Volume 36; Issue 8

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Nucleic Acids Research
Volume 36; Issue 8

Nucleic Acids Research

Volume 36; Issue 8

1

The relationship of potential G-quadruplex sequences in cis-upstream regions of the human genome to SP1-binding elements

Todd, A. K., Neidle, S.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 129 KB

english, 2008

2

The small RNA GlmY acts upstream of the sRNA GlmZ in the activation of glmS expression and is subject to regulation by polyadenylation in Escherichia coli

Reichenbach, B., Maes, A., Kalamorz, F., Hajnsdorf, E., Gorke, B.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 4.95 MB

english, 2008

3

Dissecting protein-RNA recognition sites

Bahadur, R. P., Zacharias, M., Janin, J.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 2.17 MB

english, 2008

4

Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis

Jochl, C., Rederstorff, M., Hertel, J., Stadler, P. F., Hofacker, I. L., Schrettl, M., Haas, H., Huttenhofer, A.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 3.88 MB

english, 2008

5

Distinct roles of XRCC4 and Ku80 in non-homologous end-joining of endonuclease- and ionizing radiation-induced DNA double-strand breaks

Schulte-Uentrop, L., El-Awady, R. A., Schliecker, L., Willers, H., Dahm-Daphi, J.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 187 KB

english, 2008

6

A dual-tag microarray platform for high-performance nucleic acid and protein analyses

Ericsson, O., Jarvius, J., Schallmeiner, E., Howell, M., Nong, R. Y., Reuter, H., Hahn, M., Stenberg, J., Nilsson, M., Landegren, U.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 3.36 MB

english, 2008

7

The bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates

Kondo, J., Westhof, E.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 11.49 MB

english, 2008

8

Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses

Simmonds, P., Karakasiliotis, I., Bailey, D., Chaudhry, Y., Evans, D. J., Goodfellow, I. G.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 14.82 MB

english, 2008

9

Molecular dissection of Penelope transposable element regulatory machinery

Schostak, N., Pyatkov, K., Zelentsova, E., Arkhipova, I., Shagin, D., Shagina, I., Mudrik, E., Blintsov, A., Clark, I., Finnegan, D. J., Evgen'ev, M.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 1.15 MB

english, 2008

10

Structure of the DNA-binding domain of NgTRF1 reveals unique features of plant telomere-binding proteins

Ko, S., Jun, S.-H., Bae, H., Byun, J.-S., Han, W., Park, H., Yang, S. W., Park, S.-Y., Jeon, Y. H., Cheong, C., Kim, W. T., Lee, W., Cho, H.-S.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 9.41 MB

english, 2008

11

Human abasic endonuclease action on multilesion abasic clusters: implications for radiation-induced biological damage

Paap, B., Wilson, D. M., Sutherland, B. M.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 1.09 MB

english, 2008

12

Step-wise formation of eukaryotic double-row polyribosomes and circular translation of polysomal mRNA

Kopeina, G. S., Afonina, Z. A., Gromova, K. V., Shirokov, V. A., Vasiliev, V. D., Spirin, A. S.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 9.83 MB

english, 2008

13

A new kinetic model reveals the synergistic effect of E-, P- and A-sites on +1 ribosomal frameshifting

Liao, P.-Y., Gupta, P., Petrov, A. N., Dinman, J. D., Lee, K. H.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 7.89 MB

english, 2008

14

A space-efficient and accurate method for mapping and aligning cDNA sequences onto genomic sequence

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 189 KB

english, 2008

15

Single-molecule manipulation reveals supercoiling-dependent modulation of lac repressor-mediated DNA looping

Normanno, D., Vanzi, F., Pavone, F. S.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 3.65 MB

english, 2008

16

Transforming growth factor- -regulated miR-24 promotes skeletal muscle differentiation

Sun, Q., Zhang, Y., Yang, G., Chen, X., Zhang, Y., Cao, G., Wang, J., Sun, Y., Zhang, P., Fan, M., Shao, N., Yang, X.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 1004 KB

english, 2008

17

Detecting cis-regulatory binding sites for cooperatively binding proteins

van Oeffelen, L., Cornelis, P., Van Delm, W., De Ridder, F., De Moor, B., Moreau, Y.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 1.17 MB

english, 2008

18

Real-time kinetics of restriction-modification gene expression after entry into a new host cell

Mruk, I., Blumenthal, R. M.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 545 KB

english, 2008

19

Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs

Muller, S., Leclerc, F., Behm-Ansmant, I., Fourmann, J.-B., Charpentier, B., Branlant, C.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 5.54 MB

english, 2008

20

Recognition of tRNALeu by Aquifex aeolicus leucyl-tRNA synthetase during the aminoacylation and editing steps

Yao, P., Zhu, B., Jaeger, S., Eriani, G., Wang, E.-D.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 8.23 MB

english, 2008

21

Mitogen-induced recruitment of ERK and MSK to SRE promoter complexes by ternary complex factor Elk-1

Zhang, H.-M., Li, L., Papadopoulou, N., Hodgson, G., Evans, E., Galbraith, M., Dear, M., Vougier, S., Saxton, J., Shaw, P. E.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 8.15 MB

english, 2008

22

Structural probing of the HIV-1 polypurine tract RNA:DNA hybrid using classic nucleic acid ligands

Turner, K. B., Brinson, R. G., Yi-Brunozzi, H. Y., Rausch, J. W., Miller, J. T., Le Grice, S. F.J., Marino, J. P., Fabris, D.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 2.70 MB

english, 2008

23

A BBP-Mud2p heterodimer mediates branchpoint recognition and influences splicing substrate abundance in budding yeast

Wang, Q., Zhang, L., Lynn, B., Rymond, B. C.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 2.01 MB

english, 2008

24

Evolution of acceptor stem tRNA recognition by class II prolyl-tRNA synthetase

An, S., Barany, G., Musier-Forsyth, K.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 708 KB

english, 2008

25

Determinants of a transcriptionally competent environment at the GM-CSF promoter

Brettingham-Moore, K. H., Sprod, O. R., Chen, X., Oakford, P., Shannon, M. F., Holloway, A. F.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 392 KB

english, 2008

26

The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site

Tharakaraman, K., Bodenreider, O., Landsman, D., Spouge, J. L., Marino-Ramirez, L.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 5.94 MB

english, 2008

27

Exalign: a new method for comparative analysis of exon-intron gene structures

Pavesi, G., Zambelli, F., Caggese, C., Pesole, G.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 4.86 MB

english, 2008

28

Sequence homology and microhomology dominate chromosomal double-strand break repair in African trypanosomes

Glover, L., McCulloch, R., Horn, D.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 5.92 MB

english, 2008