Volume 38; Issue 7

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Nucleic Acids Research
Volume 38; Issue 7

Nucleic Acids Research

Volume 38; Issue 7

1

DNA supercoiling and its role in DNA decatenation and unknotting

Witz, G., Stasiak, A.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 8.98 MB

english, 2010

2

An RNA-based transcription activator derived from an inhibitory aptamer

Wang, S., Shepard, J. R. E., Shi, H.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 1.54 MB

english, 2010

3

A truncated DNA-damage-signaling response is activated after DSB formation in the G1 phase of Saccharomyces cerevisiae

Janke, R., Herzberg, K., Rolfsmeier, M., Mar, J., Bashkirov, V. I., Haghnazari, E., Cantin, G., Yates, J. R., Heyer, W. D.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 2.04 MB

english, 2010

4

The human telomeric protein hTRF1 induces telomere-specific nucleosome mobility

Pisano, S., Leoni, D., Galati, A., Rhodes, D., Savino, M., Cacchione, S.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 8.74 MB

english, 2010

5

Fluorescent probes for the analysis of DNA strand scission in base excision repair

Matsumoto, N., Toga, T., Hayashi, R., Sugasawa, K., Katayanagi, K., Ide, H., Kuraoka, I., Iwai, S.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 2.79 MB

english, 2010

6

Protein arginine methyltransferase 6 regulates multiple aspects of gene expression

Harrison, M. J., Tang, Y. H., Dowhan, D. H.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 1.18 MB

english, 2010

7

The ribosome assembly factor Nep1 responsible for Bowen-Conradi syndrome is a pseudouridine-N1-specific methyltransferase

Wurm, J. P., Meyer, B., Bahr, U., Held, M., Frolow, O., Kotter, P., Engels, J. W., Heckel, A., Karas, M., Entian, K. D., Wohnert, J.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 5.58 MB

english, 2010

8

A unified genetic, computational and experimental framework identifies functionally relevant residues of the homing endonuclease I-BmoI

Kleinstiver, B. P., Fernandes, A. D., Gloor, G. B., Edgell, D. R.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 9.14 MB

english, 2010

9

MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing

Goers, E. S., Purcell, J., Voelker, R. B., Gates, D. P., Berglund, J. A.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 1.84 MB

english, 2010

10

Differential stability of 2'F-ANARNA and ANARNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility

Watts, J. K., Martin-Pintado, N., Gomez-Pinto, I., Schwartzentruber, J., Portella, G., Orozco, M., Gonzalez, C., Damha, M. J.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 5.76 MB

english, 2010

11

A sensitive non-radioactive northern blot method to detect small RNAs

Kim, S. W., Li, Z., Moore, P. S., Monaghan, A. P., Chang, Y., Nichols, M., John, B.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 2.56 MB

english, 2010

12

Nucleic Acids Research

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 50 KB

english, 2010

13

Electrostatic hot spot on DNA-binding domains mediates phosphate desolvation and the pre-organization of specificity determinant side chains

Temiz, A. N., Benos, P. V., Camacho, C. J.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 2.56 MB

english, 2010

14

Functional cooperation between CREM and GCNF directs gene expression in haploid male germ cells

Rajkovic, M., Iwen, K. A. H., Hofmann, P. J., Harneit, A., Weitzel, J. M.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 4.82 MB

english, 2010

15

Zip nucleic acids are potent hydrolysis probes for quantitative PCR

Paris, C., Moreau, V., Deglane, G., Voirin, E., Erbacher, P., Lenne-Samuel, N.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 1.31 MB

english, 2010

16

Glycosylases and AP-cleaving enzymes as a general tool for probe-directed cleavage of ssDNA targets

Howell, W. M., Grundberg, I., Faryna, M., Landegren, U., Nilsson, M.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 4.67 MB

english, 2010

17

Yeast arginine methyltransferase Hmt1p regulates transcription elongation and termination by methylating Npl3p

Wong, C. M., Tang, H. M. V., Kong, K. Y. E., Wong, G. W. O., Qiu, H., Jin, D. Y., Hinnebusch, A. G.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 7.25 MB

english, 2010

18

RNPC1 modulates the RNA-binding activity of, and cooperates with, HuR to regulate p21 mRNA stability

Cho, S. J., Zhang, J., Chen, X.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 7.17 MB

english, 2010

19

Nucleic Acids Research: VOLUME 38 ISSUE 7 2010

Journal:

Nucleic Acids Research

Year:

2010

File:

PDF, 351 KB

2010

20

Homologous over-extension: a challenge for iterative similarity searches

Gonzalez, M. W., Pearson, W. R.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 400 KB

english, 2010

21

Estimating the proportion of microarray probes expressed in an RNA sample

Shi, W., de Graaf, C. A., Kinkel, S. A., Achtman, A. H., Baldwin, T., Schofield, L., Scott, H. S., Hilton, D. J., Smyth, G. K.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 939 KB

english, 2010

22

Waved aCGH: to smooth or not to smooth

Lepretre, F., Villenet, C., Quief, S., Nibourel, O., Jacquemin, C., Troussard, X., Jardin, F., Gibson, F., Kerckaert, J. P., Roumier, C., Figeac, M.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 6.65 MB

english, 2010

23

Genome-wide identification of hypoxia-inducible factor binding sites and target genes by a probabilistic model integrating transcription-profiling data and in silico binding site prediction

Ortiz-Barahona, A., Villar, D., Pescador, N., Amigo, J., del Peso, L.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 2.18 MB

english, 2010

24

Subscriptions

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 47 KB

english, 2010

25

Quality measures for protein alignment benchmarks

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 1.55 MB

english, 2010

26

Efficient integration of transgenes into a defined locus in human embryonic stem cells

Sakurai, K., Shimoji, M., Tahimic, C. G. T., Aiba, K., Kawase, E., Hasegawa, K., Amagai, Y., Suemori, H., Nakatsuji, N.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 8.50 MB

english, 2010

27

Custom human endogenous retroviruses dedicated microarray identifies self-induced HERV-W family elements reactivated in testicular cancer upon methylation control

Gimenez, J., Montgiraud, C., Pichon, J. P., Bonnaud, B., Arsac, M., Ruel, K., Bouton, O., Mallet, F.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 7.20 MB

english, 2010

28

DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model

Sperschneider, J., Datta, A.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 276 KB

english, 2010

29

Insight into the induction mechanism of the GntR/HutC bacterial transcription regulator YvoA

Resch, M., Schiltz, E., Titgemeyer, F., Muller, Y. A.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 5.38 MB

english, 2010

30

Streamlined determination of processive run length and mechanochemical coupling of nucleic acid motor activities

Gyimesi, M., Sarlos, K., Derenyi, I., Kovacs, M.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 2.06 MB

english, 2010

31

Analysis of the impact of a uracil DNA glycosylase attenuated in AP-DNA binding in maintenance of the genomic integrity in Escherichia coli

Bharti, S. K., Varshney, U.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 856 KB

english, 2010

32

Quadruplex structures of muscle gene promoter sequences enhance in vivo MyoD-dependent gene expression

Shklover, J., Weisman-Shomer, P., Yafe, A., Fry, M.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 2.48 MB

english, 2010

33

Differential coregulator requirements for function of the hematopoietic transcription factor GATA-1 at endogenous loci

Pope, N. J., Bresnick, E. H.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 938 KB

english, 2010

34

Incorporating sequence quality data into alignment improves DNA read mapping

Frith, M. C., Wan, R., Horton, P.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 265 KB

english, 2010

35

Anatomy of mouse recombination hot spots

Wu, Z. K., Getun, I. V., Bois, P. R. J.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 6.60 MB

english, 2010

36

A novel mechanism for the scission of double-stranded DNA: BfiI cuts both 3'-5' and 5'-3' strands by rotating a single active site

Sasnauskas, G., Zakrys, L., Zaremba, M., Cosstick, R., Gaynor, J. W., Halford, S. E., Siksnys, V.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 1.42 MB

english, 2010

37

Tfold: efficient in silico prediction of non-coding RNA secondary structures

Engelen, S., Tahi, F.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 5.88 MB

english, 2010

38

Genome comparison and context analysis reveals putative mobile forms of restriction-modification systems and related rearrangements

Furuta, Y., Abe, K., Kobayashi, I.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 4.80 MB

english, 2010

39

Location analysis for the estrogen receptor- reveals binding to diverse ERE sequences and widespread binding within repetitive DNA elements

Mason, C. E., Shu, F. J., Wang, C., Session, R. M., Kallen, R. G., Sidell, N., Yu, T., Liu, M. H., Cheung, E., Kallen, C. B.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 993 KB

english, 2010

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