Volume 35; Issue Database

Nucleic Acids Research

Volume 35; Issue Database
5

SwissRegulon: a database of genome-wide annotations of regulatory sites

Pachkov, M., Erb, I., Molina, N., van Nimwegen, E.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 164 KB
english, 2007
6

UniHI: an entry gate to the human protein interactome

Chaurasia, G., Iqbal, Y., Hanig, C., Herzel, H., Wanker, E. E., Futschik, M. E.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 2.16 MB
english, 2007
19

SUBA: the Arabidopsis Subcellular Database

Heazlewood, J. L., Verboom, R. E., Tonti-Filippini, J., Small, I., Millar, A. H.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 1.05 MB
english, 2007
29

VISTA Enhancer Browser--a database of tissue-specific human enhancers

Visel, A., Minovitsky, S., Dubchak, I., Pennacchio, L. A.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 1.78 MB
english, 2007
39

RetrOryza: a database of the rice LTR-retrotransposons

Chaparro, C., Guyot, R., Zuccolo, A., Piegu, B., Panaud, O.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 3.00 MB
english, 2007
40

EVEREST: a collection of evolutionary conserved protein domains

Portugaly, E., Linial, N., Linial, M.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 680 KB
english, 2007
44

SNPSTR: a database of compound microsatellite-SNP markers

Agrafioti, I., Stumpf, M. P. H.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 1.93 MB
english, 2007
49

TRDB--The Tandem Repeats Database

Gelfand, Y., Rodriguez, A., Benson, G.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 3.46 MB
english, 2007
50

PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes

Lee, J. Y., Yeh, I., Park, J. Y., Tian, B.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 66 KB
english, 2007
53

Snap: an integrated SNP annotation platform

Li, S., Ma, L., Li, H., Vang, S., Hu, Y., Bolund, L., Wang, J.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 1.36 MB
english, 2007
60

The Molecular Biology Database Collection: 2007 update

Galperin, M. Y.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 71 KB
english, 2007
66

Mouse Phenome Database (MPD)

Bogue, M. A., Grubb, S. C., Maddatu, T. P., Bult, C. J.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 2.30 MB
english, 2007
70

OriDB: a DNA replication origin database

Nieduszynski, C. A., Hiraga, S.-i., Ak, P., Benham, C. J., Donaldson, A. D.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 1.58 MB
english, 2007
72

qPrimerDepot: a primer database for quantitative real time PCR

Cui, W., Taub, D. D., Gardner, K.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 565 KB
english, 2007
73

PROTCOM: searchable database of protein complexes enhanced with domain-domain structures

Kundrotas, P. J., Alexov, E.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 2.91 MB
english, 2007
75

eSLDB: eukaryotic subcellular localization database

Pierleoni, A., Martelli, P. L., Fariselli, P., Casadio, R.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 1.28 MB
english, 2007
76

BeetleBase: the model organism database for Tribolium castaneum

Wang, L., Wang, S., Li, Y., Paradesi, M. S. R., Brown, S. J.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 1.33 MB
english, 2007
78

InSatDb: a microsatellite database of fully sequenced insect genomes

Archak, S., Meduri, E., Kumar, P. S., Nagaraju, J.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 2.52 MB
english, 2007
81

NATsDB: Natural Antisense Transcripts DataBase

Zhang, Y., Li, J., Kong, L., Gao, G., Liu, Q.-R., Wei, L.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 2.45 MB
english, 2007
84

REDIdb: the RNA editing database

Picardi, E., Regina, T. M. R., Brennicke, A., Quagliariello, C.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 1.18 MB
english, 2007
85

POGs/PlantRBP: a resource for comparative genomics in plants

Walker, N. S., Stiffler, N., Barkan, A.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 3.95 MB
english, 2007
86

U12DB: a database of orthologous U12-type spliceosomal introns

Alioto, T. S.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 2.11 MB
english, 2007
88

PIDD: database for Protein Inter-atomic Distance Distributions

Wu, D., Cui, F., Jernigan, R., Wu, Z.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 1.42 MB
english, 2007
90

PigGIS: Pig Genomic Informatics System

Ruan, J., Guo, Y., Li, H., Hu, Y., Song, F., Huang, X., Kristiensen, K., Bolund, L., Wang, J.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 1.30 MB
english, 2007
94

dbRES: a web-oriented database for annotated RNA editing sites

He, T., Du, P., Li, Y.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 3.45 MB
english, 2007
99

FlyBase: genomes by the dozen

Crosby, M. A., Goodman, J. L., Strelets, V. B., Zhang, P., Gelbart, W. M.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 2.22 MB
english, 2007
103

The Sulfolobus database

Brugger, K.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 901 KB
english, 2007
107

The HIV positive selection mutation database

Pan, C., Kim, J., Chen, L., Wang, Q., Lee, C.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 865 KB
english, 2007
111

VNTRDB: a bacterial variable number tandem repeat locus database

Chang, C.-H., Chang, Y.-C., Underwood, A., Chiou, C.-S., Kao, C.-Y.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 915 KB
english, 2007
116

FireDB--a database of functionally important residues from proteins of known structure

Lopez, G., Valencia, A., Tress, M.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 1.81 MB
english, 2007
119

The SUPERFAMILY database in 2007: families and functions

Wilson, D., Madera, M., Vogel, C., Chothia, C., Gough, J.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 225 KB
english, 2007
126

The Universal Protein Resource (UniProt)

Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 70 KB
english, 2007
128

MiST: a microbial signal transduction database

Ulrich, L. E., Zhulin, I. B.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 612 KB
english, 2007
134

Variation resources at UC Santa Cruz

Thomas, D. J., Trumbower, H., Kern, A. D., Rhead, B. L., Kuhn, R. M., Haussler, D., Kent, W. J.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 732 KB
english, 2007
136

DOMINO: a database of domain-peptide interactions

Ceol, A., Chatr-aryamontri, A., Santonico, E., Sacco, R., Castagnoli, L., Cesareni, G.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 1.01 MB
english, 2007
137

SNP@Ethnos: a database of ethnically variant single-nucleotide polymorphisms

Park, J., Hwang, S., Lee, Y. S., Kim, S.-C., Lee, D.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 2.08 MB
english, 2007
140

Developments in CORG: a gene-centric comparative genomics resource

Dieterich, C., Franz, M. W., Vingron, M.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 482 KB
english, 2007
143

GenBank

Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J., Wheeler, D. L.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 74 KB
english, 2007
145

GeneSpeed: protein domain organization of the transcriptome

Kutchma, A., Quayum, N., Jensen, J.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 759 KB
english, 2007
146

Noncoding RNAs database (ncRNAdb)

Szymanski, M., Erdmann, V. A., Barciszewski, J.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 51 KB
english, 2007
147

DroSpeGe: rapid access database for new Drosophila species genomes

Gilbert, D. G.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 1.50 MB
english, 2007
148

SuperHapten: a comprehensive database for small immunogenic compounds

Gunther, S., Hempel, D., Dunkel, M., Rother, K., Preissner, R.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 831 KB
english, 2007
152

ViTa: prediction of host microRNAs targets on viruses

Hsu, P. W.-C., Lin, L.-Z., Hsu, S.-D., Hsu, J. B.-K., Huang, H.-D.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 2.27 MB
english, 2007
154

REBASE--enzymes and genes for DNA restriction and modification

Roberts, R. J., Vincze, T., Posfai, J., Macelis, D.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 99 KB
english, 2007
155

GenomeRNAi: a database for cell-based RNAi phenotypes

Horn, T., Arziman, Z., Berger, J., Boutros, M.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 2.21 MB
english, 2007
158

Entrez Gene: gene-centered information at NCBI

Maglott, D., Ostell, J., Pruitt, K. D., Tatusova, T.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 3.87 MB
english, 2007
159

AthaMap web tools for the analysis and identification of co-regulated genes

Galuschka, C., Schindler, M., Bulow, L., Hehl, R.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 1.09 MB
english, 2007
160

GO PaD: the Gene Ontology Partition Database

Alterovitz, G., Xiang, M., Mohan, M., Ramoni, M. F.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 1.21 MB
english, 2007
161

EDITORIAL

Batemen, A.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 32 KB
english, 2007
162

HepSEQ: International Public Health Repository for Hepatitis B

Gnaneshan, S., Ijaz, S., Moran, J., Ramsay, M., Green, J.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 605 KB
english, 2007
163

DDBJ working on evaluation and classification of bacterial genes in INSDC

Sugawara, H., Abe, T., Gojobori, T., Tateno, Y.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 185 KB
english, 2007
165

PEDANT genome database: 10 years online

Riley, M. L., Schmidt, T., Artamonova, I. I., Wagner, C., Volz, A., Heumann, K., Mewes, H.-W., Frishman, D.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 1.39 MB
english, 2007
169

ECgene: an alternative splicing database update

Lee, Y., Lee, Y., Kim, B., Shin, Y., Nam, S., Kim, P., Kim, N., Chung, W.-H., Kim, J., Lee, S.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 864 KB
english, 2007
170

CellCircuits: a database of protein network models

Mak, H. C., Daly, M., Gruebel, B., Ideker, T.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 1.90 MB
english, 2007
171

GeneTrees: a phylogenomics resource for prokaryotes

Tian, Y., Dickerman, A. W.
Journal:
Nucleic Acids Research
Year:
2007
Language:
english
File:
PDF, 986 KB
english, 2007