Volume 65; Issue 2

Molecular Phylogenetics and Evolution

Volume 65; Issue 2

1

From Amazonia to the Atlantic forest: Molecular phylogeny of Phyzelaphryninae frogs reveals unexpected diversity and a striking biogeographic pattern emphasizing conservation challenges

Fouquet, Antoine, Loebmann, Daniel, Castroviejo-Fisher, Santiago, Padial, José M., Orrico, Victor G.D., Lyra, Mariana L., Roberto, Igor Joventino, Kok, Philippe J.R., Haddad, Célio F.B., Rodrigues, Mi

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

File:

PDF, 607 KB

2012

2

Phylogeny of scale-worms (Aphroditiformia, Annelida), assessed from 18SrRNA, 28SrRNA, 16SrRNA, mitochondrial cytochrome c oxidase subunit I (COI), and morphology

Norlinder, Erika, Nygren, Arne, Wiklund, Helena, Pleijel, Fredrik

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 1022 KB

english, 2012

3

Refugia within refugia as a key to disentangle the genetic pattern of a highly variable species: The case of Rana temporaria Linnaeus, 1758 (Anura, Ranidae)

Stefani, Fabrizio, Gentilli, Augusto, Sacchi, Roberto, Razzetti, Edoardo, Pellitteri-Rosa, Daniele, Pupin, Fabio, Galli, Paolo

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 513 KB

english, 2012

4

The phylogenetic position of some Philippine “babblers” spans the muscicapoid and sylvioid bird radiations

Oliveros, Carl H., Reddy, Sushma, Moyle, Robert G.

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 364 KB

english, 2012

5

Phylogenetically diverse groups of Bradyrhizobium isolated from nodules of Crotalaria spp., Indigofera spp., Erythrina brucei and Glycine max growing in Ethiopia

Aserse, Aregu Amsalu, Räsänen, Leena A., Aseffa, Fassil, Hailemariam, Asfaw, Lindström, Kristina

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 551 KB

english, 2012

6

Convergent evolution of defense mechanisms in oribatid mites (Acari, Oribatida) shows no “ghosts of predation past”

Pachl, Patrick, Domes, Katja, Schulz, Garvin, Norton, Roy A., Scheu, Stefan, Schaefer, Ina, Maraun, Mark

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 2.00 MB

english, 2012

7

Phylogeny and biogeography of the Anderson’s crocodile newt, Echinotriton andersoni (Amphibia: Caudata), as revealed by mitochondrial DNA sequences

Honda, Masanao, Matsui, Masafumi, Tominaga, Atsushi, Ota, Hidetoshi, Tanaka, Satoshi

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 971 KB

english, 2012

8

Tramps, narrow endemics and morphologically cryptic species in the epiphyllous liverwort Diplasiolejeunea

Dong, Shanshan, Schäfer-Verwimp, Alfons, Meinecke, Philipp, Feldberg, Kathrin, Bombosch, Andrea, Pócs, Tamás, Schmidt, Alexander R., Reitner, Joachim, Schneider, Harald, Heinrichs, Jochen

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 976 KB

english, 2012

9

Species tree estimation for a deep phylogenetic divergence in the New World monkeys (Primates: Platyrrhini)

Perez, S. Ivan, Klaczko, Julia, dos Reis, Sérgio F.

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 312 KB

english, 2012

10

Phylogenetic relationships within anuran clade Terrarana, with emphasis on the placement of Brazilian Atlantic rainforest frogs genus Ischnocnema (Anura: Brachycephalidae)

Canedo, Clarissa, Haddad, Célio F.B.

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 3.33 MB

english, 2012

11

Evolution in the deep sea: Biological traits, ecology and phylogenetics of pelagic copepods

Laakmann, Silke, Auel, Holger, Kochzius, Marc

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 964 KB

english, 2012

12

Molecular phylogeny of extant equids and effects of ancestral polymorphism in resolving species-level phylogenies

Steiner, Cynthia C., Mitelberg, Anna, Tursi, Rosanna, Ryder, Oliver A.

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 945 KB

english, 2012

13

Phylogeny, biogeography, and evolution of sex expression in the southern hemisphere genus Leptinella (Compositae, Anthemideae)

Himmelreich, Sven, Breitwieser, Ilse, Oberprieler, Christoph

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 1.90 MB

english, 2012

14

Alignment-free distance measure based on return time distribution for sequence analysis: Applications to clustering, molecular phylogeny and subtyping

Kolekar, Pandurang, Kale, Mohan, Kulkarni-Kale, Urmila

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 1.89 MB

english, 2012

15

Using nuclear gene data for plant phylogenetics: Progress and prospects

Zimmer, Elizabeth A., Wen, Jun

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 785 KB

english, 2012

16

The effects of sampling on delimiting species from multi-locus sequence data

Rittmeyer, Eric N., Austin, Christopher C.

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 1.23 MB

english, 2012

17

The effect of sampling from subdivided populations on species identification with DNA barcodes using a Bayesian statistical approach

Lou, Melanie, Golding, G. Brian

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 1002 KB

english, 2012

18

Molecular phylogeny and character evolution in terete-stemmed Andean opuntias (Cactaceae−Opuntioideae)

Ritz, C.M., Reiker, J., Charles, G., Hoxey, P., Hunt, D., Lowry, M., Stuppy, W., Taylor, N.

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 2.29 MB

english, 2012

19

Phylogenetic analysis reveals multiple introductions of Cynodon species in Australia

Jewell, M., Frère, C.H., Harris-Shultz, K., Anderson, W.F., Godwin, I.D., Lambrides, C.J.

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 490 KB

english, 2012

20

Acrobat ants go global – Origin, evolution and systematics of the genus Crematogaster (Hymenoptera: Formicidae)

Blaimer, Bonnie B.

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 2.15 MB

english, 2012

21

Full modeling versus summarizing gene-tree uncertainty: Method choice and species-tree accuracy

Lacey Knowles, L., Lanier, Hayley C., Klimov, Pavel B., He, Qixin

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 377 KB

english, 2012

22

Eight independent nuclear genes support monophyly of the plovers: The role of mutational variance in gene trees

Baker, Allan J., Yatsenko, Yuri, Tavares, Erika Sendra

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 874 KB

english, 2012

23

Molecular evolution of the Asian francolins (Francolinus, Galliformes): A modern reappraisal of a classic study in speciation

Forcina, G., Panayides, P., Guerrini, M., Nardi, F., Gupta, B.K., Mori, E., Al-Sheikhly, O.F., Mansoori, J., Khaliq, I., Rank, D.N., Parasharya, B.M., Khan, A.A., Hadjigerou, P., Barbanera, F.

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 1.55 MB

english, 2012

24

A molecular phylogenetic analysis of the vampire moths and their fruit-piercing relatives (Lepidoptera: Erebidae: Calpinae)

Zaspel, J.M., Zahiri, R., Hoy, M.A., Janzen, D., Weller, S.J., Wahlberg, N.

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 619 KB

english, 2012

25

Molecular phylogeny of the Entomophthoromycota

Gryganskyi, Andrii P., Humber, Richard A., Smith, Matthew E., Miadlikovska, Jolanta, Wu, Steven, Voigt, Kerstin, Walther, Grit, Anishchenko, Iryna M., Vilgalys, Rytas

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 2.14 MB

english, 2012

26

Diversification in North American arid lands: Niche conservatism, divergence and expansion of habitat explain speciation in the genus Ephedra

Loera, Israel, Sosa, Victoria, Ickert-Bond, Stefanie M.

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 675 KB

english, 2012

27

Genealogical analyses of multiple loci of litostomatean ciliates (Protista, Ciliophora, Litostomatea)

Vd’ačný, Peter, Bourland, William A., Orsi, William, Epstein, Slava S., Foissner, Wilhelm

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 2.26 MB

english, 2012

28

AFLP markers resolve intra-specific relationships and infer genetic structure among lineages of the canyon treefrog, Hyla arenicolor

Klymus, Katy E., Carl Gerhardt, H.

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 1.17 MB

english, 2012

29

Molecular phylogenetics in 2D: ITS2 rRNA evolution and sequence-structure barcode from Veneridae to Bivalvia

Salvi, Daniele, Mariottini, Paolo

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 888 KB

english, 2012

30

Genetic divergence and population demography of the Hainan endemic Black-throated Laughingthrush (Aves: Timaliidae, Garrulax chinensis monachus) and adjacent mainland subspecies

Wu, Yuchun, Huang, Junhui, Zhang, Min, Luo, Site, Zhang, Yanhua, Lei, Fumin, Sheldon, Frederick H., Zou, Fasheng

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 930 KB

english, 2012

31

Phylogeny and cryptic diversification in Southeast Asian flying geckos

Brown, Rafe M., Siler, Cameron D., Lee Grismer, L., Das, Indraneil, McGuire, Jimmy A.

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 1.08 MB

english, 2012

32

CO2: Editorial Board

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 34 KB

english, 2012

33

Phylogeny and colonization history of Pringlea antiscorbutica (Brassicaceae), an emblematic endemic from the South Indian Ocean Province

Bartish, Igor V., Aïnouche, Abdelkader, Jia, Dongrui, Bergstrom, Dana, Chown, Steven L., Winkworth, Richard C., Hennion, Françoise

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 981 KB

english, 2012

34

Host–plants shape insect diversity: Phylogeny, origin, and species diversity of native Hawaiian leafhoppers (Cicadellidae: Nesophrosyne)

Bennett, Gordon M., O’Grady, Patrick M.

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 1.51 MB

english, 2012

35

Molecular phylogeny of the cyprinid tribe Labeonini (Teleostei: Cypriniformes)

Yang, Lei, Arunachalam, M., Sado, Tetsuya, Levin, Boris A., Golubtsov, Alexander S., Freyhof, Jörg, Friel, John P., Chen, Wei-Jen, Vincent Hirt, M., Manickam, Raja, Agnew, Mary K., Simons, Andrew M.,

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 1013 KB

english, 2012

36

Comparative phylogeography of two widespread magpies: Importance of habitat preference and breeding behavior on genetic structure in China

Zhang, Ruiying, Song, Gang, Qu, Yanhua, Alström, Per, Ramos, Raül, Xing, Xiaoying, Ericson, Per G.P., Fjeldså, Jon, Wang, Haitao, Yang, Xiaojun, Kristin, Anton, Shestopalov, Alexander M., Choe, Jae Ch

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 1.25 MB

english, 2012

37

Deep phylogeographic divergence and cytonuclear discordance in the grasshopper Oedaleus decorus

Kindler, Eveline, Arlettaz, Raphaël, Heckel, Gerald

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 1004 KB

english, 2012

38

Exploring generic delimitation within the fern family Thelypteridaceae

He, Li-Juan, Zhang, Xian-Chun

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 2.08 MB

english, 2012

39

A preliminary phylogeny of the genus Cunila D. Royen ex L. (Lamiaceae) based on ITS rDNA and trnL-F regions

Agostini, G., Echeverrigaray, S., Souza-Chies, T.T.

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 989 KB

english, 2012

40

A mapping of an ensemble of mitochondrial sequences for various organisms into 3D space based on the word composition

Aita, Takuyo, Nishigaki, Koichi

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 1.73 MB

english, 2012

41

Molecular phylogenetics of squirrelfishes and soldierfishes (Teleostei: Beryciformes: Holocentridae): Reconciling more than 100 years of taxonomic confusion

Dornburg, Alex, Moore, Jon A., Webster, Rachel, Warren, Dan L., Brandley, Matthew C., Iglesias, Teresa L., Wainwright, Peter C., Near, Thomas J.

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 2.26 MB

english, 2012