Volume 70

Molecular Phylogenetics and Evolution

Volume 70

1

Phylogenetics of a recent radiation in the mallards and allies (Aves: Anas): Inferences from a genomic transect and the multispecies coalescent

Lavretsky, Philip, McCracken, Kevin G., Peters, Jeffrey L.

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 810 KB

english, 2014

2

Molecular phylogeny, biogeography, and host plant shifts in the bee genus Melitta (Hymenoptera: Anthophila)

Dellicour, Simon, Lecocq, Thomas, Kuhlmann, Michael, Mardulyn, Patrick, Michez, Denis

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.43 MB

english, 2014

3

Phylogeny and biogeography of the fruit doves (Aves: Columbidae)

Cibois, Alice, Thibault, Jean-Claude, Bonillo, Céline, Filardi, Christopher E., Watling, Dick, Pasquet, Eric

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 6.26 MB

english, 2014

4

From species divergence to population structure: A multimarker approach on the most basal lineage of Salamandridae, the spectacled salamanders (genus Salamandrina) from Italy

Hauswaldt, J. Susanne, Angelini, Claudio, Gehara, Marcelo, Benavides, Edgar, Polok, Andy, Steinfartz, Sebastian

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.73 MB

english, 2014

5

The hemagglutinin mutation E391K of pandemic 2009 influenza revisited

Radomski, Jan P., Płoński, Piotr, Zagórski-Ostoja, Włodzimierz

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.61 MB

english, 2014

6

Ancient mitochondrial genome reveals unsuspected taxonomic affinity of the extinct Chatham duck (Pachyanas chathamica) and resolves divergence times for New Zealand and sub-Antarctic brown teals

Mitchell, Kieren J., Wood, Jamie R., Scofield, R. Paul, Llamas, Bastien, Cooper, Alan

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.17 MB

english, 2014

7

A multilocus molecular phylogeny of combtooth blennies (Percomorpha: Blennioidei: Blenniidae): Multiple invasions of intertidal habitats

Hundt, Peter J., Iglésias, Samuel P., Hoey, Andrew S., Simons, Andrew M.

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 740 KB

english, 2014

8

Cryptic speciation reversal in the Etheostoma zonale (Teleostei: Percidae) species group, with an examination of the effect of recombination and introgression on species tree inference

Halas, Dominik, Simons, Andrew M.

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 2.93 MB

english, 2014

9

Phylogeny of the Elopomorpha (Teleostei): Evidence from six nuclear and mitochondrial markers

Chen, Jhen-Nien, López, J. Andrés, Lavoué, Sébastien, Miya, Masaki, Chen, Wei-Jen

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.91 MB

english, 2014

10

Gene tree rooting methods give distributions that mimic the coalescent process

Tian, Yuan, Kubatko, Laura S.

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 757 KB

english, 2014

11

Increased sampling of both genes and taxa improves resolution of phylogenetic relationships within Magnoliidae, a large and early-diverging clade of angiosperms

Massoni, Julien, Forest, Félix, Sauquet, Hervé

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 2.13 MB

english, 2014

12

Outgroup effects on root position and tree topology in the AFLP phylogeny of a rapidly radiating lineage of cichlid fish

Kirchberger, Paul C., Sefc, Kristina M., Sturmbauer, Christian, Koblmüller, Stephan

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 647 KB

english, 2014

13

Molecular systematics and plumage coloration evolution of an enigmatic babbler (Pomatorhinus ruficollis) in East Asia

Dong, Feng, Li, Shou-Hsien, Zou, Fa-Sheng, Lei, Fu-Min, Liang, Wei, Yang, Jun-Xing, Yang, Xiao-Jun

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 886 KB

english, 2014

14

How low can you go? The effects of mutation rate on the accuracy of species-tree estimation

Lanier, Hayley C., Huang, Huateng, Knowles, L. Lacey

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 2.80 MB

english, 2014

15

Assessing species boundaries and the phylogenetic position of the rare Szechwan ratsnake, Euprepiophis perlaceus (Serpentes: Colubridae), using coalescent-based methods

Chen, Xin, Jiang, Ke, Guo, Peng, Huang, Song, Rao, Dingqi, Ding, Li, Takeuchi, Hirohiko, Che, Jing, Zhang, Ya-ping, Myers, Edward A., Burbrink, Frank T.

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 626 KB

english, 2014

16

Inferring geographic range evolution of a pantropical tribe in the coffee family (Lasiantheae, Rubiaceae) in the face of topological uncertainty

Smedmark, Jenny E.E., Razafimandimbison, Sylvain G., Wikström, Niklas, Bremer, Birgitta

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 10.97 MB

english, 2014

17

Developing nuclear DNA phylogenetic markers in the angiosperm genus Leucadendron (Proteaceae): A next-generation sequencing transcriptomic approach

Tonnabel, Jeanne, Olivieri, Isabelle, Mignot, Agnès, Rebelo, Anthony, Justy, Fabienne, Santoni, Sylvain, Caroli, Stéfanie, Sauné, Laure, Bouchez, Olivier, Douzery, Emmanuel J.P.

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 2.34 MB

english, 2014

18

Phylogenetic relationships of the operculate land snail genus Cyclophorus Montfort, 1810 in Thailand

Nantarat, Nattawadee, Tongkerd, Piyoros, Sutcharit, Chirasak, Wade, Christopher M., Naggs, Fred, Panha, Somsak

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.11 MB

english, 2014

19

BaCoCa – A heuristic software tool for the parallel assessment of sequence biases in hundreds of gene and taxon partitions

Kück, Patrick, Struck, Torsten H.

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.38 MB

english, 2014

20

Hidden diversity in the Andes: Comparison of species delimitation methods in montane marsupials

Giarla, Thomas C., Voss, Robert S., Jansa, Sharon A.

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 3.24 MB

english, 2014

21

Substantial incongruence among the morphology, taxonomy, and molecular phylogeny of the land snails Aegista, Landouria, Trishoplita, and Pseudobuliminus (Pulmonata: Bradybaenidae) occurring in East Asia

Hirano, Takahiro, Kameda, Yuichi, Kimura, Kazuki, Chiba, Satoshi

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.03 MB

english, 2014

22

Cryptic diversity and population genetic structure in the rare, endemic, forest-obligate, slender geckos of the Philippines

Siler, Cameron D., Alex Dececchi, T., Merkord, Chris L., Davis, Drew R., Christiani, Tony J., Brown, Rafe M.

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.41 MB

english, 2014

23

The intraspecific genetic variability of siliceous and calcareous Gentiana species is shaped by contrasting demographic and re-colonization processes

Christe, C., Caetano, S., Aeschimann, D., Kropf, M., Diadema, K., Naciri, Y.

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 2.33 MB

english, 2014

24

Resolving deep lineage divergences in core corvoid passerine birds supports a proto-Papuan island origin

Aggerbeck, Marie, Fjeldså, Jon, Christidis, Les, Fabre, Pierre-Henri, Jønsson, Knud Andreas

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 11.57 MB

english, 2014

25

The first molecular phylogeny of Chilodontidae (Teleostei: Ostariophysi: Characiformes) reveals cryptic biodiversity and taxonomic uncertainty

Melo, Bruno F., Sidlauskas, Brian L., Hoekzema, Kendra, Vari, Richard P., Oliveira, Claudio

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 2.32 MB

english, 2014

26

Multilocus phylogeny of talpine moles (Talpini, Talpidae, Eulipotyphla) and its implications for systematics

He, Kai, Shinohara, Akio, Jiang, Xue-Long, Campbell, Kevin L.

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.39 MB

english, 2014

27

Multilocus analysis of intraspecific differentiation in three endemic bird species from the northern Neotropical dry forest

Arbeláez-Cortés, Enrique, Milá, Borja, Navarro-Sigüenza, Adolfo G.

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.26 MB

english, 2014

28

Further insights into the phylogeny of two ciliate classes Nassophorea and Prostomatea (Protista, Ciliophora)

Zhang, Qianqian, Yi, Zhenzhen, Fan, Xinpeng, Warren, Alan, Gong, Jun, Song, Weibo

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 2.61 MB

english, 2014

29

New Sicydiinae phylogeny (Teleostei: Gobioidei) inferred from mitochondrial and nuclear genes: Insights on systematics and ancestral areas

Taillebois, Laura, Castelin, Magalie, Lord, Clara, Chabarria, Ryan, Dettaï, Agnès, Keith, Philippe

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 4.77 MB

english, 2014

30

Dinoflagellate phylogeny revisited: Using ribosomal proteins to resolve deep branching dinoflagellate clades

Bachvaroff, Tsvetan R., Gornik, Sebastian G., Concepcion, Gregory T., Waller, Ross F., Mendez, Gregory S., Lippmeier, J. Casey, Delwiche, Charles F.

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 772 KB

english, 2014

31

The origin of the early differentiation of Ivies (Hedera L.) and the radiation of the Asian Palmate group (Araliaceae)

Valcárcel, Virginia, Fiz-Palacios, Omar, Wen, Jun

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.93 MB

english, 2014

32

Convergent evolution of ecomorphological adaptations in geographically isolated Bay gobies (Teleostei: Gobionellidae) of the temperate North Pacific

Ellingson, Ryan A., Swift, Camm C., Findley, Lloyd T., Jacobs, David K.

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 2.03 MB

english, 2014

33

Nuclear and plastid markers reveal the persistence of genetic identity: A new perspective on the evolutionary history of Petunia exserta

Segatto, Ana Lúcia Anversa, Cazé, Ana Luíza Ramos, Turchetto, Caroline, Klahre, Ulrich, Kuhlemeier, Cris, Bonatto, Sandro Luis, Freitas, Loreta Brandão

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.58 MB

english, 2014

34

Phylogenetic position of the enigmatic clawless eutardigrade genus Apodibius Dastych, 1983 (Tardigrada), based on 18S and 28S rRNA sequence data from its type species A. confusus

Dabert, Miroslawa, Dastych, Hieronymus, Hohberg, Karin, Dabert, Jacek

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.21 MB

english, 2014

35

The reticulate evolutionary history of the polyploid NW Iberian Leucanthemum pluriflorum clan (Compositae, Anthemideae) as inferred from nrDNA ETS sequence diversity and eco-climatological niche-modelling

Oberprieler, Christoph, Greiner, Roland, Konowalik, Kamil, Vogt, Robert

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 3.02 MB

english, 2014

36

Evolution of glucose utilization: Glucokinase and glucokinase regulator protein

Irwin, David M., Tan, Huanran

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 487 KB

english, 2014

37

A molecular and morphological exploration of the generic boundaries in the family Melithaeidae (Coelenterata: Octocorallia) and its taxonomic consequences

Reijnen, Bastian T., McFadden, Catherine S., Hermanlimianto, Yosephine T., van Ofwegen, Leendert P.

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 3.18 MB

english, 2014

38

A nuclear DNA based phylogeny of endemic sand dune ants of the genus Mycetophylax (Emery, 1913): How morphology is reflected in molecular data

Cardoso, Danon Clemes, Cristiano, Maykon Passos, Heinze, Jürgen, Tavares, Mara Garcia

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 954 KB

english, 2014

39

Phylogenetic relationships of North American western chubs of the genus Gila (Cyprinidae, Teleostei), with emphasis on southern species

Schönhuth, Susana, Perdices, Anabel, Lozano-Vilano, Lourdes, García-de-León, Francisco J., Espinosa, Héctor, Mayden, Richard L.

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 4.38 MB

english, 2014

40

Phylogenomic analyses support the bifurcation of ciliates into two major clades that differ in properties of nuclear division

Gao, Feng, Katz, Laura A.

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 801 KB

english, 2014

41

Three-gene based phylogeny of the Urostyloidea (Protista, Ciliophora, Hypotricha), with notes on classification of some core taxa

Huang, Jie, Chen, Zigui, Song, Weibo, Berger, Helmut

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 2.89 MB

english, 2014

42

CO2: Editorial Board

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 33 KB

english, 2014

43

Molecular phylogeny reveals independent origins of body scales in Entomobryidae (Hexapoda: Collembola)

Zhang, Feng, Chen, Zhen, Dong, Rui-Rui, Deharveng, Louis, Stevens, Mark I., Huang, Ya-Hong, Zhu, Chao-Dong

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.43 MB

english, 2014

44

Sequence variability of the MspI satellite DNA family of the pinewood nematode Bursaphelenchus xylophilus at different geographic scales

Vieira, Paulo, Castagnone, Chantal, Mallez, Sophie, Espada, Margarida, Navas, Alfonso, Mota, Manuel, Castagnone-Sereno, Philippe

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 995 KB

english, 2014

45

Diversification of Scrophularia (Scrophulariaceae) in the Western Mediterranean and Macaronesia – Phylogenetic relationships, reticulate evolution and biogeographic patterns

Scheunert, Agnes, Heubl, Günther

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.52 MB

english, 2014

46

Evolutionary diversification and speciation in rodents of the Mexican lowlands: The Peromyscus melanophrys species group

Castañeda-Rico, Susette, León-Paniagua, Livia, Vázquez-Domínguez, Ella, Navarro-Sigüenza, Adolfo G.

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.50 MB

english, 2014

47

Miocene–Pliocene speciation, introgression, and migration of Patis and Ptilagrostis (Poaceae: Stipeae)

Romaschenko, Konstantin, Garcia-Jacas, Nuria, Peterson, Paul M., Soreng, Robert J., Vilatersana, Roser, Susanna, Alfonso

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 2.18 MB

english, 2014

48

Phylogenetic relationships and genome divergence among the AA- genome species of the genus Oryza as revealed by 53 nuclear genes and 16 intergenic regions

Zhu, Ting, Xu, Ping-Zhen, Liu, Jiang-Peng, Peng, Sheng, Mo, Xin-Chun, Gao, Li-Zhi

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.48 MB

english, 2014

49

Taxonomic placement of Paphiopedilum canhii (Cypripedioideae; Orchidaceae) based on cytological, molecular and micromorphological evidence

Górniak, Marcin, Szlachetko, Dariusz L., Kowalkowska, Agnieszka K., Bohdanowicz, Jerzy, Canh, Chu Xuan

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 5.42 MB

english, 2014

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