Volume 38; Issue 17

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Nucleic Acids Research
Volume 38; Issue 17

Nucleic Acids Research

Volume 38; Issue 17

1

Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma

Schulte, J. H., Marschall, T., Martin, M., Rosenstiel, P., Mestdagh, P., Schlierf, S., Thor, T., Vandesompele, J., Eggert, A., Schreiber, S., Rahmann, S., Schramm, A.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 304 KB

english, 2010

2

Pushing the limits of what is achievable in protein-DNA docking: benchmarking HADDOCK's performance

van Dijk, M., Bonvin, A. M. J. J.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 3.47 MB

english, 2010

3

The non-coding RNA TERRA is a natural ligand and direct inhibitor of human telomerase

Redon, S., Reichenbach, P., Lingner, J.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 4.45 MB

english, 2010

4

A two-parameter generalized Poisson model to improve the analysis of RNA-seq data

Srivastava, S., Chen, L.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 514 KB

english, 2010

5

Direct measurements of the nucleosome-forming preferences of periodic DNA motifs challenge established models

Takasuka, T. E., Stein, A.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 1.83 MB

english, 2010

6

Cation-dependent cleavage of the duplex form of the subtype-B HIV-1 RNA dimerization initiation site

Ennifar, E., Walter, P., Dumas, P.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 9.30 MB

english, 2010

7

Aldosterone and vasopressin affect - and -ENaC mRNA translation

Perlewitz, A., Nafz, B., Skalweit, A., Fahling, M., Persson, P. B., Thiele, B.-J.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 6.17 MB

english, 2010

8

Microarray-based STR genotyping using RecA-mediated ligation

Herrmann, D., Rose, E., Muller, U., Wagner, R.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 4.33 MB

english, 2010

9

Synthesis-dependent microhomology-mediated end joining accounts for multiple types of repair junctions

Yu, A. M., McVey, M.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 8.49 MB

english, 2010

10

Nucleic Acids Research: VOLUME 38 ISSUE 17 2010

Journal:

Nucleic Acids Research

Year:

2010

File:

PDF, 441 KB

2010

11

Recognition and discrimination of target mRNAs by Sib RNAs, a cis-encoded sRNA family

Han, K., Kim, K.-s., Bak, G., Park, H., Lee, Y.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 1.48 MB

english, 2010

12

Metnase promotes restart and repair of stalled and collapsed replication forks

De Haro, L. P., Wray, J., Williamson, E. A., Durant, S. T., Corwin, L., Gentry, A. C., Osheroff, N., Lee, S.-H., Hromas, R., Nickoloff, J. A.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 5.45 MB

english, 2010

13

Subscriptions

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 47 KB

english, 2010

14

Mathematical modelling of whole chromosome replication

de Moura, A. P. S., Retkute, R., Hawkins, M., Nieduszynski, C. A.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 534 KB

english, 2010

15

Quantitative analysis of conditional gene inactivation using rationally designed, tetracycline-controlled miRNAs

Berger, S. M., Pesold, B., Reber, S., Schonig, K., Berger, A. J., Weidenfeld, I., Miao, J., Berger, M. R., Gruss, O. J., Bartsch, D.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 5.29 MB

english, 2010

16

The archaeal transamidosome for RNA-dependent glutamine biosynthesis

Rampias, T., Sheppard, K., Soll, D.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 2.63 MB

english, 2010

17

A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing

Cantacessi, C., Jex, A. R., Hall, R. S., Young, N. D., Campbell, B. E., Joachim, A., Nolan, M. J., Abubucker, S., Sternberg, P. W., Ranganathan, S., Mitreva, M., Gasser, R. B.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 174 KB

english, 2010

18

Rapid decay of unstable Leishmania mRNAs bearing a conserved retroposon signature 3'-UTR motif is initiated by a site-specific endonucleolytic cleavage without prior deadenylation

Muller, M., Padmanabhan, P. K., Rochette, A., Mukherjee, D., Smith, M., Dumas, C., Papadopoulou, B.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 1.82 MB

english, 2010

19

tRNASec is transcribed by RNA polymerase II in Trypanosoma brucei but not in humans

Aeby, E., Ullu, E., Yepiskoposyan, H., Schimanski, B., Roditi, I., Muhlemann, O., Schneider, A.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 4.57 MB

english, 2010

20

Incorporation of pseudouridine into mRNA enhances translation by diminishing PKR activation

Anderson, B. R., Muramatsu, H., Nallagatla, S. R., Bevilacqua, P. C., Sansing, L. H., Weissman, D., Kariko, K.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 1.92 MB

english, 2010

21

siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis

Yu, B., Bi, L., Zhai, J., Agarwal, M., Li, S., Wu, Q., Ding, S.-W., Meyers, B. C., Vaucheret, H., Chen, X.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 6.40 MB

english, 2010

22

The mechanism and control of DNA transfer by the conjugative relaxase of resistance plasmid pCU1

Nash, R. P., Habibi, S., Cheng, Y., Lujan, S. A., Redinbo, M. R.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 5.05 MB

english, 2010

23

A small nucleolar RNA functions in rRNA processing in Caenorhabditis elegans

Hokii, Y., Sasano, Y., Sato, M., Sakamoto, H., Sakata, K., Shingai, R., Taneda, A., Oka, S., Himeno, H., Muto, A., Fujiwara, T., Ushida, C.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 9.05 MB

english, 2010

24

InTERTpreting telomerase structure and function

Wyatt, H. D. M., West, S. C., Beattie, T. L.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 3.38 MB

english, 2010

25

A novel single-stranded DNA-specific 3'-5' exonuclease, Thermus thermophilus exonuclease I, is involved in several DNA repair pathways

Shimada, A., Masui, R., Nakagawa, N., Takahata, Y., Kim, K., Kuramitsu, S., Fukui, K.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 7.57 MB

english, 2010

26

A screen of chemical modifications identifies position-specific modification by UNA to most potently reduce siRNA off-target effects

Bramsen, J. B., Pakula, M. M., Hansen, T. B., Bus, C., Langkjaer, N., Odadzic, D., Smicius, R., Wengel, S. L., Chattopadhyaya, J., Engels, J. W., Herdewijn, P., Wengel, J., Kjems, J.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 5.11 MB

english, 2010

27

Requirements for catalysis in the Cre recombinase active site

Gibb, B., Gupta, K., Ghosh, K., Sharp, R., Chen, J., Van Duyne, G. D.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 2.57 MB

english, 2010

28

Nucleic Acids Research

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 50 KB

english, 2010

29

Genome-wide DNA methylation analysis in cohesin mutant human cell lines

Liu, J., Zhang, Z., Bando, M., Itoh, T., Deardorff, M. A., Li, J. R., Clark, D., Kaur, M., Tatsuro, K., Kline, A. D., Chang, C., Vega, H., Jackson, L. G., Spinner, N. B., Shirahige, K., Krantz, I. D.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 1.99 MB

english, 2010

30

Rank-rank hypergeometric overlap: identification of statistically significant overlap between gene-expression signatures

Plaisier, S. B., Taschereau, R., Wong, J. A., Graeber, T. G.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 9.74 MB

english, 2010

31

Experimental identification and characterization of 97 novel npcRNA candidates in Salmonella enterica serovar Typhi

Chinni, S. V., Raabe, C. A., Zakaria, R., Randau, G., Hoe, C. H., Zemann, A., Brosius, J., Tang, T.-H., Rozhdestvensky, T. S.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 5.70 MB

english, 2010

32

Multiple roles of the RNA polymerase ' SW2 region in transcription initiation, promoter escape, and RNA elongation

Pupov, D., Miropolskaya, N., Sevostyanova, A., Bass, I., Artsimovitch, I., Kulbachinskiy, A.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 9.43 MB

english, 2010

33

Recognition of tRNAGln by Helicobacter pylori GluRS2--a tRNAGln-specific glutamyl-tRNA synthetase

Chang, K.-M., Hendrickson, T. L.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 36 KB

english, 2010