Volume 36; Issue 1

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Nucleic Acids Research
Volume 36; Issue 1

Nucleic Acids Research

Volume 36; Issue 1

1

In situ oligonucleotide synthesis on carbon materials: stable substrates for microarray fabrication

Phillips, M. F., Lockett, M. R., Rodesch, M. J., Shortreed, M. R., Cerrina, F., Smith, L. M.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.35 MB

english, 2007

2

The process of displacing the single-stranded DNA-binding protein from single-stranded DNA by RecO and RecR proteins

Inoue, J., Honda, M., Ikawa, S., Shibata, T., Mikawa, T.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 13.50 MB

english, 2007

3

Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae

Hershman, S. G., Chen, Q., Lee, J. Y., Kozak, M. L., Yue, P., Wang, L.-S., Johnson, F. B.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.62 MB

english, 2007

4

The presence of the TAR RNA structure alters the programmed -1 ribosomal frameshift efficiency of the human immunodeficiency virus type 1 (HIV-1) by modifying the rate of translation initiation

Gendron, K., Charbonneau, J., Dulude, D., Heveker, N., Ferbeyre, G., Brakier-Gingras, L.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.04 MB

english, 2007

5

The translation of recombinant proteins in E. coli can be improved by in silico generating and screening random libraries of a -70/+96 mRNA region with respect to the translation initiation codon

Care, S., Bignon, C., Pelissier, M. C., Blanc, E., Canard, B., Coutard, B.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.44 MB

english, 2007

6

SUMO1 negatively regulates BRCA1-mediated transcription, via modulation of promoter occupancy

Park, M. A., Seok, Y.-J., Jeong, G., Lee, J.-S.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.67 MB

english, 2007

7

Mutation of the arginine finger in the active site of Escherichia coli DbpA abolishes ATPase and helicase activity and confers a dominant slow growth phenotype

Elles, L. M. S., Uhlenbeck, O. C.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 660 KB

english, 2007

8

Recombineering with tolC as a Selectable/Counter-selectable Marker: remodeling the rRNA Operons of Escherichia coli

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.36 MB

english, 2007

9

RNA secondary structure regulates the translation of sxy and competence development in Haemophilus influenzae

Cameron, A. D.S., Volar, M., Bannister, L. A., Redfield, R. J.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.85 MB

english, 2007

10

Measurement of the salt-dependent stabilization of partially open DNA by Escherichia coli SSB protein

Hatch, K., Danilowicz, C., Coljee, V., Prentiss, M.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 328 KB

english, 2007

11

Two RNA editing sites with cis-acting elements of moderate sequence identity are recognized by an identical site-recognition protein in tobacco chloroplasts

Kobayashi, Y., Matsuo, M., Sakamoto, K., Wakasugi, T., Yamada, K., Obokata, J.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.55 MB

english, 2007

12

Protein evolution by hypermutation and selection in the B cell line DT40

Arakawa, H., Kudo, H., Batrak, V., Caldwell, R. B., Rieger, M. A., Ellwart, J. W., Buerstedde, J.-M.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.66 MB

english, 2007

13

Mechanisms of primary and secondary estrogen target gene regulation in breast cancer cells

Bourdeau, V., Deschenes, J., Laperriere, D., Aid, M., White, J. H., Mader, S.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 502 KB

english, 2007

14

SMAD3 prevents binding of NKX2.1 and FOXA1 to the SpB promoter through its MH1 and MH2 domains

Minoo, P., Hu, L., Zhu, N., Borok, Z., Bellusci, S., Groffen, J., Kardassis, D., Li, C.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 848 KB

english, 2007

15

Incorporation of extracellular 8-oxodG into DNA and RNA requires purine nucleoside phosphorylase in MCF-7 cells

Mundt, J. M., Hah, S. S., Sumbad, R. A., Schramm, V., Henderson, P. T.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 283 KB

english, 2007

16

Ex vivo correction of selenoprotein N deficiency in rigid spine muscular dystrophy caused by a mutation in the selenocysteine codon

Rederstorff, M., Allamand, V., Guicheney, P., Gartioux, C., Richard, P., Chaigne, D., Krol, A., Lescure, A.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.38 MB

english, 2007

17

Mapping the phase diagram of the writhe of DNA nanocircles using atomistic molecular dynamics simulations

Harris, S. A., Laughton, C. A., Liverpool, T. B.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 3.93 MB

english, 2007

18

Elk1 and SRF transcription factors convey basal transcription and mediate glucose response via their binding sites in the human LXRB gene promoter

Nilsson, M., Dahlman-Wright, K., Karelmo, C., Ebeling, M., Gustafsson, J.-A., Steffensen, K. R.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 35 KB

english, 2007

19

Nuclear receptor interaction protein, a coactivator of androgen receptors (AR), is regulated by AR and Sp1 to feed forward and activate its own gene expression through AR protein stability

Chen, P.-H., Tsao, Y.-P., Wang, C.-C., Chen, S.-L.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.35 MB

english, 2007

20

Comprehensive viral oligonucleotide probe design using conserved protein regions

Jabado, O. J., Liu, Y., Conlan, S., Quan, P. L., Hegyi, H., Lussier, Y., Briese, T., Palacios, G., Lipkin, W. I.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 481 KB

english, 2007

21

The RNA polymerase factory: a robotic in vitro assembly platform for high-throughput production of recombinant protein complexes

Nottebaum, S., Tan, L., Trzaska, D., Carney, H. C., Weinzierl, R. O. J.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 861 KB

english, 2007

22

Unconventional GIY-YIG homing endonuclease encoded in group I introns in closely related strains of the Bacillus cereus group

Nord, D., Sjoberg, B.-M.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.49 MB

english, 2007

23

Roles for TbDSS-1 in RNA surveillance and decay of maturation by-products from the 12S rRNA locus

Mattiacio, J. L., Read, L. K.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 5.25 MB

english, 2007

24

Dehydration, deamination and enzymatic repair of cytosine glycols from oxidized poly(dG-dC) and poly(dI-dC)

Tremblay, S., Wagner, J. R.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 174 KB

english, 2007

25

Dynamic structures of Bacillus subtilis RecN-DNA complexes

Sanchez, H., Cardenas, P. P., Yoshimura, S. H., Takeyasu, K., Alonso, J. C.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 11.94 MB

english, 2007

26

Mismatch Repair proteins are recruited to replicating DNA through interaction with Proliferating Cell Nuclear Antigen (PCNA)

Masih, P. J., Kunnev, D., Melendy, T.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.85 MB

english, 2007

27

siRNA nanoformulation against the Ret/PTC1 junction oncogene is efficient in an in vivo model of papillary thyroid carcinoma

de Martimprey, H., Bertrand, J.-R., Fusco, A., Santoro, M., Couvreur, P., Vauthier, C., Malvy, C.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 5.71 MB

english, 2007

28

Activation of DNA strand exchange by cationic comb-type copolymers: effect of cationic moieties of the copolymers

Choi, S. W., Kano, A., Maruyama, A.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 534 KB

english, 2007

29

The ERCC1/XPF endonuclease is required for efficient single-strand annealing and gene conversion in mammalian cells

Al-Minawi, A. Z., Saleh-Gohari, N., Helleday, T.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.07 MB

english, 2007

30

The C-terminal domain of Escherichia coli Hfq is required for regulation

Vecerek, B., Rajkowitsch, L., Sonnleitner, E., Schroeder, R., Blasi, U.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.65 MB

english, 2007

31

From micrograms to picograms: quantitative PCR reduces the material demands of high-throughput sequencing

Meyer, M., Briggs, A. W., Maricic, T., Hober, B., Hoffner, B., Krause, J., Weihmann, A., Paabo, S., Hofreiter, M.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.81 MB

english, 2007

32

Identification of functional domains in Arabidopsis thaliana mRNA decapping enzyme (AtDcp2)

Gunawardana, D., Cheng, H.-C., Gayler, K. R.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 7.54 MB

english, 2007

33

Genome wide screens in yeast to identify potential binding sites and target genes of DNA-binding proteins

Zeng, J., Yan, J., Wang, T., Mosbrook-Davis, D., Dolan, K. T., Christensen, R., Stormo, G. D., Haussler, D., Lathrop, R. H., Brachmann, R. K., Burgess, S. M.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 3.10 MB

english, 2007

34

Site-specific recombination in Schizosaccharomyces pombe and systematic assembly of a 400kb transgene array in mammalian cells using the integrase of Streptomyces phage BT1

Xu, Z., Lee, N. C. O., Dafhnis-Calas, F., Malla, S., Smith, M. C. M., Brown, W. R. A.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.06 MB

english, 2007

35

DNA oligonucleotides with A, T, G or C opposite an abasic site: structure and dynamics

Chen, J., Dupradeau, F.-Y., Case, D. A., Turner, C. J., Stubbe, J.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 4.37 MB

english, 2007