Volume 35; Issue 7

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Nucleic Acids Research
Volume 35; Issue 7

Nucleic Acids Research

Volume 35; Issue 7

1

USER fusion: a rapid and efficient method for simultaneous fusion and cloning of multiple PCR products

Geu-Flores, F., Nour-Eldin, H. H., Nielsen, M. T., Halkier, B. A.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.23 MB

english, 2007

2

The neutrophil-activating Dps protein of Helicobacter pylori, HP-NAP, adopts a mechanism different from Escherichia coli Dps to bind and condense DNA

Ceci, P., Mangiarotti, L., Rivetti, C., Chiancone, E.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 3.15 MB

english, 2007

3

Epigenetic disruption of ribosomal RNA genes and nucleolar architecture in DNA methyltransferase 1 (Dnmt1) deficient cells

Espada, J., Ballestar, E., Santoro, R., Fraga, M. F., Villar-Garea, A., Nemeth, A., Lopez-Serra, L., Ropero, S., Aranda, A., Orozco, H., Moreno, V., Juarranz, A., Stockert, J. C., Langst, G., Grummt,

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 494 KB

english, 2007

4

Site-directed transposon integration in human cells

Yant, S. R., Huang, Y., Akache, B., Kay, M. A.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 3.29 MB

english, 2007

5

Reversible gene knockdown in mice using a tight, inducible shRNA expression system

Seibler, J., Kleinridders, A., Kuter-Luks, B., Niehaves, S., Bruning, J. C., Schwenk, F.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 391 KB

english, 2007

6

Graph-based identification of cancer signaling pathways from published gene expression signatures using PubLiME

Finocchiaro, G., Mancuso, F. M., Cittaro, D., Muller, H.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 8.43 MB

english, 2007

7

The protein that binds to DNA base J in trypanosomatids has features of a thymidine hydroxylase

Yu, Z., Genest, P.-A., ter Riet, B., Sweeney, K., DiPaolo, C., Kieft, R., Christodoulou, E., Perrakis, A., Simmons, J. M., Hausinger, R. P., van Luenen, H. G.A.M., Rigden, D. J., Sabatini, R., Borst,

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.24 MB

english, 2007

8

Deciphering RNA structural diversity and systematic phylogeny from microbial metagenomes

Zhu, Y., Pulukkunat, D. K., Li, Y.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.07 MB

english, 2007

9

Structure of the intramolecular human telomeric G-quadruplex in potassium solution: a novel adenine triple formation

Dai, J., Punchihewa, C., Ambrus, A., Chen, D., Jones, R. A., Yang, D.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 3.67 MB

english, 2007

10

Multiplex amplification of all coding sequences within 10 cancer genes by Gene-Collector

Fredriksson, S., Baner, J., Dahl, F., Chu, A., Ji, H., Welch, K., Davis, R. W.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 142 KB

english, 2007

11

Consensus sequences improve PSI-BLAST through mimicking profile-profile alignments

Przybylski, D., Rost, B.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 244 KB

english, 2007

12

Molecular mechanism of upregulation of survivin transcription by the AT-rich DNA-binding ligand, Hoechst33342: evidence for survivin involvement in drug resistance

Wu, J., Apontes, P., Song, L., Liang, P., Yang, L., Li, F.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 5.04 MB

english, 2007

13

A novel microarray approach reveals new tissue-specific signatures of known and predicted mammalian microRNAs

Beuvink, I., Kolb, F. A., Budach, W., Garnier, A., Lange, J., Natt, F., Dengler, U., Hall, J., Filipowicz, W., Weiler, J.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 4.92 MB

english, 2007

14

Structural insight into repair of alkylated DNA by a new superfamily of DNA glycosylases comprising HEAT-like repeats

Dalhus, B., Helle, I. H., Backe, P. H., Alseth, I., Rognes, T., Bjoras, M., Laerdahl, J. K.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 3.70 MB

english, 2007

15

The C-terminal domain of the Escherichia coli RNA polymerase subunit plays a role in the CI-dependent activation of the bacteriophage pM promoter

Kedzierska, B., Szambowska, A., Herman-Antosiewicz, A., Lee, D. J., Busby, S. J.W., Wegrzyn, G., Thomas, M. S.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.14 MB

english, 2007

16

Transactivation of a DR-1 PPRE by a human constitutive androstane receptor variant expressed from internal protein translation start sites

Stoner, M. A., Auerbach, S. S., Zamule, S. M., Strom, S. C., Omiecinski, C. J.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 4.47 MB

english, 2007

17

Orphan nuclear receptor TR2, a mediator of preadipocyte proliferation, is differentially regulated by RA through exchange of coactivator PCAF with corepressor RIP140 on a platform molecule GRIP1

Gupta, P., Park, S. W., Farooqui, M., Wei, L.-N.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 4.58 MB

english, 2007

18

Ribosomal protein S1 influences trans-translation in vitro and in vivo

Saguy, M., Gillet, R., Skorski, P., Hermann-Le Denmat, S., Felden, B.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 241 KB

english, 2007

19

Regulation of histone H3K4 tri-methylation and PAF complex recruitment by the Ccr4-Not complex

Mulder, K. W., Brenkman, A. B., Inagaki, A., van den Broek, N. J. F., Marc Timmers, H. Th.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 3.96 MB

english, 2007

20

Entropically-driven binding of mithramycin in the minor groove of C/G-rich DNA sequences

Barcelo, F., Scotta, C., Ortiz-Lombardia, M., Mendez, C., Salas, J. A., Portugal, J.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.89 MB

english, 2007

21

Restriction endonuclease BpuJI specific for the 5'-CCCGT sequence is related to the archaeal Holliday junction resolvase family

Sukackaite, R., Lagunavicius, A., Stankevicius, K., Urbanke, C., Venclovas, C., Siksnys, V.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 3.51 MB

english, 2007

22

RNase T1 mimicking artificial ribonuclease

Mironova, N. L., Pyshnyi, D. V., Shtadler, D. V., Fedorova, A. A., Vlassov, V. V., Zenkova, M. A.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.79 MB

english, 2007

23

Improving comparability between microarray probe signals by thermodynamic intensity correction

Bruun, G. M., Wernersson, R., Juncker, A. S., Willenbrock, H., Nielsen, H. B.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 175 KB

english, 2007

24

Hierarchical classification of functionally equivalent genes in prokaryotes

Wu, H., Mao, F., Olman, V., Xu, Y.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 5.36 MB

english, 2007

25

A non-covalent peptide-based carrier for in vivo delivery of DNA mimics

Morris, M. C., Gros, E., Aldrian-Herrada, G., Choob, M., Archdeacon, J., Heitz, F., Divita, G.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 593 KB

english, 2007

26

ElrA binding to the 3'UTR of cyclin E1 mRNA requires polyadenylation elements

Slevin, M. K., Gourronc, F., Hartley, R. S.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 5.46 MB

english, 2007

27

Ribosomal RNA guanine-(N2)-methyltransferases and their targets

Sergiev, P. V., Bogdanov, A. A., Dontsova, O. A.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.16 MB

english, 2007

28

Telomeric localization of the modified DNA base J in the genome of the protozoan parasite Leishmania

Genest, P.-A., ter Riet, B., Cijsouw, T., van Luenen, H. G.A.M., Borst, P.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.95 MB

english, 2007

29

Formation of 8-oxo-7,8-dihydroguanine-radicals in -irradiated DNA by multiple one-electron oxidations

Shukla, L. I., Adhikary, A., Pazdro, R., Becker, D., Sevilla, M. D.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.62 MB

english, 2007

30

Array-based profiling of reference-independent methylation status (aPRIMES) identifies frequent promoter methylation and consecutive downregulation of ZIC2 in pediatric medulloblastoma

Pfister, S., Schlaeger, C., Mendrzyk, F., Wittmann, A., Benner, A., Kulozik, A., Scheurlen, W., Radlwimmer, B., Lichter, P.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 6.60 MB

english, 2007

31

Dynamic binding of Ku80, Ku70 and NF90 to the IL-2 promoter in vivo in activated T-cells

Shi, L., Qiu, D., Zhao, G., Corthesy, B., Lees-Miller, S., Reeves, W. H., Kao, P. N.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 3.95 MB

english, 2007

32

Bioinformatic prediction and experimental verification of Fur-regulated genes in the extreme acidophile Acidithiobacillus ferrooxidans

Quatrini, R., Lefimil, C., Veloso, F. A., Pedroso, I., Holmes, D. S., Jedlicki, E.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.02 MB

english, 2007

33

The L1Tc non-LTR retrotransposon of Trypanosoma cruzi contains an internal RNA-pol II-dependent promoter that strongly activates gene transcription and generates unspliced transcripts

Heras, S. R., Lopez, M. C., Olivares, M., Thomas, M. C.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.71 MB

english, 2007

34

Analysis of the role of Aurora B on the chromosomal targeting of condensin I

Takemoto, A., Murayama, A., Katano, M., Urano, T., Furukawa, K., Yokoyama, S., Yanagisawa, J., Hanaoka, F., Kimura, K.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 4.27 MB

english, 2007

35

Conserved interactions of the splicing factor Ntr1/Spp382 with proteins involved in DNA double-strand break repair and telomere metabolism

Herrmann, G., Kais, S., Hoffbauer, J., Shah-Hosseini, K., Bruggenolte, N., Schober, H., Fasi, M., Schar, P.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 8.44 MB

english, 2007

36

Trans-splicing of the Ll.LtrB group II intron in Lactococcus lactis

Belhocine, K., Mak, A. B., Cousineau, B.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 589 KB

english, 2007