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Volume 35; Issue 1
Main
Nucleic Acids Research
Volume 35; Issue 1
Nucleic Acids Research
Volume 35; Issue 1
1
Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis
Gilbert, M. T. P.
,
Binladen, J.
,
Miller, W.
,
Wiuf, C.
,
Willerslev, E.
,
Poinar, H.
,
Carlson, J. E.
,
Leebens-Mack, J. H.
,
Schuster, S. C.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 219 KB
Your tags:
english, 2006
2
Structural basis for activation of the therapeutic L-nucleoside analogs 3TC and troxacitabine by human deoxycytidine kinase
Sabini, E.
,
Hazra, S.
,
Konrad, M.
,
Burley, S. K.
,
Lavie, A.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 3.97 MB
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english, 2006
3
Different levels of alternative splicing among eukaryotes
Kim, E.
,
Magen, A.
,
Ast, G.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 1.40 MB
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english, 2006
4
Toxin-antitoxin regulation: bimodal interaction of YefM-YoeB with paired DNA palindromes exerts transcriptional autorepression
Kedzierska, B.
,
Lian, L.-Y.
,
Hayes, F.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 2.23 MB
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english, 2006
5
p53 and p73 display common and distinct requirements for sequence specific binding to DNA
Lokshin, M.
,
Li, Y.
,
Gaiddon, C.
,
Prives, C.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 4.35 MB
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english, 2006
6
LEDGF/p75 interacts with divergent lentiviral integrases and modulates their enzymatic activity in vitro
Cherepanov, P.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 2.46 MB
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english, 2006
7
The chemical stability of abasic RNA compared to abasic DNA
Kupfer, P. A.
,
Leumann, C. J.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 1.04 MB
Your tags:
english, 2006
8
An efficient method for multi-locus molecular haplotyping
Konfortov, B. A.
,
Bankier, A. T.
,
Dear, P. H.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 218 KB
Your tags:
english, 2006
9
Exploring membrane-associated NAC transcription factors in Arabidopsis: implications for membrane biology in genome regulation
Kim, S.-Y.
,
Kim, S.-G.
,
Kim, Y.-S.
,
Seo, P. J.
,
Bae, M.
,
Yoon, H.-K.
,
Park, C.-M.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 8.49 MB
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english, 2006
10
Control of carry-over contamination for PCR-based DNA methylation quantification using bisulfite treated DNA
Tetzner, R.
,
Dietrich, D.
,
Distler, J.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 432 KB
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english, 2006
11
Switching base preferences of mismatch cleavage in endonuclease V: an improved method for scanning point mutations
Gao, H.
,
Huang, J.
,
Barany, F.
,
Cao, W.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 2.17 MB
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english, 2006
12
Transcription factor distribution in Escherichia coli: studies with FNR protein
Grainger, D. C.
,
Aiba, H.
,
Hurd, D.
,
Browning, D. F.
,
Busby, S. J. W.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 2.11 MB
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english, 2006
13
Expanding the repertoire of DNA polymerase substrates: template-instructed incorporation of non-nucleoside triphosphate analogues by DNA polymerases and
Crespan, E.
,
Alexandrova, L.
,
Khandazhinskaya, A.
,
Jasko, M.
,
Kukhanova, M.
,
Villani, G.
,
Hubscher, U.
,
Spadari, S.
,
Maga, G.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 1.30 MB
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english, 2006
14
Purine analog substitution of the HIV-1 polypurine tract primer defines regions controlling initiation of plus-strand DNA synthesis
Rausch, J. W.
,
Le Grice, S. F. J.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 4.69 MB
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english, 2006
15
Nonlinear differential equation model for quantification of transcriptional regulation applied to microarray data of Saccharomyces cerevisiae
Vu, T. T.
,
Vohradsky, J.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 263 KB
Your tags:
english, 2006
16
Structure of a nucleotide-bound Clp1-Pcf11 polyadenylation factor
Noble, C. G.
,
Beuth, B.
,
Taylor, I. A.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 7.47 MB
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english, 2006
17
Duplex strand joining reactions catalyzed by vaccinia virus DNA polymerase
Hamilton, M. D.
,
Nuara, A. A.
,
Gammon, D. B.
,
Buller, R. M.
,
Evans, D. H.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 2.65 MB
Your tags:
english, 2006
18
Operon prediction using both genome-specific and general genomic information
Dam, P.
,
Olman, V.
,
Harris, K.
,
Su, Z.
,
Xu, Y.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 273 KB
Your tags:
english, 2006
19
Fragile X related protein 1 isoforms differentially modulate the affinity of fragile X mental retardation protein for G-quartet RNA structure
Bechara, E.
,
Davidovic, L.
,
Melko, M.
,
Bensaid, M.
,
Tremblay, S.
,
Grosgeorge, J.
,
Khandjian, E. W.
,
Lalli, E.
,
Bardoni, B.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 2.73 MB
Your tags:
english, 2006
20
Use of modified U1 snRNAs to inhibit HIV-1 replication
Sajic, R.
,
Lee, K.
,
Asai, K.
,
Sakac, D.
,
Branch, D. R.
,
Upton, C.
,
Cochrane, A.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 1.42 MB
Your tags:
english, 2006
21
An evaluation of contemporary hidden Markov model genefinders with a predicted exon taxonomy
Knapp, K.
,
Chen, Y.-P. P.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 500 KB
Your tags:
english, 2006
22
Chimeric DNA methyltransferases target DNA methylation to specific DNA sequences and repress expression of target genes
Li, F.
,
Papworth, M.
,
Minczuk, M.
,
Rohde, C.
,
Zhang, Y.
,
Ragozin, S.
,
Jeltsch, A.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 1.73 MB
Your tags:
english, 2006
23
Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae
Yarragudi, A.
,
Parfrey, L. W.
,
Morse, R. H.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 2.11 MB
Your tags:
english, 2006
24
Dispersion of the RmInt1 group II intron in the Sinorhizobium meliloti genome upon acquisition by conjugative transfer
Nisa-Martinez, R.
,
Jimenez-Zurdo, J. I.
,
Martinez-Abarca, F.
,
Munoz-Adelantado, E.
,
Toro, N.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 1.53 MB
Your tags:
english, 2006
25
The p16INK4a tumor suppressor controls p21WAF1 induction in response to ultraviolet light
Al-Mohanna, M. A.
,
Al-Khalaf, H. H.
,
Al-Yousef, N.
,
Aboussekhra, A.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 2.85 MB
Your tags:
english, 2006
26
CoMoDis: composite motif discovery in mammalian genomes
Donaldson, I. J.
,
Gottgens, B.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 142 KB
Your tags:
english, 2006
27
An improved method to identify BAC clones using pooled overgos
Madishetty, K.
,
Condamine, P.
,
Svensson, J. T.
,
Rodriguez, E.
,
Close, T. J.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 147 KB
Your tags:
english, 2006
28
Multiple primer extension by DNA polymerase on a novel plastic DNA array coated with a biocompatible polymer
Kinoshita, K.
,
Fujimoto, K.
,
Yakabe, T.
,
Saito, S.
,
Hamaguchi, Y.
,
Kikuchi, T.
,
Nonaka, K.
,
Murata, S.
,
Masuda, D.
,
Takada, W.
,
Funaoka, S.
,
Arai, S.
,
Nakanishi, H.
,
Yokoyama, K.
,
Fujiwara, K.
,
Matsub
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 1.39 MB
Your tags:
english, 2006
29
Complex splicing control of the human Thrombopoietin gene by intronic G runs
Marcucci, R.
,
Baralle, F. E.
,
Romano, M.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 1.83 MB
Your tags:
english, 2006
30
Operon prediction in Pyrococcus furiosus
Tran, T. T.
,
Dam, P.
,
Su, Z.
,
Poole, F. L.
,
Adams, M. W. W.
,
Zhou, G. T.
,
Xu, Y.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 1.06 MB
Your tags:
english, 2006
31
Epitope mapping using combinatorial phage-display libraries: a graph-based algorithm
Mayrose, I.
,
Shlomi, T.
,
Rubinstein, N. D.
,
Gershoni, J. M.
,
Ruppin, E.
,
Sharan, R.
,
Pupko, T.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 999 KB
Your tags:
english, 2006
32
RecA can stimulate the relaxation activity of topoisomerase I: Molecular basis of topoisomerase-mediated genome-wide transcriptional responses in Escherichia coli
Reckinger, A. R.
,
Jeong, K. S.
,
Khodursky, A. B.
,
Hiasa, H.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 2.24 MB
Your tags:
english, 2006
33
Insect small nuclear RNA gene promoters evolve rapidly yet retain conserved features involved in determining promoter activity and RNA polymerase specificity
Hernandez, G.
,
Valafar, F.
,
Stumph, W. E.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 8.17 MB
Your tags:
english, 2006
34
Identification of functional, endogenous programmed -1 ribosomal frameshift signals in the genome of Saccharomyces cerevisiae
Jacobs, J. L.
,
Belew, A. T.
,
Rakauskaite, R.
,
Dinman, J. D.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 982 KB
Your tags:
english, 2006
35
Systematic variation in mRNA 3'-processing signals during mouse spermatogenesis
Liu, D.
,
Brockman, J. M.
,
Dass, B.
,
Hutchins, L. N.
,
Singh, P.
,
McCarrey, J. R.
,
MacDonald, C. C.
,
Graber, J. H.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 3.44 MB
Your tags:
english, 2006
36
Global analysis of microRNA target gene expression reveals that miRNA targets are lower expressed in mature mouse and Drosophila tissues than in the embryos
Yu, Z.
,
Jian, Z.
,
Shen, S.-H.
,
Purisima, E.
,
Wang, E.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 1.40 MB
Your tags:
english, 2006
37
Functional interaction between the homeoprotein CDX1 and the transcriptional machinery containing the TATA-binding protein
Calon, A.
,
Gross, I.
,
Davidson, I.
,
Kedinger, M.
,
Duluc, I.
,
Domon-Dell, C.
,
Freund, J.-N.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 2.06 MB
Your tags:
english, 2006
38
A critical role for the loop region of the basic helix-loop-helix/leucine zipper protein Mlx in DNA binding and glucose-regulated transcription
Ma, L.
,
Sham, Y. Y.
,
Walters, K. J.
,
Towle, H. C.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 3.42 MB
Your tags:
english, 2006
39
Unanticipated differences between - and -diaminobutyric acid-linked hairpin polyamide-alkylator conjugates
Tsai, S. M.
,
Farkas, M. E.
,
Chou, C. J.
,
Gottesfeld, J. M.
,
Dervan, P. B.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 2.16 MB
Your tags:
english, 2006
40
Gene loss rate: a probabilistic measure for the conservation of eukaryotic genes
Borenstein, E.
,
Shlomi, T.
,
Ruppin, E.
,
Sharan, R.
Journal:
Nucleic Acids Research
Year:
2006
Language:
english
File:
PDF, 350 KB
Your tags:
english, 2006
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