalling, James W., Heath, Katy D.

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 482 KB

english, 2016

6

Finding the right coverage: the impact of coverage and sequence quality on single nucleotide polymorphism genotyping error rates

Fountain, Emily D., Pauli, Jonathan N., Reid, Brendan N., Palsbøll, Per J., Peery, M. Zachariah

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 414 KB

english, 2016

7

New resources for genetic studies in Populus nigra : genome-wide SNP discovery and development of a 12k Infinium array

Faivre-Rampant, P., Zaina, G., Jorge, V., Giacomello, S., Segura, V., Scalabrin, S., Guérin, V., De Paoli, E., Aluome, C., Viger, M., Cattonaro, F., Payne, A., PaulStephenRaj, P., Le Paslier, M. C., B

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 620 KB

english, 2016

8

Genomewide single nucleotide polymorphism discovery in Atlantic salmon ( Salmo salar ): validation in wild and farmed American and European populations

Yáñez, J. M., Naswa, S., López, M. E., Bassini, L., Correa, K., Gilbey, J., Bernatchez, L., Norris, A., Neira, R., Lhorente, J. P., Schnable, P. S., Newman, S., Mileham, A., Deeb, N., Di Genova, A., M

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 278 KB

english, 2016

9

De novo assembly and characterization of leaf and floral transcriptomes of the hybridizing bromeliad species ( Pitcairnia spp.) adapted to Neotropical Inselbergs

Palma-Silva, C., Ferro, M., Bacci, M., Turchetto-Zolet, A. C.

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 400 KB

english, 2016

10

GIbPSs: a toolkit for fast and accurate analyses of genotyping-by-sequencing data without a reference genome

Hapke, A., Thiele, D.

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 220 KB

english, 2016

11

Fine-tuning for the tropics: application of eDNA technology for invasive fish detection in tropical freshwater ecosystems

Robson, Heather L. A., Noble, Tansyn H., Saunders, Richard J., Robson, Simon K. A., Burrows, Damien W., Jerry, Dean R.

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 363 KB

english, 2016

12

Identification of CR1 retroposons in Arborophila rufipectus and their application to Phasianidae phylogeny

Cui, Yaoyao, Yan, Chaochao, Sun, Tianlin, Li, Jing, Yue, Bisong, Zhang, Xiuyue, Li, Jing

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 448 KB

english, 2016

13

Cryptic diversity revealed by DNA barcoding in Colombian illegally traded bird species

Mendoza, Ángela María, Torres, María Fernanda, Paz, Andrea, Trujillo-Arias, Natalia, López-Alvarez, Diana, Sierra, Socorro, Forero, Fernando, Gonzalez, Mailyn A.

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 697 KB

english, 2016

14

Population structure of Atlantic mackerel inferred from RAD-seq-derived SNP markers: effects of sequence clustering parameters and hierarchical SNP selection

Rodríguez-Ezpeleta, Naiara, Bradbury, Ian R., Mendibil, Iñaki, Álvarez, Paula, Cotano, Unai, Irigoien, Xabier

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 716 KB

english, 2016

15

A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them

Humble, E., Martinez-Barrio, A., Forcada, J., Trathan, P. N., Thorne, M. A. S., Hoffmann, M., Wolf, J. B. W., Hoffman, J. I.

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 306 KB

english, 2016

16

The importance of including imperfect detection models in eDNA experimental design

Willoughby, Janna R., Wijayawardena, Bhagya K., Sundaram, Mekala, Swihart, Robert K., DeWoody, J. Andrew

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 250 KB

english, 2016

17

Detecting the movement and spawning activity of bigheaded carps with environmental DNA

Erickson, Richard A., Rees, Christopher B., Coulter, Alison A., Merkes, Christopher M., McCalla, Sunnie G., Touzinsky, Katherine F., Walleser, Liza, Goforth, Reuben R., Amberg, Jon J.

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 361 KB

english, 2016