Volume 14; Issue 4

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Nature Methods
Volume 14; Issue 4

Nature Methods

Volume 14; Issue 4

1

Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED

de la Cruz, M Jason, Hattne, Johan, Shi, Dan, Seidler, Paul, Rodriguez, Jose, Reyes, Francis E, Sawaya, Michael R, Cascio, Duilio, Weiss, Simon C, Kim, Sun Kyung, Hinck, Cynthia S, Hinck, Andrew P, Ca

Journal:

Year:

2017

Language:

english

File:

PDF, 2.17 MB

english, 2017

2

Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput

Gierahn, Todd M, Wadsworth, Marc H, Hughes, Travis K, Bryson, Bryan D, Butler, Andrew, Satija, Rahul, Fortune, Sarah, Love, J Christopher, Shalek, Alex K

Journal:

Year:

2017

Language:

english

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PDF, 3.95 MB

english, 2017

3

Prospective identification of hematopoietic lineage choice by deep learning

Buggenthin, Felix, Buettner, Florian, Hoppe, Philipp S, Endele, Max, Kroiss, Manuel, Strasser, Michael, Schwarzfischer, Michael, Loeffler, Dirk, Kokkaliaris, Konstantinos D, Hilsenbeck, Oliver, Schroe

Journal:

Year:

2017

Language:

english

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PDF, 1.01 MB

english, 2017

4

In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain

Ouzounov, Dimitre G, Wang, Tianyu, Wang, Mengran, Feng, Danielle D, Horton, Nicholas G, Cruz-Hernández, Jean C, Cheng, Yu-Ting, Reimer, Jacob, Tolias, Andreas S, Nishimura, Nozomi, Xu, Chris

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Year:

2017

Language:

english

File:

PDF, 931 KB

english, 2017

5

Detecting DNA cytosine methylation using nanopore sequencing

Simpson, Jared T, Workman, Rachael E, Zuzarte, P C, David, Matei, Dursi, L J, Timp, Winston

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Year:

2017

Language:

english

File:

PDF, 1.81 MB

english, 2017

6

Mapping DNA methylation with high-throughput nanopore sequencing

Rand, Arthur C, Jain, Miten, Eizenga, Jordan M, Musselman-Brown, Audrey, Olsen, Hugh E, Akeson, Mark, Paten, Benedict

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Year:

2017

Language:

english

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PDF, 2.02 MB

english, 2017

7

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

Zheng, Shawn Q, Palovcak, Eugene, Armache, Jean-Paul, Verba, Kliment A, Cheng, Yifan, Agard, David A

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Year:

2017

Language:

english

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PDF, 674 KB

english, 2017

8

Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers

Fuller, Franklin D, Gul, Sheraz, Chatterjee, Ruchira, Burgie, E Sethe, Young, Iris D, Lebrette, Hugo, Srinivas, Vivek, Brewster, Aaron S, Michels-Clark, Tara, Clinger, Jonathan A, Andi, Babak, Ibrahim

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Year:

2017

Language:

english

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PDF, 1.86 MB

english, 2017

9

Automated synaptic connectivity inference for volume electron microscopy

Dorkenwald, Sven, Schubert, Philipp J, Killinger, Marius F, Urban, Gregor, Mikula, Shawn, Svara, Fabian, Kornfeld, Joergen

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Year:

2017

Language:

english

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PDF, 3.35 MB

english, 2017

10

Salmon provides fast and bias-aware quantification of transcript expression

Patro, Rob, Duggal, Geet, Love, Michael I, Irizarry, Rafael A, Kingsford, Carl

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Year:

2017

Language:

english

File:

PDF, 569 KB

english, 2017

11

Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning

Wang, Bo, Zhu, Junjie, Pierson, Emma, Ramazzotti, Daniele, Batzoglou, Serafim

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Year:

2017

Language:

english

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PDF, 4.40 MB

english, 2017

12

Power analysis of single-cell RNA-sequencing experiments

Svensson, Valentine, Natarajan, Kedar Nath, Ly, Lam-Ha, Miragaia, Ricardo J, Labalette, Charlotte, Macaulay, Iain C, Cvejic, Ana, Teichmann, Sarah A

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Year:

2017

Language:

english

File:

PDF, 1.43 MB

english, 2017

13

Genetically encoded biosensors for visualizing live-cell biochemical activity at super-resolution

Mo, Gary C H, Ross, Brian, Hertel, Fabian, Manna, Premashis, Yang, Xinxing, Greenwald, Eric, Booth, Chris, Plummer, Ashlee M, Tenner, Brian, Chen, Zan, Wang, Yuxiao, Kennedy, Eileen J, Cole, Philip A,

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Year:

2017

Language:

english

File:

PDF, 4.43 MB

english, 2017

14

Optogenetic control with a photocleavable protein, PhoCl

Zhang, Wei, Lohman, Alexander W, Zhuravlova, Yevgeniya, Lu, Xiaocen, Wiens, Matthew D, Hoi, Hiofan, Yaganoglu, Sine, Mohr, Manuel A, Kitova, Elena N, Klassen, John S, Pantazis, Periklis, Thompson, Rog

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Year:

2017

Language:

english

File:

PDF, 1.61 MB

english, 2017

15

A genetic system to study Plasmodium falciparum protein function

Birnbaum, Jakob, Flemming, Sven, Reichard, Nick, Soares, Alexandra Blancke, Mesén-Ramírez, Paolo, Jonscher, Ernst, Bergmann, Bärbel, Spielmann, Tobias

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Year:

2017

Language:

english

File:

PDF, 1.68 MB

english, 2017

16

Volumetric two-photon imaging of neurons using stereoscopy (vTwINS)

Song, Alexander, Charles, Adam S, Koay, Sue Ann, Gauthier, Jeff L, Thiberge, Stephan Y, Pillow, Jonathan W, Tank, David W

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2017

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english

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PDF, 3.00 MB

english, 2017

17

Adaptive optical fluorescence microscopy

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Year:

2017

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english

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PDF, 881 KB

english, 2017

18

A guide to light-sheet fluorescence microscopy for multiscale imaging

Power, Rory M, Huisken, Jan

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Year:

2017

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english

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PDF, 2.03 MB

english, 2017

19

In vivo imaging of neural activity

Yang, Weijian, Yuste, Rafael

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2017

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english

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PDF, 4.83 MB

english, 2017

20

The Author File: Chris Xu

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2017

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english

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PDF, 176 KB

english, 2017

21

Choosing CRISPR-based screens in cancer

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2017

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english

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PDF, 915 KB

english, 2017

22

Automatic tracing of ultra-volumes of neuronal images

Peng, Hanchuan, Zhou, Zhi, Meijering, Erik, Zhao, Ting, Ascoli, Giorgio A, Hawrylycz, Michael

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Year:

2017

Language:

english

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PDF, 985 KB

english, 2017

23

Points of Significance: Tabular data

Altman, Naomi, Krzywinski, Martin

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2017

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english

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PDF, 124 KB

english, 2017

24

Nanopore sequencing meets epigenetics

Schatz, Michael C

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2017

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english

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PDF, 1.29 MB

english, 2017

25

Microscopy: STED with twice the depletion

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2017

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english

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PDF, 46 KB

english, 2017

26

Microscopy: Imaging fast subcellular dynamics with light sheets

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2017

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english

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PDF, 46 KB

english, 2017

27

Chemical biology: A method for labeling methionines

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2017

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english

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PDF, 46 KB

english, 2017

28

Gene expression: One mouse to trap them all

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2017

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english

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PDF, 46 KB

english, 2017

29

Bioinformatics: Genome scaffolding while you sequence

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2017

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english

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PDF, 46 KB

english, 2017

30

Neuroscience: Connectomics at the single-cell level

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2017

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english

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PDF, 270 KB

english, 2017

31

Sensors and probes: A magnetic alternative to FRET

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2017

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english

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PDF, 217 KB

english, 2017

32

Genomics: SLICE-ing a genome's architecture

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2017

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english

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PDF, 217 KB

english, 2017

33

Genetics: DNA variants or DNA damage?

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2017

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english

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PDF, 65 KB

english, 2017

34

Chemistry: Solution-state 13C NMR gets a boost

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2017

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english

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PDF, 46 KB

english, 2017

35

Neuroscience: Optogenetic feedback in real time

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2017

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english

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PDF, 46 KB

english, 2017

36

Genomics: Single-base editing

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2017

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english

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PDF, 46 KB

english, 2017

37

Imaging: Volumetric functional imaging two ways

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2017

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english

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PDF, 67 KB

english, 2017

38

Imaging beyond the coverslip

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Year:

2017

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english

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PDF, 58 KB

english, 2017