Volume 28; Issue 1

Nucleic Acids Research

Volume 28; Issue 1
1

KEGG: Kyoto Encyclopedia of Genes and Genomes

Kanehisa, M.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 116 KB
english, 2000
2

The Pfam Protein Families Database

Bateman, A.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 489 KB
english, 2000
3

TRANSFAC: an integrated system for gene expression regulation

Wingender, E.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 109 KB
english, 2000
4

ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons

Corpet, F.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 99 KB
english, 2000
5

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000

Bairoch, A.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 82 KB
english, 2000
6

Kabat Database and its applications: 30 years after the first variability plot

Johnson, G.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 143 KB
english, 2000
7

The COG database: a tool for genome-scale analysis of protein functions and evolution

Tatusov, R. L.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 273 KB
english, 2000
8

The Protein Data Bank

Berman, H. M.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 435 KB
english, 2000
9

EcoGene: a genome sequence database for Escherichia coli K-12

Rudd, K. E.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 533 KB
english, 2000
10

Database resources of the National Center for Biotechnology Information

Wheeler, D. L.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 289 KB
english, 2000
11

EID: the Exon-Intron Database--an exhaustive database of protein-coding intron-containing genes

Saxonov, S.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 276 KB
english, 2000
12

FIMM, a database of functional molecular immunology

Schonbach, C.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 103 KB
english, 2000
13

WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction

Overbeek, R.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 93 KB
english, 2000
14

The ENZYME database in 2000

Bairoch, A.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 51 KB
english, 2000
15

DIP: the Database of Interacting Proteins

Xenarios, I.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 112 KB
english, 2000
16

PseudoBase: a database with RNA pseudoknots

van Batenburg, F. H. D.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 676 KB
english, 2000
17

Integrating functional genomic information into the Saccharomyces Genome Database

Ball, C. A.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 989 KB
english, 2000
18

GenBank

Benson, D. A.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 90 KB
english, 2000
19

HOX Pro: a specialized database for clusters and networks of homeobox genes

Spirov, A. V.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 105 KB
english, 2000
20

PLMItRNA, a database for tRNAs and tRNA genes in plant mitochondria: enlargement and updating

Volpetti, V.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 483 KB
english, 2000
21

The TIGR Gene Indices: reconstruction and representation of expressed gene sequences

Quackenbush, J.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 455 KB
english, 2000
23

ProTherm, version 2.0: thermodynamic database for proteins and mutants

Gromiha, M. M.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 595 KB
english, 2000
24

ALFRED: an allele frequency database for diverse populations and DNA polymorphisms

Cheung, K.-H.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 59 KB
english, 2000
25

Atlas of Genetics and Cytogenetics in Oncology and Haematology, an Interactive Database

Huret, J.-L.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 68 KB
english, 2000
26

Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence Database

Shafer, R. W.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 518 KB
english, 2000
27

The SYSTERS protein sequence cluster set

Krause, A.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 200 KB
english, 2000
30

PRINTS-S: the database formerly known as PRINTS

Attwood, T. K.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 116 KB
english, 2000
31

SMART: a web-based tool for the study of genetically mobile domains

Schultz, J.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 348 KB
english, 2000
32

Assigning genomic sequences to CATH

Pearl, F. M. G.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 710 KB
english, 2000
33

Editorial

Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 4 KB
english, 2000
34

AAindex: Amino Acid index database

Kawashima, S.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 32 KB
english, 2000
35

Transterm: a database of messenger RNA components and signals

Jacobs, G. H.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 87 KB
english, 2000
36

MITOP, the mitochondrial proteome database: 2000 update

Scharfe, C.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 168 KB
english, 2000
37

The SBASE protein domain library, release 7.0: a collection of annotated protein sequence segments

Murvai, J.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 137 KB
english, 2000
38

IMGT, the international ImMunoGeneTics database

Ruiz, M.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 497 KB
english, 2000
39

BodyMap: a human and mouse gene expression database

Hishiki, T.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 178 KB
english, 2000
40

The Eukaryotic Promoter Database (EPD)

Perier, R. C.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 73 KB
english, 2000
41

The Protein Information Resource (PIR)

Barker, W. C.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 102 KB
english, 2000
42

The 1999 SWISS-2DPAGE database update

Hoogland, C.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 328 KB
english, 2000
43

DBcat: a catalog of 500 biological databases

Discala, C.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 57 KB
english, 2000
44

ExInt: an Exon/Intron database

Sakharkar, M.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 41 KB
english, 2000
45

The Homeodomain Resource: a prototype database for a large protein family

Banerjee-Basu, S.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 385 KB
english, 2000
46

GXD: a Gene Expression Database for the laboratory mouse: current status and recent enhancements

Ringwald, M.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 953 KB
english, 2000
47

Aminoacyl-tRNA synthetases database Y2K

Szymanski, M.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 100 KB
english, 2000
48

The IDB and IEDB: intron sequence and evolution databases

Schisler, N. J.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 282 KB
english, 2000
49

5S ribosomal RNA database Y2K

Szymanski, M.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 91 KB
english, 2000
50

MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins

Pesole, G.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 85 KB
english, 2000
51

REBASE - restriction enzymes and methylases

Roberts, R. J.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 183 KB
english, 2000
52

SRPDB (Signal Recognition Particle Database)

Zwieb, C.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 58 KB
english, 2000
53

Update of KEYnet: a gene and protein names database for biosequences functional organisation

Catalano, D.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 45 KB
english, 2000
54

The Genome Sequence DataBase

Harger, C.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 53 KB
english, 2000
55

MitBASE : a comprehensive and integrated mitochondrial DNA database. The present status

Attimonelli, M.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 122 KB
english, 2000
57

HGBASE: a database of SNPs and other variations in and around human genes

Brookes, A. J.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 93 KB
english, 2000
58

The Prostate Expression Database (PEDB): status and enhancements in 2000

Nelson, P. S.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 74 KB
english, 2000
59

Increased coverage of protein families with the Blocks Database servers

Henikoff, J. G.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 232 KB
english, 2000
60

Object-oriented Transcription Factors Database (ooTFD)

Ghosh, D.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 71 KB
english, 2000
61

The Intronerator: exploring introns and alternative splicing in Caenorhabditis elegans

Kent, W. J.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 718 KB
english, 2000
62

UK CropNet: a collection of databases and bioinformatics resources for crop plant genomics

Dicks, J.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 813 KB
english, 2000
63

Keio Mutation Database (KMDB) for human disease gene mutations

Minoshima, S.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 1.88 MB
english, 2000
64

Database of non-canonical base pairs found in known RNA structures

Nagaswamy, U.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 42 KB
english, 2000
65

dbSNP: a database of single nucleotide polymorphisms

Smigielski, E. M.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 220 KB
english, 2000
66

Codon usage tabulated from international DNA sequence databases: status for the year 2000

Nakamura, Y.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 26 KB
english, 2000
67

CyanoBase, the genome database for Synechocystis sp. strain PCC6803: status for the year 2000

Nakamura, Y.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 27 KB
english, 2000
68

ASDB: database of alternatively spliced genes

Dralyuk, I.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 120 KB
english, 2000
69

The tmRNA Website

Williams, K. P.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 27 KB
english, 2000
70

Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences

Lanave, C.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 54 KB
english, 2000
71

tmRDB (tmRNA database)

Zwieb, C.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 56 KB
english, 2000
72

Mouse Tumor Biology Database (MTB): enhancements and current status

Bult, C. J.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 56 KB
english, 2000
74

EMGLib: the Enhanced Microbial Genomes Library (update 2000)

Perriere, G.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 611 KB
english, 2000
75

SENTRA, a database of signal transduction proteins

D'Souza, M.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 56 KB
english, 2000
76

MIPS: a database for genomes and protein sequences

Mewes, H. W.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 84 KB
english, 2000
77

MODBASE, a database of annotated comparative protein structure models

Sanchez, R.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 749 KB
english, 2000
78

The EcoCyc and MetaCyc databases

Karp, P. D.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 141 KB
english, 2000
80

MEROPS: the peptidase database

Rawlings, N. D.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 84 KB
english, 2000
81

SCOP: a Structural Classification of Proteins database

Lo Conte, L.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 67 KB
english, 2000
82

INE: a rice genome database with an integrated map view

Sakata, K.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 461 KB
english, 2000
83

The RESID Database of protein structure modifications: 2000 update

Garavelli, J. S.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 119 KB
english, 2000
84

DNA Data Bank of Japan (DDBJ) in collaboration with mass sequencing teams

Tateno, Y.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 248 KB
english, 2000
85

HUGE: a database for human large proteins identified in the Kazusa cDNA sequencing project

Kikuno, R.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 54 KB
english, 2000
87

KinMutBase, a database of human disease-causing protein kinase mutations

Stenberg, K. A. E.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 119 KB
english, 2000
88

InBase, the Intein Database

Perler, F. B.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 74 KB
english, 2000
89

ProtoMap: automatic classification of protein sequences and hierarchy of protein families

Yona, G.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 1.78 MB
english, 2000
90

DAtA: Database of Arabidopsis thaliana Annotation

Palm, C. J.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 60 KB
english, 2000
91

TRIPLES: a database of gene function in Saccharomyces cerevisiae

Kumar, A.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 90 KB
english, 2000
92

NCBI's LocusLink and RefSeq

Maglott, D. R.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 77 KB
english, 2000
95

The European Large Subunit Ribosomal RNA database

De Rijk, P.
Journal:
Nucleic Acids Research
Year:
2000
File:
PDF, 50 KB
2000
96

Gene discovery using the maize genome database ZmDB

Gai, X.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 142 KB
english, 2000
97

Non-coding, mRNA-like RNAs database Y2K

Erdmann, V. A.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 131 KB
english, 2000
99

ProClass protein family database

Huang, H.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 104 KB
english, 2000
100

The Mouse Genome Database (MGD): expanding genetic and genomic resources for the laboratory mouse

Blake, J. A.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 88 KB
english, 2000
101

The European Large Subunit Ribosomal RNA database

De Rijk, P.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 50 KB
english, 2000
102

Human BAC Ends

Zhao, S.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 115 KB
english, 2000
103

The IMB Jena Image Library of Biological Macromolecules

Reichert, J.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 115 KB
english, 2000
104

The RDP (Ribosomal Database Project) continues

Maidak, B. L.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 54 KB
english, 2000
105

The database of the smallest known auto-replicable RNA species: viroids and viroid-like RNAs

Pelchat, M.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 31 KB
english, 2000
106

Olfactory Receptor Database: a sensory chemoreceptor resource

Skoufos, E.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 633 KB
english, 2000
107

Axeldb: a Xenopus laevis database focusing on gene expression

Pollet, N.
Journal:
Nucleic Acids Research
Year:
2000
Language:
english
File:
PDF, 51 KB
english, 2000