Volume 33; Issue 15

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Nucleic Acids Research
Volume 33; Issue 15

Nucleic Acids Research

Volume 33; Issue 15

1

Limitations and potentials of current motif discovery algorithms

Hu, J., Li, B., Kihara, D.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 590 KB

english, 2005

2

Specific roles of 5' RNA secondary structures in stabilizing transcripts in chloroplasts

Suay, L., Salvador, M. L., Abesha, E., Klein, U.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 5.49 MB

english, 2005

3

Nucleotide modification at the -phosphate leads to the improved fidelity of HIV-1 reverse transcriptase

Mulder, B. A., Anaya, S., Yu, P., Lee, K. W., Nguyen, A., Murphy, J., Willson, R., Briggs, J. M., Gao, X., Hardin, S. H.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 2.35 MB

english, 2005

4

Isolation of a small molecule inhibitor of DNA base excision repair

Madhusudan, S., Smart, F., Shrimpton, P., Parsons, J. L., Gardiner, L., Houlbrook, S., Talbot, D. C., Hammonds, T., Freemont, P. A., Sternberg, M. J. E., Dianov, G. L., Hickson, I. D.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 2.34 MB

english, 2005

5

I-ApeI, a novel intron-encoded LAGLIDADG homing endonuclease from the archaeon, Aeropyrum pernix K1

Nomura, N., Morinaga, Y., Shirai, N., Sako, Y.

Journal:

Nucleic Acids Research

Year:

2005

File:

PDF, 24 KB

2005

6

Rapid generation of long synthetic tandem repeats and its application for analysis in human artificial chromosome formation

Ebersole, T., Okamoto, Y., Noskov, V. N., Kouprina, N., Kim, J.-H., Leem, S.-H., Barrett, J. C., Masumoto, H., Larionov, V.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 1.33 MB

english, 2005

7

Coordinate control of cell cycle regulatory genes in zebrafish development tested by cyclin D1 knockdown with morpholino phosphorodiamidates and hydroxyprolyl-phosphono peptide nucleic acids

Duffy, K. T., McAleer, M. F., Davidson, W. R., Kari, L., Kari, C., Liu, C.-G., Farber, S. A., Cheng, K. C., Mest, J. R., Wickstrom, E., Dicker, A. P., Rodeck, U.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 2.48 MB

english, 2005

8

Distant sequences determine 5' end formation of cox3 transcripts in Arabidopsis thaliana ecotype C24

Forner, J., Weber, B., Wietholter, C., Meyer, R. C., Binder, S.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 478 KB

english, 2005

9

Saccharomyces cerevisiae Mre11 is a high-affinity G4 DNA-binding protein and a G-rich DNA-specific endonuclease: implications for replication of telomeric DNA

Ghosal, G., Muniyappa, K.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 1.60 MB

english, 2005

10

dSAP18 and dHDAC1 contribute to the functional regulation of the Drosophila Fab-7 element

Canudas, S., Perez, S., Fanti, L., Pimpinelli, S., Singh, N., Hanes, S. D., Azorin, F., Espinas, M. L.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 2.60 MB

english, 2005

11

Single small-interfering RNA expression vector for silencing multiple transforming growth factor- pathway components

Jazag, A., Kanai, F., Ijichi, H., Tateishi, K., Ikenoue, T., Tanaka, Y., Ohta, M., Imamura, J., Guleng, B., Asaoka, Y., Kawabe, T., Miyagishi, M., Taira, K., Omata, M.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 2.31 MB

english, 2005

12

Structural and functional characterizations of mung bean mitochondrial nucleoids

Dai, H., Lo, Y.-S., Litvinchuk, A., Wang, Y.-T., Jane, W.-N., Hsiao, L.-J., Chiang, K.-S.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 3.96 MB

english, 2005

13

Thermodynamically based DNA strand design

Tulpan, D., Andronescu, M., Chang, S. B., Shortreed, M. R., Condon, A., Hoos, H. H., Smith, L. M.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 2.20 MB

english, 2005

14

Characterization of SpPol4, a unique X-family DNA polymerase in Schizosaccharomyces pombe

Gonzalez-Barrera, S., Sanchez, A., Ruiz, J. F., Juarez, R., Picher, A. J., Terrados, G., Andrade, P., Blanco, L.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 470 KB

english, 2005

15

A unique tRNA recognition mechanism of Caenorhabditis elegans mitochondrial EF-Tu2

Suematsu, T., Sato, A., Sakurai, M., Watanabe, K., Ohtsuki, T.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 1.24 MB

english, 2005

16

Tolerated wobble mutations in siRNAs decrease specificity, but can enhance activity in vivo

Holen, T., Moe, S. E., Sorbo, J. G., Meza, T. J., Ottersen, O. P., Klungland, A.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 576 KB

english, 2005

17

Characterization of cis- and trans-acting elements in the imprinted human SNURF-SNRPN locus

Rodriguez-Jato, S., Nicholls, R. D., Driscoll, D. J., Yang, T. P.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 1.24 MB

english, 2005

18

Characterization of the Type III restriction endonuclease PstII from Providencia stuartii

Sears, A., Peakman, L. J., Wilson, G. G., Szczelkun, M. D.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 759 KB

english, 2005

19

Subunit assembly modulates the activities of the Type III restriction-modification enzyme PstII in vitro

Sears, A., Szczelkun, M. D.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 384 KB

english, 2005

20

Identifying cooperative transcriptional regulations using protein-protein interactions

Nagamine, N., Kawada, Y., Sakakibara, Y.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 798 KB

english, 2005

21

Interaction of Staufen1 with the 5' end of mRNA facilitates translation of these RNAs

Dugre-Brisson, S., Elvira, G., Boulay, K., Chatel-Chaix, L., Mouland, A. J., DesGroseillers, L.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 1.73 MB

english, 2005

22

Molecular details of quinolone-DNA interactions: solution structure of an unusually stable DNA duplex with covalently linked nalidixic acid residues and non-covalent complexes derived from it

Siegmund, K., Maheshwary, S., Narayanan, S., Connors, W., Riedrich, M., Printz, M., Richert, C.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 3.64 MB

english, 2005

23

Structure of the uncomplexed DNA repair enzyme endonuclease VIII indicates significant interdomain flexibility

Golan, G., Zharkov, D. O., Feinberg, H., Fernandes, A. S., Zaika, E. I., Kycia, J. H., Grollman, A. P., Shoham, G.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 8.94 MB

english, 2005

24

Involvement of KSRP in the post-transcriptional regulation of human iNOS expression-complex interplay of KSRP with TTP and HuR

Linker, K., Pautz, A., Fechir, M., Hubrich, T., Greeve, J., Kleinert, H.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 2.01 MB

english, 2005

25

The Gumbel pre-factor k for gapped local alignment can be estimated from simulations of global alignment

Sheetlin, S., Park, Y., Spouge, J. L.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 340 KB

english, 2005

26

Reduction of nucleosome assembly during new DNA synthesis impairs both major pathways of double-strand break repair

Lewis, L. K., Karthikeyan, G., Cassiano, J., Resnick, M. A.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 1006 KB

english, 2005

27

Interactions between the archaeal Cdc6 and MCM proteins modulate their biochemical properties

Kasiviswanathan, R., Shin, J.-H., Kelman, Z.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 615 KB

english, 2005

28

Human vault-associated non-coding RNAs bind to mitoxantrone, a chemotherapeutic compound

Gopinath, S. C. B., Matsugami, A., Katahira, M., Kumar, P. K. R.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 578 KB

english, 2005

29

A thermodynamic approach to designing structure-free combinatorial DNA word sets

Shortreed, M. R., Chang, S. B., Hong, D., Phillips, M., Campion, B., Tulpan, D. C., Andronescu, M., Condon, A., Hoos, H. H., Smith, L. M.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 673 KB

english, 2005

30

An evolutionary intra-molecular shift in the preferred U3 snoRNA binding site on pre-ribosomal RNA

Borovjagin, A. V., Gerbi, S. A.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 701 KB

english, 2005

31

NEIL1 excises 3' end proximal oxidative DNA lesions resistant to cleavage by NTH1 and OGG1

Parsons, J. L., Zharkov, D. O., Dianov, G. L.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 1.31 MB

english, 2005

32

Detecting seeded motifs in DNA sequences

Pizzi, C., Bortoluzzi, S., Bisognin, A., Coppe, A., Danieli, G. A.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 102 KB

english, 2005

33

Multiplex SNP typing by bioluminometric assay coupled with terminator incorporation (BATI)

Zhou, G.-H., Gotou, M., Kajiyama, T., Kambara, H.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 811 KB

english, 2005

34

Direct isolation of specific RNA-interacting proteins using a novel affinity medium

Liu, D.-G., Sun, L.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 1.57 MB

english, 2005

35

Scoring schemes of palindrome clusters for more sensitive prediction of replication origins in herpesviruses

Chew, D. S. H., Choi, K. P., Leung, M.-Y.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 806 KB

english, 2005

36

Biased exon/intron distribution of cryptic and de novo 3' splice sites

Kralovicova, J., Christensen, M. B., Vorechovsky, I.

Journal:

Nucleic Acids Research

Year:

2005

File:

PDF, 2.88 MB

2005

37

Biased exon/intron distribution of cryptic and de novo 3' splice sites

Kralovicova, J., Christensen, M. B., Vorechovsky, I.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 2.88 MB

english, 2005

38

Quenched autoligation probes allow discrimination of live bacterial species by single nucleotide differences in rRNA

Silverman, A. P., Kool, E. T.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 572 KB

english, 2005

39

Efficient isothermal expansion of human telomeric and minisatellite repeats by Thermococcus litoralis DNA polymerase

Hartig, J. S., Kool, E. T.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 1.64 MB

english, 2005