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Volume 39; Issue 10
Main
Nucleic Acids Research
Volume 39; Issue 10
Nucleic Acids Research
Volume 39; Issue 10
1
Zn2+ selectively stabilizes FdU-substituted DNA through a unique major groove binding motif
Ghosh, S.
,
Salsbury, F. R.
,
Horita, D. A.
,
Gmeiner, W. H.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 7.00 MB
Your tags:
english, 2011
2
Homolog-specific PCR primer design for profiling splice variants
Srivastava, G. P.
,
Hanumappa, M.
,
Kushwaha, G.
,
Nguyen, H. T.
,
Xu, D.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 11.92 MB
Your tags:
english, 2011
3
WDHD1 modulates the post-transcriptional step of the centromeric silencing pathway
Hsieh, C.-L.
,
Lin, C.-L.
,
Liu, H.
,
Chang, Y.-J.
,
Shih, C.-J.
,
Zhong, C. Z.
,
Lee, S.-C.
,
Tan, B. C.-M.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 7.79 MB
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english, 2011
4
TEFM (c17orf42) is necessary for transcription of human mtDNA
Minczuk, M.
,
He, J.
,
Duch, A. M.
,
Ettema, T. J.
,
Chlebowski, A.
,
Dzionek, K.
,
Nijtmans, L. G. J.
,
Huynen, M. A.
,
Holt, I. J.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 6.74 MB
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english, 2011
5
NSrp70 is a novel nuclear speckle-related protein that modulates alternative pre-mRNA splicing in vivo
Kim, Y.-D.
,
Lee, J.-Y.
,
Oh, K.-M.
,
Araki, M.
,
Araki, K.
,
Yamamura, K.-i.
,
Jun, C.-D.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 10.87 MB
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english, 2011
6
Explaining the varied glycosidic conformational, G-tract length and sequence preferences for anti-parallel G-quadruplexes
Cang, X.
,
Sponer, J.
,
Cheatham, T. E.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 6.95 MB
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english, 2011
7
Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences
Ivanov, I. P.
,
Firth, A. E.
,
Michel, A. M.
,
Atkins, J. F.
,
Baranov, P. V.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 1.39 MB
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english, 2011
8
Detecting common copy number variants in high-throughput sequencing data by using JointSLM algorithm
Magi, A.
,
Benelli, M.
,
Yoon, S.
,
Roviello, F.
,
Torricelli, F.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 551 KB
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english, 2011
9
SyMAP v3.4: a turnkey synteny system with application to plant genomes
Soderlund, C.
,
Bomhoff, M.
,
Nelson, W. M.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 11.09 MB
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english, 2011
10
The histone H3K36 demethylase Rph1/KDM4 regulates the expression of the photoreactivation gene PHR1
Liang, C.-Y.
,
Hsu, P.-H.
,
Chou, D.-F.
,
Pan, C.-Y.
,
Wang, L.-C.
,
Huang, W.-C.
,
Tsai, M.-D.
,
Lo, W.-S.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 1.33 MB
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english, 2011
11
Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodelling
Bouhouche, K.
,
Gout, J.-F.
,
Kapusta, A.
,
Betermier, M.
,
Meyer, E.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 17.40 MB
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english, 2011
12
The MobM relaxase domain of plasmid pMV158: thermal stability and activity upon Mn2+ and specific DNA binding
Lorenzo-Diaz, F.
,
Dostal, L.
,
Coll, M.
,
Schildbach, J. F.
,
Menendez, M.
,
Espinosa, M.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 1.22 MB
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english, 2011
13
Subscriptions
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 49 KB
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english, 2011
14
ModeRNA: a tool for comparative modeling of RNA 3D structure
Rother, M.
,
Rother, K.
,
Puton, T.
,
Bujnicki, J. M.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 11.52 MB
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english, 2011
15
Nucleic Acids Research
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 58 KB
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english, 2011
16
Structure of p300 bound to MEF2 on DNA reveals a mechanism of enhanceosome assembly
He, J.
,
Ye, J.
,
Cai, Y.
,
Riquelme, C.
,
Liu, J. O.
,
Liu, X.
,
Han, A.
,
Chen, L.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 7.56 MB
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english, 2011
17
Controlled interplay between trigger loop and Gre factor in the RNA polymerase active centre
Roghanian, M.
,
Yuzenkova, Y.
,
Zenkin, N.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 5.12 MB
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english, 2011
18
Real-time detection of cruciform extrusion by single-molecule DNA nanomanipulation
Ramreddy, T.
,
Sachidanandam, R.
,
Strick, T. R.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 10.74 MB
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english, 2011
19
Structural and biochemical studies of human lysine methyltransferase Smyd3 reveal the important functional roles of its post-SET and TPR domains and the regulation of its activity by DNA binding
Xu, S.
,
Wu, J.
,
Sun, B.
,
Zhong, C.
,
Ding, J.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 9.83 MB
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english, 2011
20
Not1 mediates recruitment of the deadenylase Caf1 to mRNAs targeted for degradation by tristetraprolin
Sandler, H.
,
Kreth, J.
,
Timmers, H. T. M.
,
Stoecklin, G.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 7.08 MB
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english, 2011
21
PDGF induced microRNA alterations in cancer cells
Shao, M.
,
Rossi, S.
,
Chelladurai, B.
,
Shimizu, M.
,
Ntukogu, O.
,
Ivan, M.
,
Calin, G. A.
,
Matei, D.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 7.08 MB
Your tags:
english, 2011
22
The RNA annealing mechanism of the HIV-1 Tat peptide: conversion of the RNA into an annealing-competent conformation
Doetsch, M.
,
Furtig, B.
,
Gstrein, T.
,
Stampfl, S.
,
Schroeder, R.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 5.58 MB
Your tags:
english, 2011
23
TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees
Marcet-Houben, M.
,
Gabaldon, T.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 3.46 MB
Your tags:
english, 2011
24
Crystal structure of a DNA containing the planar, phenoxazine-derived bi-functional spectroscopic probe C
Edwards, T. E.
,
Cekan, P.
,
Reginsson, G. W.
,
Shelke, S. A.
,
Ferre-D'Amare, A. R.
,
Schiemann, O.
,
Sigurdsson, S. T.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 5.44 MB
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english, 2011
25
Prevention of cross-talk in conserved regulatory systems: identification of specificity determinants in RNA-binding anti-termination proteins of the BglG family
Hubner, S.
,
Declerck, N.
,
Diethmaier, C.
,
Le Coq, D.
,
Aymerich, S.
,
Stulke, J.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 2.31 MB
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english, 2011
26
The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages
Mraheil, M. A.
,
Billion, A.
,
Mohamed, W.
,
Mukherjee, K.
,
Kuenne, C.
,
Pischimarov, J.
,
Krawitz, C.
,
Retey, J.
,
Hartsch, T.
,
Chakraborty, T.
,
Hain, T.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 982 KB
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english, 2011
27
Hmo1 directs pre-initiation complex assembly to an appropriate site on its target gene promoters by masking a nucleosome-free region
Kasahara, K.
,
Ohyama, Y.
,
Kokubo, T.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 8.92 MB
Your tags:
english, 2011
28
Two forms of ribosomal protein L2 of Escherichia coli that inhibit DnaA in DNA replication
Chodavarapu, S.
,
Felczak, M. M.
,
Kaguni, J. M.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 1.42 MB
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english, 2011
29
Genome-wide quantitative assessment of variation in DNA methylation patterns
Xie, H.
,
Wang, M.
,
de Andrade, A.
,
Bonaldo, M. d. F.
,
Galat, V.
,
Arndt, K.
,
Rajaram, V.
,
Goldman, S.
,
Tomita, T.
,
Soares, M. B.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 1.41 MB
Your tags:
english, 2011
30
Evolution of linear chromosomes and multipartite genomes in yeast mitochondria
Valach, M.
,
Farkas, Z.
,
Fricova, D.
,
Kovac, J.
,
Brejova, B.
,
Vinar, T.
,
Pfeiffer, I.
,
Kucsera, J.
,
Tomaska, L.
,
Lang, B. F.
,
Nosek, J.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 15.00 MB
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31
Nucleic Acids Research: VOLUME 39 ISSUE 10 2011
Journal:
Nucleic Acids Research
Year:
2011
File:
PDF, 396 KB
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2011
32
Induced topological changes in DNA complexes: influence of DNA sequences and small molecule structures
Hunt, R. A.
,
Munde, M.
,
Kumar, A.
,
Ismail, M. A.
,
Farahat, A. A.
,
Arafa, R. K.
,
Say, M.
,
Batista-Parra, A.
,
Tevis, D.
,
Boykin, D. W.
,
Wilson, W. D.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 8.05 MB
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english, 2011
33
Use of RecA fusion proteins to induce genomic modifications in zebrafish
Liao, H.-K.
,
Essner, J. J.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 7.03 MB
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english, 2011
34
Escherichia coli YafP protein modulates DNA damaging property of the nitroaromatic compounds
Gutierrez, A.
,
Elez, M.
,
Clermont, O.
,
Denamur, E.
,
Matic, I.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 2.98 MB
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english, 2011
35
Cyclodipeptide synthases, a family of class-I aminoacyl-tRNA synthetase-like enzymes involved in non-ribosomal peptide synthesis
Sauguet, L.
,
Moutiez, M.
,
Li, Y.
,
Belin, P.
,
Seguin, J.
,
Le Du, M.-H.
,
Thai, R.
,
Masson, C.
,
Fonvielle, M.
,
Pernodet, J.-L.
,
Charbonnier, J.-B.
,
Gondry, M.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 8.73 MB
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english, 2011
36
Effects of HMGN variants on the cellular transcription profile
Rochman, M.
,
Taher, L.
,
Kurahashi, T.
,
Cherukuri, S.
,
Uversky, V. N.
,
Landsman, D.
,
Ovcharenko, I.
,
Bustin, M.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 7.26 MB
Your tags:
english, 2011
37
AG-dependent 3'-splice sites are predisposed to aberrant splicing due to a mutation at the first nucleotide of an exon
Fu, Y.
,
Masuda, A.
,
Ito, M.
,
Shinmi, J.
,
Ohno, K.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 2.16 MB
Your tags:
english, 2011
38
Yeast H2A.Z, FACT complex and RSC regulate transcription of tRNA gene through differential dynamics of flanking nucleosomes
Mahapatra, S.
,
Dewari, P. S.
,
Bhardwaj, A.
,
Bhargava, P.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 5.60 MB
Your tags:
english, 2011
39
Combinatorial chromatin modification patterns in the human genome revealed by subspace clustering
Ucar, D.
,
Hu, Q.
,
Tan, K.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 1.01 MB
Your tags:
english, 2011
40
A novel mechanism for target gene-specific SWI/SNF recruitment via the Snf2p N-terminus
Weider, M.
,
Schroder, A.
,
Klebl, F.
,
Sauer, N.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 3.99 MB
Your tags:
english, 2011
41
NMR structure of the A730 loop of the Neurospora VS ribozyme: insights into the formation of the active site
Desjardins, G.
,
Bonneau, E.
,
Girard, N.
,
Boisbouvier, J.
,
Legault, P.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 4.67 MB
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english, 2011
42
Characterization of photophysical and base-mimicking properties of a novel fluorescent adenine analogue in DNA
Dierckx, A.
,
Diner, P.
,
El-Sagheer, A. H.
,
Kumar, J. D.
,
Brown, T.
,
Grotli, M.
,
Wilhelmsson, L. M.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 1.58 MB
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english, 2011
43
Comprehensive computational design of mCreI homing endonuclease cleavage specificity for genome engineering
Ulge, U. Y.
,
Baker, D. A.
,
Monnat, R. J.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 4.53 MB
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english, 2011
44
Adenovirus vector-mediated assay system for hepatitis C virus replication
Yoshida, T.
,
Kondoh, M.
,
Ojima, M.
,
Mizuguchi, H.
,
Yamagishi, Y.
,
Sakamoto, N.
,
Yagi, K.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 2.03 MB
Your tags:
english, 2011
45
Differential RNA-binding activity of the hnRNP G protein correlated with the sex genotype in the amphibian oocyte
Kanhoush, R.
,
Praseuth, D.
,
Perrin, C.
,
Chardard, D.
,
Vinh, J.
,
Penrad-Mobayed, M.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 9.94 MB
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english, 2011
46
Multiplex cDNA quantification method that facilitates the standardization of gene expression data
Gotoh, O.
,
Murakami, Y.
,
Suyama, A.
Journal:
Nucleic Acids Research
Year:
2011
Language:
english
File:
PDF, 694 KB
Your tags:
english, 2011
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