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Volume 38; Issue 21
Main
Nucleic Acids Research
Volume 38; Issue 21
Nucleic Acids Research
Volume 38; Issue 21
1
Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies
Zagordi, O.
,
Klein, R.
,
Daumer, M.
,
Beerenwinkel, N.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 2.12 MB
Your tags:
english, 2010
2
Conformational plasticity of RNA for target recognition as revealed by the 2.15 A crystal structure of a human IgG-aptamer complex
Nomura, Y.
,
Sugiyama, S.
,
Sakamoto, T.
,
Miyakawa, S.
,
Adachi, H.
,
Takano, K.
,
Murakami, S.
,
Inoue, T.
,
Mori, Y.
,
Nakamura, Y.
,
Matsumura, H.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 5.33 MB
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english, 2010
3
Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics
Timmermans, M. J. T. N.
,
Dodsworth, S.
,
Culverwell, C. L.
,
Bocak, L.
,
Ahrens, D.
,
Littlewood, D. T. J.
,
Pons, J.
,
Vogler, A. P.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 1.47 MB
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english, 2010
4
Targeted rapid amplification of cDNA ends (T-RACE)--an improved RACE reaction through degradation of non-target sequences
Bower, N. I.
,
Johnston, I. A.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 421 KB
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english, 2010
5
How long is too long? Effects of loop size on G-quadruplex stability
Guedin, A.
,
Gros, J.
,
Alberti, P.
,
Mergny, J.-L.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 9.05 MB
Your tags:
english, 2010
6
The role of transcription factories-mediated interchromosomal contacts in the organization of nuclear architecture
Dorier, J.
,
Stasiak, A.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 12.72 MB
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english, 2010
7
DNA compaction by the higher-order assembly of PRH/Hex homeodomain protein oligomers
Soufi, A.
,
Sawasdichai, A.
,
Shukla, A.
,
Noy, P.
,
Dafforn, T.
,
Smith, C.
,
Jayaraman, P.-S.
,
Gaston, K.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 3.72 MB
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english, 2010
8
By-passing in vitro screening--next generation sequencing technologies applied to antibody display and in silico candidate selection
Ravn, U.
,
Gueneau, F.
,
Baerlocher, L.
,
Osteras, M.
,
Desmurs, M.
,
Malinge, P.
,
Magistrelli, G.
,
Farinelli, L.
,
Kosco-Vilbois, M. H.
,
Fischer, N.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 346 KB
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english, 2010
9
Hybridization properties of long nucleic acid probes for detection of variable target sequences, and development of a hybridization prediction algorithm
Ohrmalm, C.
,
Jobs, M.
,
Eriksson, R.
,
Golbob, S.
,
Elfaitouri, A.
,
Benachenhou, F.
,
Stromme, M.
,
Blomberg, J.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 653 KB
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english, 2010
10
PARP1 suppresses homologous recombination events in mice in vivo
Claybon, A.
,
Karia, B.
,
Bruce, C.
,
Bishop, A. J. R.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 3.36 MB
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english, 2010
11
Novel regulatory cascades controlling expression of nitrogen-fixation genes in Geobacter sulfurreducens
Ueki, T.
,
Lovley, D. R.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 2.50 MB
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english, 2010
12
Involvement of argonaute proteins in gene silencing and activation by RNAs complementary to a non-coding transcript at the progesterone receptor promoter
Chu, Y.
,
Yue, X.
,
Younger, S. T.
,
Janowski, B. A.
,
Corey, D. R.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 1.26 MB
Your tags:
english, 2010
13
SIRT1 is regulated by a PPAR -SIRT1 negative feedback loop associated with senescence
Han, L.
,
Zhou, R.
,
Niu, J.
,
McNutt, M. A.
,
Wang, P.
,
Tong, T.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 2.14 MB
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english, 2010
14
Single-stranded DNA catenation mediated by human EVL and a type I topoisomerase
Takaku, M.
,
Takahashi, D.
,
Machida, S.
,
Ueno, H.
,
Hosoya, N.
,
Ikawa, S.
,
Miyagawa, K.
,
Shibata, T.
,
Kurumizaka, H.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 5.87 MB
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english, 2010
15
Nucleic Acids Research: VOLUME 38 ISSUE 21 2010
Journal:
Nucleic Acids Research
Year:
2010
File:
PDF, 13.99 MB
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2010
16
A one-step method for quantitative determination of uracil in DNA by real-time PCR
Horvath, A.
,
Vertessy, B. G.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 1.57 MB
Your tags:
english, 2010
17
A molecular clamp ensures allosteric coordination of peptidyltransfer and ligand binding to the ribosomal A-site
Meskauskas, A.
,
Dinman, J. D.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 5.37 MB
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english, 2010
18
Dynamics of a novel centromeric histone variant CenH3 reveals the evolutionary ancestral timing of centromere biogenesis
Dubin, M.
,
Fuchs, J.
,
Graf, R.
,
Schubert, I.
,
Nellen, W.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 13.87 MB
Your tags:
english, 2010
19
A domain insertion in Escherichia coli GyrB adopts a novel fold that plays a critical role in gyrase function
Schoeffler, A. J.
,
May, A. P.
,
Berger, J. M.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 18.61 MB
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english, 2010
20
A novel role of CPEB3 in regulating EGFR gene transcription via association with Stat5b in neurons
Peng, S.-C.
,
Lai, Y.-T.
,
Huang, H.-Y.
,
Huang, H.-D.
,
Huang, Y.-S.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 2.62 MB
Your tags:
english, 2010
21
Chemical discrimination between dC and 5MedC via their hydroxylamine adducts
Munzel, M.
,
Lercher, L.
,
Muller, M.
,
Carell, T.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 4.33 MB
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english, 2010
22
Structure and function of the regulatory HRDC domain from human Bloom syndrome protein
Kim, Y. M.
,
Choi, B.-S.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 12.57 MB
Your tags:
english, 2010
23
Functional analysis of Thermus thermophilus transcription factor NusG
Sevostyanova, A.
,
Artsimovitch, I.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 9.85 MB
Your tags:
english, 2010
24
Deconstructing nucleotide binding activity of the Mdm2 RING domain
Priest, C.
,
Prives, C.
,
Poyurovsky, M. V.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 6.06 MB
Your tags:
english, 2010
25
The phosphatase interactor NIPP1 regulates the occupancy of the histone methyltransferase EZH2 at Polycomb targets
Van Dessel, N.
,
Beke, L.
,
Gornemann, J.
,
Minnebo, N.
,
Beullens, M.
,
Tanuma, N.
,
Shima, H.
,
Van Eynde, A.
,
Bollen, M.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 4.11 MB
Your tags:
english, 2010
26
Global regulation of alternative splicing during myogenic differentiation
Bland, C. S.
,
Wang, E. T.
,
Vu, A.
,
David, M. P.
,
Castle, J. C.
,
Johnson, J. M.
,
Burge, C. B.
,
Cooper, T. A.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 6.56 MB
Your tags:
english, 2010
27
Genomic analysis of codon, sequence and structural conservation with selective biochemical-structure mapping reveals highly conserved and dynamic structures in rotavirus RNAs with potential cis-acting functions
Li, W.
,
Manktelow, E.
,
von Kirchbach, J. C.
,
Gog, J. R.
,
Desselberger, U.
,
Lever, A. M.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 17.25 MB
Your tags:
english, 2010
28
Using protein design algorithms to understand the molecular basis of disease caused by protein-DNA interactions: the Pax6 example
Alibes, A.
,
Nadra, A. D.
,
De Masi, F.
,
Bulyk, M. L.
,
Serrano, L.
,
Stricher, F.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 3.05 MB
Your tags:
english, 2010
29
Nucleic Acids Research
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 51 KB
Your tags:
english, 2010
30
The three-dimensional architecture of Hox cluster silencing
Ferraiuolo, M. A.
,
Rousseau, M.
,
Miyamoto, C.
,
Shenker, S.
,
Wang, X. Q. D.
,
Nadler, M.
,
Blanchette, M.
,
Dostie, J.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 2.53 MB
Your tags:
english, 2010
31
Insights into the molecular determinants involved in cap recognition by the vaccinia virus D10 decapping enzyme
Souliere, M. F.
,
Perreault, J.-P.
,
Bisaillon, M.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 3.84 MB
Your tags:
english, 2010
32
Arrest of human mitochondrial RNA polymerase transcription by the biological aldehyde adduct of DNA, M1dG
Cline, S. D.
,
Lodeiro, M. F.
,
Marnett, L. J.
,
Cameron, C. E.
,
Arnold, J. J.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 2.42 MB
Your tags:
english, 2010
33
NMR structure of the let-7 miRNA interacting with the site LCS1 of lin-41 mRNA from Caenorhabditis elegans
Cevec, M.
,
Thibaudeau, C.
,
Plavec, J.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 4.69 MB
Your tags:
english, 2010
34
Genomic repertoires of DNA-binding transcription factors across the tree of life
Charoensawan, V.
,
Wilson, D.
,
Teichmann, S. A.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 2.46 MB
Your tags:
english, 2010
35
The Trypanosoma brucei MitoCarta and its regulation and splicing pattern during development
Zhang, X.
,
Cui, J.
,
Nilsson, D.
,
Gunasekera, K.
,
Chanfon, A.
,
Song, X.
,
Wang, H.
,
Xu, Y.
,
Ochsenreiter, T.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 4.15 MB
Your tags:
english, 2010
36
GAM/ZFp/ZNF512B is central to a gene sensor circuitry involving cell-cycle regulators, TGF effectors, Drosha and microRNAs with opposite oncogenic potentials
Tili, E.
,
Michaille, J.-J.
,
Liu, C.-G.
,
Alder, H.
,
Taccioli, C.
,
Volinia, S.
,
Calin, G. A.
,
Croce, C. M.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 5.20 MB
Your tags:
english, 2010
37
Plant mitochondria use two pathways for the biogenesis of tRNAHis
Placido, A.
,
Sieber, F.
,
Gobert, A.
,
Gallerani, R.
,
Giege, P.
,
Marechal-Drouard, L.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 1.62 MB
Your tags:
english, 2010
38
A model in vitro system for co-transcriptional splicing
Yu, Y.
,
Das, R.
,
Folco, E. G.
,
Reed, R.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 1.74 MB
Your tags:
english, 2010
39
CPEB2, CPEB3 and CPEB4 are coordinately regulated by miRNAs recognizing conserved binding sites in paralog positions of their 3'-UTRs
Morgan, M.
,
Iaconcig, A.
,
Muro, A. F.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 6.72 MB
Your tags:
english, 2010
40
The terminal loop region controls microRNA processing by Drosha and Dicer
Zhang, X.
,
Zeng, Y.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 11.29 MB
Your tags:
english, 2010
41
Characterization and prediction of protein nucleolar localization sequences
Scott, M. S.
,
Boisvert, F.-M.
,
McDowall, M. D.
,
Lamond, A. I.
,
Barton, G. J.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 4.76 MB
Your tags:
english, 2010
42
Crystal structure of the P2 C-repressor: a binder of non-palindromic direct DNA repeats
Massad, T.
,
Skaar, K.
,
Nilsson, H.
,
Damberg, P.
,
Henriksson-Peltola, P.
,
Haggard-Ljungquist, E.
,
Hogbom, M.
,
Stenmark, P.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 6.48 MB
Your tags:
english, 2010
43
Functional analysis of the SRV-1 RNA frameshifting pseudoknot
Olsthoorn, R. C. L.
,
Reumerman, R.
,
Hilbers, C. W.
,
Pleij, C. W. A.
,
Heus, H. A.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 1019 KB
Your tags:
english, 2010
44
Structural insights into the function of aminoglycoside-resistance A1408 16S rRNA methyltransferases from antibiotic-producing and human pathogenic bacteria
Macmaster, R.
,
Zelinskaya, N.
,
Savic, M.
,
Rankin, C. R.
,
Conn, G. L.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 5.48 MB
Your tags:
english, 2010
45
Synthesis and biological activity of artificial mRNA prepared with novel phosphorylating reagents
Nagata, S.
,
Hamasaki, T.
,
Uetake, K.
,
Masuda, H.
,
Takagaki, K.
,
Oka, N.
,
Wada, T.
,
Ohgi, T.
,
Yano, J.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 799 KB
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english, 2010
46
Issues in bioinformatics benchmarking: the case study of multiple sequence alignment
Aniba, M. R.
,
Poch, O.
,
Thompson, J. D.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 3.75 MB
Your tags:
english, 2010
47
The 68 kDa subunit of mammalian cleavage factor I interacts with the U7 small nuclear ribonucleoprotein and participates in 3'-end processing of animal histone mRNAs
Ruepp, M.-D.
,
Vivarelli, S.
,
Pillai, R. S.
,
Kleinschmidt, N.
,
Azzouz, T. N.
,
Barabino, S. M. L.
,
Schumperli, D.
Journal:
Nucleic Acids Research
Year:
2010
Language:
english
File:
PDF, 4.72 MB
Your tags:
english, 2010
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