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Volume 32; Issue 90001

Nucleic Acids Research

Volume 32; Issue 90001
1

The microRNA Registry

Griffiths-Jones, S.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 129 KB
english, 2004
2

SCOR: Structural Classification of RNA, version 2.0

Tamura, M.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 68 KB
english, 2004
3

ACLAME: A CLAssification of Mobile genetic Elements

Leplae, R.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 308 KB
english, 2004
4

The Pfam protein families database

Bateman, A.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 192 KB
english, 2004
5

MODBASE, a database of annotated comparative protein structure models, and associated resources

Pieper, U.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 268 KB
english, 2004
6

The SUPERFAMILY database in 2004: additions and improvements

Madera, M.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 219 KB
english, 2004
7

Recent improvements to the PROSITE database

Hulo, N.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 125 KB
english, 2004
8

GeneDB: a resource for prokaryotic and eukaryotic organisms

Hertz-Fowler, C.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 187 KB
english, 2004
9

The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models

Kopp, J.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 178 KB
english, 2004
10

The UCSC Table Browser data retrieval tool

Karolchik, D.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 113 KB
english, 2004
11

The Gene Ontology (GO) database and informatics resource

Gene Ontology Consortium,
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 118 KB
english, 2004
13

The Molecular Biology Database Collection: 2004 update

Galperin, M. Y.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 133 KB
english, 2004
14

Aptamer Database

Lee, J. F.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 291 KB
english, 2004
15

SCOP database in 2004: refinements integrate structure and sequence family data

Andreeva, A.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 57 KB
english, 2004
16

MetaCyc: a multiorganism database of metabolic pathways and enzymes

Krieger, C. J.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 186 KB
english, 2004
17

UniProt: the Universal Protein knowledgebase

Apweiler, R.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 65 KB
english, 2004
18

ANTIMIC: a database of antimicrobial sequences

Brahmachary, M.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 53 KB
english, 2004
19

SGMD: the Soybean Genomics and Microarray Database

Alkharouf, N. W.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 189 KB
english, 2004
20

CADRE: the Central Aspergillus Data REpository

Mabey, J. E.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 321 KB
english, 2004
21

The Eukaryotic Promoter Database EPD: the impact of in silico primer extension

Schmid, C. D.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 154 KB
english, 2004
23

Xpro: database of eukaryotic protein-encoding genes

Gopalan, V.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 352 KB
english, 2004
24

The EMBL Nucleotide Sequence Database

Kulikova, T.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 59 KB
english, 2004
25

Nematode.net: a tool for navigating sequences from parasitic and free-living nematodes

Wylie, T.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 167 KB
english, 2004
27

ESTHER, the database of the  / -hydrolase fold superfamily of proteins

Hotelier, T.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 51 KB
english, 2004
28

HUGE: a database for human KIAA proteins, a 2004 update integrating HUGEppi and ROUGE

Kikuno, R.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 50 KB
english, 2004
29

Human protein reference database as a discovery resource for proteomics

Peri, S.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 359 KB
english, 2004
30

APD: the Antimicrobial Peptide Database

Wang, Z.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 51 KB
english, 2004
31

BRENDA, the enzyme database: updates and major new developments

Schomburg, I.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 76 KB
english, 2004
32

RPG: the Ribosomal Protein Gene database

Nakao, A.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 121 KB
english, 2004
34

The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts

Gueneau de Novoa, P.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 96 KB
english, 2004
35

PlantGDB, plant genome database and analysis tools

Dong, Q.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 245 KB
english, 2004
36

IntAct: an open source molecular interaction database

Hermjakob, H.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 242 KB
english, 2004
38

trome, trEST and trGEN: databases of predicted protein sequences

Sperisen, P.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 51 KB
english, 2004
39

NEMBASE: a resource for parasitic nematode ESTs

Parkinson, J.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 186 KB
english, 2004
40

TcruziDB: an integrated Trypanosoma cruzi genome resource

Luchtan, M.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 145 KB
english, 2004
41

ERGDB: Estrogen Responsive Genes Database

Tang, S.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 141 KB
english, 2004
42

EDITORIAL

Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 22 KB
english, 2004
43

Update of NUREBASE: nuclear hormone receptor functional genomics

Ruau, D.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 48 KB
english, 2004
46

The Database of Interacting Proteins: 2004 update

Salwinski, L.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 86 KB
english, 2004
48

The Mouse SAGE Site: database of public mouse SAGE libraries

Divina, P.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 41 KB
english, 2004
50

CleanEx: a database of heterogeneous gene expression data based on a consistent gene nomenclature

Praz, V.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 367 KB
english, 2004
51

EyeSite: a semi-automated database of protein families in the eye

Lee, D. A.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 195 KB
english, 2004
52

TropGENE-DB, a multi-tropical crop information system

Ruiz, M.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 140 KB
english, 2004
53

HGVbase: a curated resource describing human DNA variation and phenotype relationships

Fredman, D.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 95 KB
english, 2004
54

EASED: Extended Alternatively Spliced EST Database

Pospisil, H.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 351 KB
english, 2004
55

Database resources of the National Center for Biotechnology Information: update

Wheeler, D. L.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 66 KB
english, 2004
56

Genolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts

Sherman, D.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 176 KB
english, 2004
57

The ORFanage: an ORFan database

Siew, N.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 44 KB
english, 2004
58

HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database

Stebbings, L. A.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 210 KB
english, 2004
59

ProTherm, version 4.0: thermodynamic database for proteins and mutants

Bava, K. A.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 74 KB
english, 2004
60

DBTSS, DataBase of Transcriptional Start Sites: progress report 2004

Suzuki, Y.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 248 KB
english, 2004
62

GermOnline, a cross-species community knowledgebase on germ cell differentiation

Wiederkehr, C.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 374 KB
english, 2004
63

GenBank: update

Benson, D. A.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 56 KB
english, 2004
65

The Rice PIPELINE: a unification tool for plant functional genomics

Yazaki, J.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 242 KB
english, 2004
66

The European ribosomal RNA database

Wuyts, J.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 146 KB
english, 2004
67

dictyBase: a new Dictyostelium discoideum genome database

Kreppel, L.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 42 KB
english, 2004
69

IMGT/GeneInfo: enhancing V(D)J recombination database accessibility

Baum, T.-P.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 216 KB
english, 2004
70

PIRSF: family classification system at the Protein Information Resource

Wu, C. H.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 47 KB
english, 2004
71

The aMAZE LightBench: a web interface to a relational database of cellular processes

Lemer, C.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 215 KB
english, 2004
73

RTCGD: retroviral tagged cancer gene database

Akagi, K.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 264 KB
english, 2004
74

The KEGG resource for deciphering the genome

Kanehisa, M.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 59 KB
english, 2004
75

EICO (Expression-based Imprint Candidate Organizer): finding disease-related imprinted genes

Nikaido, I.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 100 KB
english, 2004
77

MitoP2, an integrated database on mitochondrial proteins in yeast and man

Andreoli, C.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 196 KB
english, 2004
79

yMGV: a cross-species expression data mining tool

Lelandais, G.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 117 KB
english, 2004
80

KinG: a database of protein kinases in genomes

Krupa, A.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 63 KB
english, 2004
81

Flytrap, a database documenting a GFP protein-trap insertion screen in Drosophila melanogaster

Kelso, R. J.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 88 KB
english, 2004
82

TOPS: an enhanced database of protein structural topology

Michalopoulos, I.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 86 KB
english, 2004
83

DSDBASE: a consortium of native and modelled disulphide bonds in proteins

Vinayagam, A.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 48 KB
english, 2004
84

Pathbase: a database of mutant mouse pathology

Schofield, P. N.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 59 KB
english, 2004
85

The Mouse Genome Database (MGD): integrating biology with the genome

Bult, C. J.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 389 KB
english, 2004
86

DDBJ in the stream of various biological data

Miyazaki, S.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 126 KB
english, 2004
87

AluGene: a database of Alu elements incorporated within protein-coding genes

Dagan, T.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 103 KB
english, 2004
88

Genew: the Human Gene Nomenclature Database, 2004 updates

Wain, H. M.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 47 KB
english, 2004
89

MIPS: analysis and annotation of proteins from whole genomes

Mewes, H. W.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 98 KB
english, 2004
90

SCMD: Saccharomyces cerevisiae Morphological Database

Saito, T. L.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 160 KB
english, 2004
91

ASD: the Alternative Splicing Database

Thanaraj, T. A.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 237 KB
english, 2004
92

MEROPS: the peptidase database

Rawlings, N. D.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 321 KB
english, 2004
93

STCDB: Signal Transduction Classification Database

Chen, M.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 45 KB
english, 2004
95

ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites

Li, L.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 154 KB
english, 2004
96

The Unified Medical Language System (UMLS): integrating biomedical terminology

Bodenreider, O.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 151 KB
english, 2004
97

DomIns: a web resource for domain insertions in known protein structures

Selvam, R. A.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 179 KB
english, 2004
99

NASCArrays: a repository for microarray data generated by NASC's transcriptomics service

Craigon, D. J.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 130 KB
english, 2004
100

MaizeGDB, the community database for maize genetics and genomics

Lawrence, C. J.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 140 KB
english, 2004
101

Ensembl 2004

Birney, E.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 48 KB
english, 2004
102

PHYTOPROT: a database of clusters of plant proteins

Mohseni-Zadeh, S.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 127 KB
english, 2004
103

The mouse Gene Expression Database (GXD): updates and enhancements

Hill, D. P.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 57 KB
english, 2004
104

E-MSD: an integrated data resource for bioinformatics

Golovin, A.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 409 KB
english, 2004
107

FREP: a database of functional repeats in mouse cDNAs

Nagashima, T.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 188 KB
english, 2004
108

AANT: the Amino Acid-Nucleotide Interaction Database

Hoffman, M. M.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 205 KB
english, 2004
109

The KNOTTIN website and database: a new information system dedicated to the knottin scaffold

Gelly, J.-C.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 143 KB
english, 2004
110

FusionDB: a database for in-depth analysis of prokaryotic gene fusion events

Suhre, K.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 143 KB
english, 2004
111

VirGen: a comprehensive viral genome resource

Kulkarni-Kale, U.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 205 KB
english, 2004
112

The ASTRAL Compendium in 2004

Chandonia, J.-M.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 128 KB
english, 2004
113

SURFACE: a database of protein surface regions for functional annotation

Ferre, F.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 275 KB
english, 2004
114

GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins

Serres, M. H.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 68 KB
english, 2004
115

ArchDB: automated protein loop classification as a tool for structural genomics

Espadaler, J.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 185 KB
english, 2004
116

DEG: a database of essential genes

Zhang, R.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 39 KB
english, 2004
118

FLAGdb++: a database for the functional analysis of the Arabidopsis genome

Samson, F.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 280 KB
english, 2004
119

The distribution and query systems of the RCSB Protein Data Bank

Bourne, P. E.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 47 KB
english, 2004
122

The Centre for Modeling Human Disease Gene Trap resource

To, C.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 52 KB
english, 2004
123

WormBase: a multi-species resource for nematode biology and genomics

Harris, T. W.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 406 KB
english, 2004
124

THGS: a web-based database of Transmembrane Helices in Genome Sequences

Fernando, S. A.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 148 KB
english, 2004
125

CryptoDB: the Cryptosporidium genome resource

Puiu, D.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 151 KB
english, 2004
126

TrSDB: a proteome database of transcription factors

Hermoso, A.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 145 KB
english, 2004
128

MitoProteome: mitochondrial protein sequence database and annotation system

Cotter, D.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 126 KB
english, 2004
129

BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics

Zhao, W.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 354 KB
english, 2004
130

MolliGen, a database dedicated to the comparative genomics of Mollicutes

Barre, A.
Journal:
Nucleic Acids Research
Year:
2004
Language:
english
File:
PDF, 161 KB
english, 2004