Volume 35; Issue 12

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Nucleic Acids Research
Volume 35; Issue 12

Nucleic Acids Research

Volume 35; Issue 12

1

Novel zinc-based fixative for high quality DNA, RNA and protein analysis

Lykidis, D., Van Noorden, S., Armstrong, A., Spencer-Dene, B., Li, J., Zhuang, Z., Stamp, G. W. H.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 4.00 MB

english, 2007

2

Regulation of DNA nucleases by molecular crowding

Sasaki, Y., Miyoshi, D., Sugimoto, N.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.11 MB

english, 2007

3

A new connection of mRNP biogenesis and export with transcription-coupled repair

Gaillard, H., Wellinger, R. E., Aguilera, A.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 6.19 MB

english, 2007

4

A 96-well DNase I footprinting screen for drug-DNA interactions

Ellis, T., Evans, D. A., Martin, C. R. H., Hartley, J. A.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 6.13 MB

english, 2007

5

Synthesis and investigation of deoxyribonucleic acid/locked nucleic acid chimeric molecular beacons

Yang, C. J., Wang, L., Wu, Y., Kim, Y., Medley, C. D., Lin, H., Tan, W.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.89 MB

english, 2007

6

Effects of nucleic acid local structure and magnesium ions on minus-strand transfer mediated by the nucleic acid chaperone activity of HIV-1 nucleocapsid protein

Wu, T., Heilman-Miller, S. L., Levin, J. G.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 414 KB

english, 2007

7

A statistical learning approach to the modeling of chromatographic retention of oligonucleotides incorporating sequence and secondary structure data

Sturm, M., Quinten, S., Huber, C. G., Kohlbacher, O.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 175 KB

english, 2007

8

Conditional brain-specific knockdown of MAPK using Cre/loxP regulated RNA interference

Hitz, C., Wurst, W., Kuhn, R.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 3.91 MB

english, 2007

9

Molecular interactions of Escherichia coli ExoIX and identification of its associated 3'-5' exonuclease activity

Hodskinson, M. R. G., Allen, L. M., Thomson, D. P., Sayers, J. R.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 4.76 MB

english, 2007

10

Uracil-DNA glycosylases SMUG1 and UNG2 coordinate the initial steps of base excision repair by distinct mechanisms

Pettersen, H. S., Sundheim, O., Gilljam, K. M., Slupphaug, G., Krokan, H. E., Kavli, B.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 4.22 MB

english, 2007

11

Explaining differences in saturation levels for Affymetrix GeneChip(R) arrays

Skvortsov, D., Abdueva, D., Curtis, C., Schaub, B., Tavare, S.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.85 MB

english, 2007

12

Cockayne syndrome B protein stimulates apurinic endonuclease 1 activity and protects against agents that introduce base excision repair intermediates

Wong, H.-K., Muftuoglu, M., Beck, G., Imam, S. Z., Bohr, V. A., Wilson, D. M.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 603 KB

english, 2007

13

Efficient and exclusive induction of Tet repressor by the oligopeptide Tip results from co-variation of their interaction site

Klotzsche, M., Goeke, D., Berens, C., Hillen, W.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 474 KB

english, 2007

14

'In-line attack' conformational effect plays a modest role in an enzyme-catalyzed RNA cleavage: a free energy simulation study

Min, D., Xue, S., Li, H., Yang, W.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 4.17 MB

english, 2007

15

Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors

Chen, Y.-I G., Moore, R. E., Ge, H. Y., Young, M. K., Lee, T. D., Stevens, S. W.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.63 MB

english, 2007

16

The selenoproteome exhibits widely varying, tissue-specific dependence on selenoprotein P for selenium supply

Hoffmann, P. R., Hoge, S. C., Li, P.-A., Hoffmann, F. W., Hashimoto, A. C., Berry, M. J.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 605 KB

english, 2007

17

In vitro selection of a 5'-purine ribonucleotide transferase ribozyme

Kang, T. J., Suga, H.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 4.59 MB

english, 2007

18

Phosphorylation in the serine/threonine 2609-2647 cluster promotes but is not essential for DNA-dependent protein kinase-mediated nonhomologous end joining in human whole-cell extracts

Povirk, L. F., Zhou, R.-Z., Ramsden, D. A., Lees-Miller, S. P., Valerie, K.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 3.75 MB

english, 2007

19

Rad51 and Rad54 ATPase activities are both required to modulate Rad51-dsDNA filament dynamics

Li, X., Zhang, X.-P., Solinger, J. A., Kiianitsa, K., Yu, X., Egelman, E. H., Heyer, W.-D.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 4.83 MB

english, 2007

20

Functional analysis of Saccharomyces cerevisiae ribosomal protein Rpl3p in ribosome synthesis

Rosado, I. V., Kressler, D., de la Cruz, J.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 13.47 MB

english, 2007

21

A versatile computational pipeline for bacterial genome annotation improvement and comparative analysis, with Brucella as a use case

Yu, G.X., Snyder, E.E., Boyle, S.M., Crasta, O.R., Czar, M., Mane, S.P., Purkayastha, A., Sobral, B., Setubal, J.C.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 7.97 MB

english, 2007

22

Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli

Becker, N. A., Kahn, J. D., Maher, L. J.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 862 KB

english, 2007

23

DSIF contributes to transcriptional activation by DNA-binding activators by preventing pausing during transcription elongation

Zhu, W., Wada, T., Okabe, S., Taneda, T., Yamaguchi, Y., Handa, H.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 3.16 MB

english, 2007

24

PLP/DM20 ratio is regulated by hnRNPH and F and a novel G-rich enhancer in oligodendrocytes

Wang, E., Dimova, N., Cambi, F.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 5.69 MB

english, 2007

25

Intramolecular DNA quadruplexes with different arrangements of short and long loops

Rachwal, P. A., Findlow, I. S., Werner, J. M., Brown, T., Fox, K. R.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 3.03 MB

english, 2007

26

The -11A of promoter DNA and two conserved amino acids in the melting region of 70 both directly affect the rate limiting step in formation of the stable RNA polymerase-promoter complex, but they do not necessarily interact

Schroeder, L. A., Choi, A.-J., deHaseth, P. L.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 354 KB

english, 2007

27

Nuclear interactions of topoisomerase II and with phospholipid scramblase 1

Wyles, J. P., Wu, Z., Mirski, S. E.L., Cole, S. P.C.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 3.29 MB

english, 2007

28

Characterization of the sequence specificity of the R1Bm endonuclease domain by structural and biochemical studies

Maita, N., Aoyagi, H., Osanai, M., Shirakawa, M., Fujiwara, H.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 9.47 MB

english, 2007

29

Nuclear accumulation of plasmid DNA can be enhanced by non-selective gating of the nuclear pore

Vandenbroucke, R. E., Lucas, B., Demeester, J., De Smedt, S. C., Sanders, N. N.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 3.73 MB

english, 2007

30

Multiple functions for the N-terminal region of Msh6

Clark, A. B., Deterding, L., Tomer, K. B., Kunkel, T. A.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 937 KB

english, 2007

31

Generation of an inducible and optimized piggyBac transposon system

Cadinanos, J., Bradley, A.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.03 MB

english, 2007

32

Small multicopy, non-integrative shuttle vectors based on the plasmid pRN1 for Sulfolobus acidocaldarius and Sulfolobus solfataricus, model organisms of the (cren-)archaea

Berkner, S., Grogan, D., Albers, S.-V., Lipps, G.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.76 MB

english, 2007

33

Elastic properties of ribosomal RNA building blocks: molecular dynamics of the GTPase-associated center rRNA

Razga, F., Koca, J., Mokdad, A., Sponer, J.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 21.16 MB

english, 2007

34

Functional genetic selection of Helix 66 in Escherichia coli 23S rRNA identified the eukaryotic-binding sequence for ribosomal protein L2

Kitahara, K., Kajiura, A., Sato, N. S., Suzuki, T.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.94 MB

english, 2007

35

Cellular antisense activity of peptide nucleic acid (PNAs) targeted to HIV-1 polypurine tract (PPT) containing RNA

Boutimah-Hamoudi, F., Leforestier, E., Senamaud-Beaufort, C., Nielsen, P. E., Giovannangeli, C., Saison-Behmoaras, T. E.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.04 MB

english, 2007

36

A chemical synthesis of LNA-2,6-diaminopurine riboside, and the influence of 2'-O-methyl-2,6-diaminopurine and LNA-2,6-diaminopurine ribosides on the thermodynamic properties of 2'-O-methyl RNA/RNA heteroduplexes

Pasternak, A., Kierzek, E., Pasternak, K., Turner, D. H., Kierzek, R.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 147 KB

english, 2007

37

s-RT-MELT for rapid mutation scanning using enzymatic selection and real time DNA-melting: new potential for multiplex genetic analysis

Li, J., Berbeco, R., Distel, R. J., Janne, P. A., Wang, L., Makrigiorgos, G. M.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 292 KB

english, 2007