Volume 11; Issue 9

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Nature Methods
Volume 11; Issue 9

Nature Methods

Volume 11; Issue 9

1

RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP)

Siegfried, Nathan A, Busan, Steven, Rice, Greggory M, Nelson, Julie A E, Weeks, Kevin M

Journal:

Year:

2014

Language:

english

File:

PDF, 2.01 MB

english, 2014

2

High-resolution reconstruction of the beating zebrafish heart

Mickoleit, Michaela, Schmid, Benjamin, Weber, Michael, Fahrbach, Florian O, Hombach, Sonja, Reischauer, Sven, Huisken, Jan

Journal:

Year:

2014

Language:

english

File:

PDF, 1.33 MB

english, 2014

3

Mapping brain activity at scale with cluster computing

Freeman, Jeremy, Vladimirov, Nikita, Kawashima, Takashi, Mu, Yu, Sofroniew, Nicholas J, Bennett, Davis V, Rosen, Joshua, Yang, Chao-Tsung, Looger, Loren L, Ahrens, Misha B

Journal:

Year:

2014

Language:

english

File:

PDF, 1.99 MB

english, 2014

4

Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data

Amat, Fernando, Lemon, William, Mossing, Daniel P, McDole, Katie, Wan, Yinan, Branson, Kristin, Myers, Eugene W, Keller, Philipp J

Journal:

Year:

2014

Language:

english

File:

PDF, 2.55 MB

english, 2014

5

Light-sheet functional imaging in fictively behaving zebrafish

Vladimirov, Nikita, Mu, Yu, Kawashima, Takashi, Bennett, Davis V, Yang, Chao-Tsung, Looger, Loren L, Keller, Philipp J, Freeman, Jeremy, Ahrens, Misha B

Journal:

Year:

2014

Language:

english

File:

PDF, 704 KB

english, 2014

6

Epiviz: interactive visual analytics for functional genomics data

Chelaru, Florin, Smith, Llewellyn, Goldstein, Naomi, Bravo, Héctor Corrada

Journal:

Year:

2014

Language:

english

File:

PDF, 499 KB

english, 2014

7

Efficient CRISPR-Cas9–mediated genome editing in Plasmodium falciparum

Wagner, Jeffrey C, Platt, Randall J, Goldfless, Stephen J, Zhang, Feng, Niles, Jacquin C

Journal:

Year:

2014

Language:

english

File:

PDF, 643 KB

english, 2014

8

Nanoscale high-content analysis using compositional heterogeneities of single proteoliposomes

Mathiasen, Signe, Christensen, Sune M, Fung, Juan José, Rasmussen, Søren G F, Fay, Jonathan F, Jorgensen, Sune K, Veshaguri, Salome, Farrens, David L, Kiskowski, Maria, Kobilka, Brian, Stamou, Dimitri

Journal:

Year:

2014

Language:

english

File:

PDF, 749 KB

english, 2014

9

Visualizing a protein quake with time-resolved X-ray scattering at a free-electron laser

Arnlund, David, Johansson, Linda C, Wickstrand, Cecilia, Barty, Anton, Williams, Garth J, Malmerberg, Erik, Davidsson, Jan, Milathianaki, Despina, DePonte, Daniel P, Shoeman, Robert L, Wang, Dingjie,

Journal:

Year:

2014

Language:

english

File:

PDF, 787 KB

english, 2014

10

A critique of methods for temperature imaging in single cells

Baffou, Guillaume, Rigneault, Hervé, Marguet, Didier, Jullien, Ludovic

Journal:

Year:

2014

Language:

english

File:

PDF, 740 KB

english, 2014

11

Synthetic biology: A protein code to target RNA

Journal:

Year:

2014

Language:

english

File:

PDF, 177 KB

english, 2014

12

Improved reproducibility by assuring confidence in measurements in biomedical research

Plant, Anne L, Locascio, Laurie E, May, Willie E, Gallagher, Patrick D

Journal:

Year:

2014

Language:

english

File:

PDF, 147 KB

english, 2014

13

Analyzing neural data at huge scale

Cunningham, John P

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Year:

2014

Language:

english

File:

PDF, 717 KB

english, 2014

14

Points of Significance: Replication

Blainey, Paul, Krzywinski, Martin, Altman, Naomi

Journal:

Year:

2014

Language:

english

File:

PDF, 278 KB

english, 2014

15

Guided visual exploration of genomic stratifications in cancer

Streit, Marc, Lex, Alexander, Gratzl, Samuel, Partl, Christian, Schmalstieg, Dieter, Pfister, Hanspeter, Park, Peter J, Gehlenborg, Nils

Journal:

Year:

2014

Language:

english

File:

PDF, 359 KB

english, 2014

16

Biochemistry: Unraveling the lncRNA mystery

Journal:

Year:

2014

Language:

english

File:

PDF, 104 KB

english, 2014

17

Genetics: Identifying genetic barriers to reprogramming

Journal:

Year:

2014

Language:

english

File:

PDF, 86 KB

english, 2014

18

Neuroscience: Optical inhibition in red

Journal:

Year:

2014

Language:

english

File:

PDF, 177 KB

english, 2014

19

Microbiology: Another hit to the gut microbiome

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Year:

2014

Language:

english

File:

PDF, 86 KB

english, 2014

20

Phen-Gen: combining phenotype and genotype to analyze rare disorders

Javed, Asif, Agrawal, Saloni, Ng, Pauline C

Journal:

Year:

2014

Language:

english

File:

PDF, 345 KB

english, 2014

21

The measure of reproducibility

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Year:

2014

Language:

english

File:

PDF, 90 KB

english, 2014

22

Genomics: Nanopores read long genomic DNA

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Year:

2014

Language:

english

File:

PDF, 237 KB

english, 2014

23

Cell biology: Intracellular topology

Journal:

Year:

2014

Language:

english

File:

PDF, 86 KB

english, 2014

24

Change at Nature Methods

Journal:

Year:

2014

Language:

english

File:

PDF, 90 KB

english, 2014

25

Structural biology: 'seeing' crystals the XFEL way

Journal:

Year:

2014

Language:

english

File:

PDF, 2.94 MB

english, 2014

26

Gene expression: Following transcription in real time

Journal:

Year:

2014

Language:

english

File:

PDF, 86 KB

english, 2014

27

Isolation of rare recombinants without using selectable markers for one-step seamless BAC mutagenesis

Lyozin, George T, Bressloff, Paul C, Kumar, Amit, Kosaka, Yasuhiro, Demarest, Bradley L, Yost, H Joseph, Kuehn, Michael R, Brunelli, Luca

Journal:

Year:

2014

Language:

english

File:

PDF, 907 KB

english, 2014

28

Stem cells: Abnormalities during reprogramming

Journal:

Year:

2014

Language:

english

File:

PDF, 86 KB

english, 2014

29

Genetics: Hitting the mark

Eisenstein, Michael

Journal:

Year:

2014

Language:

english

File:

PDF, 108 KB

english, 2014

30

Corrigendum: Fluorophore localization algorithms for super-resolution microscopy

Small, Alex, Stahlheber, Shane

Journal:

Year:

2014

Language:

english

File:

PDF, 112 KB

english, 2014

31

High-resolution structure determination by continuous-rotation data collection in MicroED

Nannenga, Brent L, Shi, Dan, Leslie, Andrew G W, Gonen, Tamir

Journal:

Year:

2014

Language:

english

File:

PDF, 1.32 MB

english, 2014

32

Corrigendum: Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study

Mestdagh, Pieter, Hartmann, Nicole, Baeriswyl, Lukas, Andreasen, Ditte, Bernard, Nathalie, Chen, Caifu, Cheo, David, D'Andrade, Petula, DeMayo, Mike, Dennis, Lucas, Derveaux, Stefaan, Feng, Yun, Fulme

Journal:

Year:

2014

Language:

english

File:

PDF, 114 KB

english, 2014

33

Addendum: Independent optical excitation of distinct neural populations

Klapoetke, Nathan C, Murata, Yasunobu, Kim, Sung Soo, Pulver, Stefan R, Birdsey-Benson, Amanda, Cho, Yong Ku, Morimoto, Tania K, Chuong, Amy S, Carpenter, Eric J, Tian, Zhijian, Wang, Jun, Xie, Yinlon

Journal:

Year:

2014

Language:

english

File:

PDF, 345 KB

english, 2014

34

The Author File: Richard Neutze

Journal:

Year:

2014

Language:

english

File:

PDF, 169 KB

english, 2014

35

Lab-on-a-chip: Myelination in arrays

Journal:

Year:

2014

Language:

english

File:

PDF, 86 KB

english, 2014

36

Corrigendum: Independent optical excitation of distinct neural populations

Klapoetke, Nathan C, Murata, Yasunobu, Kim, Sung Soo, Pulver, Stefan R, Birdsey-Benson, Amanda, Cho, Yong Ku, Morimoto, Tania K, Chuong, Amy S, Carpenter, Eric J, Tian, Zhijian, Wang, Jun, Xie, Yinlon

Journal:

Year:

2014

Language:

english

File:

PDF, 113 KB

english, 2014

37

Corrigendum: A holidic medium for Drosophila melanogaster

Piper, Matthew D W, Blanc, Eric, Leitão-Gonçalves, Ricardo, Yang, Mingyao, He, Xiaoli, Linford, Nancy J, Hoddinott, Matthew P, Hopfen, Corinna, Soultoukis, George A, Niemeyer, Christine, Kerr, Fiona,

Journal:

Year:

2014

Language:

english

File:

PDF, 113 KB

english, 2014

38

Neuroscience: Pinpointing postsynaptic partners

Journal:

Year:

2014

Language:

english

File:

PDF, 86 KB

english, 2014

39

Sensors and probes: Watching auxin make its move

Journal:

Year:

2014

Language:

english

File:

PDF, 86 KB

english, 2014

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