Volume 36; Issue 22

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Nucleic Acids Research
Volume 36; Issue 22

Nucleic Acids Research

Volume 36; Issue 22

1

Properties of pseudo-complementary DNA substituted with weakly pairing analogs of guanine or cytosine

Lahoud, G., Timoshchuk, V., Lebedev, A., Arar, K., Hou, Y.-M., Gamper, H.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 1.96 MB

english, 2008

2

Depurination within the intergenic region of Brome mosaic virus RNA3 inhibits viral replication in vitro and in vivo

Karran, R. A., Hudak, K. A.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 375 KB

english, 2008

3

Nucleic Acids Research

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 55 KB

english, 2008

4

Identification and recovery of minor HIV-1 variants using the heteroduplex tracking assay and biotinylated probes

Schnell, G., Ince, W. L., Swanstrom, R.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 1.82 MB

english, 2008

5

Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes

Suzuki, H., Sota, M., Brown, C. J., Top, E. M.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 179 KB

english, 2008

6

A novel procedure for genotyping of single nucleotide polymorphisms in trisomy with genomic DNA and the invader assay

Duffy, K. J., Littrell, J., Locke, A., Sherman, S. L., Olivier, M.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 1.09 MB

english, 2008

7

A novel method to generate unmarked gene deletions in the intracellular pathogen Rhodococcus equi using 5-fluorocytosine conditional lethality

van der Geize, R., de Jong, W., Hessels, G. I., Grommen, A. W. F., Jacobs, A. A. C., Dijkhuizen, L.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 3.86 MB

english, 2008

8

A whole-genome approach to identifying protein binding sites: promoters in Methanocaldococcus (Methanococcus) jannaschii

Li, E., Reich, C. I., Olsen, G. J.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 717 KB

english, 2008

9

Editorial

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 70 KB

english, 2008

10

In vitro initial attachment of HIV-1 integrase to viral ends: control of the DNA specific interaction by the oligomerization state

Lesbats, P., Metifiot, M., Calmels, C., Baranova, S., Nevinsky, G., Andreola, M. L., Parissi, V.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 1.08 MB

english, 2008

11

Proteome-wide identification of poly(ADP-ribose) binding proteins and poly(ADP-ribose)-associated protein complexes

Gagne, J.-P., Isabelle, M., Lo, K. S., Bourassa, S., Hendzel, M. J., Dawson, V. L., Dawson, T. M., Poirier, G. G.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 11.71 MB

english, 2008

12

Small non-coding RNAs in Streptomyces coelicolor

Swiercz, J. P., Hindra,, Bobek, J., Haiser, H. J., Di Berardo, C., Tjaden, B., Elliot, M. A.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 1.76 MB

english, 2008

13

Functional characterization of alternatively spliced human SECISBP2 transcript variants

Papp, L. V., Wang, J., Kennedy, D., Boucher, D., Zhang, Y., Gladyshev, V. N., Singh, R. N., Khanna, K. K.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 2.21 MB

english, 2008

14

Orientation-dependent interaction between Drosophila insulators is a property of this class of regulatory elements

Kyrchanova, O., Chetverina, D., Maksimenko, O., Kullyev, A., Georgiev, P.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 3.85 MB

english, 2008

15

Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis

Schoning, J. C., Streitner, C., Meyer, I. M., Gao, Y., Staiger, D.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 3.44 MB

english, 2008

16

Structural and functional characterization of the LldR from Corynebacterium glutamicum: a transcriptional repressor involved in L-lactate and sugar utilization

Gao, Y.-G., Suzuki, H., Itou, H., Zhou, Y., Tanaka, Y., Wachi, M., Watanabe, N., Tanaka, I., Yao, M.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 9.58 MB

english, 2008

17

Rolling circle amplification-mediated hairpin RNA (RMHR) library construction in plants

Wang, L., Luo, Y.-Z., Zhang, L., Jiao, X.-M., Wang, M.-B., Fan, Y.-L.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 2.76 MB

english, 2008

18

RecG interacts directly with SSB: implications for stalled replication fork regression

Buss, J. A., Kimura, Y., Bianco, P. R.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 3.76 MB

english, 2008

19

Reinitiated viral RNA-dependent RNA polymerase resumes replication at a reduced rate

Vilfan, I. D., Candelli, A., Hage, S., Aalto, A. P., Poranen, M. M., Bamford, D. H., Dekker, N. H.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 6.21 MB

english, 2008

20

Errors in the bisulfite conversion of DNA: modulating inappropriate- and failed-conversion frequencies

Genereux, D. P., Johnson, W. C., Burden, A. F., Stoger, R., Laird, C. D.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 4.63 MB

english, 2008

21

Induction of PPM1D following DNA-damaging treatments through a conserved p53 response element coincides with a shift in the use of transcription initiation sites

Rossi, M., Demidov, O. N., Anderson, C. W., Appella, E., Mazur, S. J.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 483 KB

english, 2008

22

A diversity of uncharacterized reverse transcriptases in bacteria

Simon, D. M., Zimmerly, S.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 8.45 MB

english, 2008

23

Common physical basis of macromolecule-binding sites in proteins

Chen, Y. C., Lim, C.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 1.36 MB

english, 2008

24

Efficient processing of TFO-directed psoralen DNA interstrand crosslinks by the UvrABC nuclease

Christensen, L. A., Wang, H., Van Houten, B., Vasquez, K. M.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 2.08 MB

english, 2008

25

Exploring TAR-RNA aptamer loop-loop interaction by X-ray crystallography, UV spectroscopy and surface plasmon resonance

Lebars, I., Legrand, P., Aime, A., Pinaud, N., Fribourg, S., Di Primo, C.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 8.21 MB

english, 2008

26

A NMR strategy to unambiguously distinguish nucleic acid hairpin and duplex conformations applied to a Xist RNA A-repeat

Duszczyk, M. M., Zanier, K., Sattler, M.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 575 KB

english, 2008

27

Synapsis and catalysis by activated Tn3 resolvase mutants

Olorunniji, F. J., He, J., Wenwieser, S. V.C.T., Boocock, M. R., Stark, W. M.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 5.62 MB

english, 2008

28

Thermodynamic stability and Watson-Crick base pairing in the seed duplex are major determinants of the efficiency of the siRNA-based off-target effect

Ui-Tei, K., Naito, Y., Nishi, K., Juni, A., Saigo, K.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 13.24 MB

english, 2008

29

Highly individual methylation patterns of alternative glucocorticoid receptor promoters suggest individualized epigenetic regulatory mechanisms

Turner, J. D., Pelascini, L. P. L., Macedo, J. A., Muller, C. P.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 1.36 MB

english, 2008

30

A cytoplasmic variant of the KH-type splicing regulatory protein serves as a decay-promoting factor for phosphoglycerate kinase 2 mRNA in murine male germ cells

Xu, M., McCarrey, J. R., Hecht, N. B.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 7.97 MB

english, 2008

31

Recognition of a common rDNA target site in archaea and eukarya by analogous LAGLIDADG and His-Cys box homing endonucleases

Nomura, N., Nomura, Y., Sussman, D., Klein, D., Stoddard, B. L.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 7.71 MB

english, 2008