Volume 39; Issue 3

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Nucleic Acids Research
Volume 39; Issue 3

Nucleic Acids Research

Volume 39; Issue 3

1

The core-independent promoter-specific interaction of primary sigma factor

Yeh, H.-Y., Chen, T.-C., Liou, K.-M., Hsu, H.-T., Chung, K.-M., Hsu, L.-L., Chang, B.-Y.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 14.44 MB

english, 2011

2

MiRNA-miRNA synergistic network: construction via co-regulating functional modules and disease miRNA topological features

Xu, J., Li, C.-X., Li, Y.-S., Lv, J.-Y., Ma, Y., Shao, T.-T., Xu, L.-D., Wang, Y.-Y., Du, L., Zhang, Y.-P., Jiang, W., Li, C.-Q., Xiao, Y., Li, X.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 8.31 MB

english, 2011

3

Regulation of somatic cell reprogramming through inducible mir-302 expression

Lin, S.-L., Chang, D. C., Lin, C.-H., Ying, S.-Y., Leu, D., Wu, D. T. S.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 3.52 MB

english, 2011

4

The activity of the HIV-1 IRES is stimulated by oxidative stress and controlled by a negative regulatory element

Gendron, K., Ferbeyre, G., Heveker, N., Brakier-Gingras, L.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 4.33 MB

english, 2011

5

Theoretical and empirical quality assessment of transcription factor-binding motifs

Medina-Rivera, A., Abreu-Goodger, C., Thomas-Chollier, M., Salgado, H., Collado-Vides, J., van Helden, J.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.91 MB

english, 2011

6

Subscriptions

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 51 KB

english, 2011

7

Optimizing anti-gene oligonucleotide 'Zorro-LNA' for improved strand invasion into duplex DNA

Zaghloul, E. M., Madsen, A. S., Moreno, P. M. D., Oprea, I. I., El-Andaloussi, S., Bestas, B., Gupta, P., Pedersen, E. B., Lundin, K. E., Wengel, J., Smith, C. I. E.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 828 KB

english, 2011

8

C-terminal domain of archaeal O-phosphoseryl-tRNA kinase displays large-scale motion to bind the 7-bp D-stem of archaeal tRNASec

Sherrer, R. L., Araiso, Y., Aldag, C., Ishitani, R., Ho, J. M. L., Soll, D., Nureki, O.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 5.87 MB

english, 2011

9

Design, construction and characterization of a set of insulated bacterial promoters

Davis, J. H., Rubin, A. J., Sauer, R. T.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 534 KB

english, 2011

10

B-cell display-based one-step method to generate chimeric human IgG monoclonal antibodies

Lin, W., Kurosawa, K., Murayama, A., Kagaya, E., Ohta, K.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.13 MB

english, 2011

11

Functional regulation of FEN1 nuclease and its link to cancer

Zheng, L., Jia, J., Finger, L. D., Guo, Z., Zer, C., Shen, B.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 4.20 MB

english, 2011

12

Predicting translational diffusion of evolutionary conserved RNA structures by the nucleotide number

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 648 KB

english, 2011

13

Characterization of L1 retrotransposition with high-throughput dual-luciferase assays

Xie, Y., Rosser, J. M., Thompson, T. L., Boeke, J. D., An, W.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 671 KB

english, 2011

14

The ARiBo tag: a reliable tool for affinity purification of RNAs under native conditions

Di Tomasso, G., Lampron, P., Dagenais, P., Omichinski, J. G., Legault, P.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.12 MB

english, 2011

15

Amplification of a plasmid bearing a mammalian replication initiation region in chromosomal and extrachromosomal contexts

Harada, S., Sekiguchi, N., Shimizu, N.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 9.47 MB

english, 2011

16

A nucleoside kinase as a dual selector for genetic switches and circuits

Tashiro, Y., Fukutomi, H., Terakubo, K., Saito, K., Umeno, D.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 3.23 MB

english, 2011

17

The translational response of the human mdm2 gene in HEK293T cells exposed to rapamycin: a role for the 5'-UTRs

Genolet, R., Rahim, G., Gubler-Jaquier, P., Curran, J.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.06 MB

english, 2011

18

Formation of a G-quadruplex at the BCL2 major breakpoint region of the t(14;18) translocation in follicular lymphoma

Nambiar, M., Goldsmith, G., Moorthy, B. T., Lieber, M. R., Joshi, M. V., Choudhary, B., Hosur, R. V., Raghavan, S. C.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 5.42 MB

english, 2011

19

Photosensitized [2 + 2] cycloaddition of N-acetylated cytosine affords stereoselective formation of cyclobutane pyrimidine dimer

Yamamoto, J., Nishiguchi, K., Manabe, K., Masutani, C., Hanaoka, F., Iwai, S.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.50 MB

english, 2011

20

Efficient and specific knockdown of small non-coding RNAs in mammalian cells and in mice

Liang, X.-h., Vickers, T. A., Guo, S., Crooke, S. T.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 10.61 MB

english, 2011

21

Structural characterization of naturally occurring RNA single mismatches

Davis, A. R., Kirkpatrick, C. C., Znosko, B. M.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.18 MB

english, 2011

22

Evidences for increased expression variation of duplicate genes in budding yeast: from cis- to trans-regulation effects

Dong, D., Yuan, Z., Zhang, Z.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.44 MB

english, 2011

23

Reverse transcriptases can clamp together nucleic acids strands with two complementary bases at their 3'-termini for initiating DNA synthesis

Oz-Gleenberg, I., Herschhorn, A., Hizi, A.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 4.02 MB

english, 2011

24

End-processing during non-homologous end-joining: a role for exonuclease 1

Bahmed, K., Seth, A., Nitiss, K. C., Nitiss, J. L.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.16 MB

english, 2011

25

Efficient preparation of internally modified single-molecule constructs using nicking enzymes

Luzzietti, N., Brutzer, H., Klaue, D., Schwarz, F. W., Staroske, W., Clausing, S., Seidel, R.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 4.34 MB

english, 2011

26

Cellular and viral chromatin proteins are positive factors in the regulation of adenovirus gene expression

Komatsu, T., Haruki, H., Nagata, K.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 3.35 MB

english, 2011

27

Improved thrombin binding aptamer by incorporation of a single unlocked nucleic acid monomer

Pasternak, A., Hernandez, F. J., Rasmussen, L. M., Vester, B., Wengel, J.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 985 KB

english, 2011

28

Different modes of interaction by TIAR and HuR with target RNA and DNA

Kim, H. S., Wilce, M. C. J., Yoga, Y. M. K., Pendini, N. R., Gunzburg, M. J., Cowieson, N. P., Wilson, G. M., Williams, B. R. G., Gorospe, M., Wilce, J. A.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 3.74 MB

english, 2011

29

Single-strand nicks induce homologous recombination with less toxicity than double-strand breaks using an AAV vector template

Metzger, M. J., McConnell-Smith, A., Stoddard, B. L., Miller, A. D.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 708 KB

english, 2011

30

Dual-specificity phosphatase 23 mediates GCM1 dephosphorylation and activation

Lin, F.-Y., Chang, C.-W., Cheong, M.-L., Chen, H.-C., Lee, D.-Y., Chang, G.-D., Chen, H.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 10.28 MB

english, 2011

31

Conserved small RNAs govern replication and incompatibility of a diverse new plasmid family from marine bacteria

Le Roux, F., Davis, B. M., Waldor, M. K.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.33 MB

english, 2011

32

Systematically fragmented genes in a multipartite mitochondrial genome

Vlcek, C., Marande, W., Teijeiro, S., Lukes, J., Burger, G.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 620 KB

english, 2011

33

Splicing of the Sinorhizobium meliloti RmInt1 group II intron provides evidence of retroelement behavior

Chillon, I., Martinez-Abarca, F., Toro, N.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.25 MB

english, 2011

34

Investigating the predictability of essential genes across distantly related organisms using an integrative approach

Deng, J., Deng, L., Su, S., Zhang, M., Lin, X., Wei, L., Minai, A. A., Hassett, D. J., Lu, L. J.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.41 MB

english, 2011

35

The geometry of DNA supercoils modulates the DNA cleavage activity of human topoisomerase I

Gentry, A. C., Juul, S., Veigaard, C., Knudsen, B. R., Osheroff, N.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.87 MB

english, 2011

36

Centromere-associated topoisomerase activity in bloodstream form Trypanosoma brucei

Obado, S. O., Bot, C., Echeverry, M. C., Bayona, J. C., Alvarez, V. E., Taylor, M. C., Kelly, J. M.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.03 MB

english, 2011

37

Localization of an accessory helicase at the replisome is critical in sustaining efficient genome duplication

Atkinson, J., Gupta, M. K., Rudolph, C. J., Bell, H., Lloyd, R. G., McGlynn, P.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.30 MB

english, 2011

38

Nucleic Acids Research

Journal:

Nucleic Acids Research

Year:

2011

File:

PDF, 58 KB

2011

39

Nucleic Acids Research

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 58 KB

english, 2011

40

Nucleic Acids Research: VOLUME 39 ISSUE 3 2011

Journal:

Nucleic Acids Research

Year:

2011

File:

PDF, 34.80 MB

2011

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