Volume 39; Issue 6

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Nucleic Acids Research
Volume 39; Issue 6

Nucleic Acids Research

Volume 39; Issue 6

1

Conjugation polymer nanobelts: a novel fluorescent sensing platform for nucleic acid detection

Wang, L., Zhang, Y., Tian, J., Li, H., Sun, X.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 3.23 MB

english, 2011

2

Expression of distinct RNAs from 3' untranslated regions

Mercer, T. R., Wilhelm, D., Dinger, M. E., Solda, G., Korbie, D. J., Glazov, E. A., Truong, V., Schwenke, M., Simons, C., Matthaei, K. I., Saint, R., Koopman, P., Mattick, J. S.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 7.50 MB

english, 2011

3

A piggyBac transposon-based mutagenesis system for the fission yeast Schizosaccharomyces pombe

Li, J., Zhang, J.-M., Li, X., Suo, F., Zhang, M.-J., Hou, W., Han, J., Du, L.-L.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.27 MB

english, 2011

4

Protein inactivation in mycobacteria by controlled proteolysis and its application to deplete the beta subunit of RNA polymerase

Kim, J.-H., Wei, J.-R., Wallach, J. B., Robbins, R. S., Rubin, E. J., Schnappinger, D.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 6.20 MB

english, 2011

5

A conserved structure within the HIV gag open reading frame that controls translation initiation directly recruits the 40S subunit and eIF3

Locker, N., Chamond, N., Sargueil, B.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.19 MB

english, 2011

6

Critical association of ncRNA with introns

Rearick, D., Prakash, A., McSweeny, A., Shepard, S. S., Fedorova, L., Fedorov, A.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.53 MB

english, 2011

7

A multivalent DNA aptamer specific for the B-cell receptor on human lymphoma and leukemia

Mallikaratchy, P. R., Ruggiero, A., Gardner, J. R., Kuryavyi, V., Maguire, W. F., Heaney, M. L., McDevitt, M. R., Patel, D. J., Scheinberg, D. A.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.11 MB

english, 2011

8

Mismatch-repair protein MSH6 is associated with Ku70 and regulates DNA double-strand break repair

Shahi, A., Lee, J.-H., Kang, Y., Lee, S. H., Hyun, J.-W., Chang, I.-Y., Jun, J.-Y., You, H. J.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 9.77 MB

english, 2011

9

Importance of the proline-rich multimerization domain on the oligomerization and nucleic acid binding properties of HIV-1 Vif

Bernacchi, S., Mercenne, G., Tournaire, C., Marquet, R., Paillart, J.-C.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.52 MB

english, 2011

10

Chromatin and DNA methylation dynamics during retinoic acid-induced RET gene transcriptional activation in neuroblastoma cells

Angrisano, T., Sacchetti, S., Natale, F., Cerrato, A., Pero, R., Keller, S., Peluso, S., Perillo, B., Avvedimento, V. E., Fusco, A., Bruni, C. B., Lembo, F., Santoro, M., Chiariotti, L.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 5.04 MB

english, 2011

11

Subscriptions

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 49 KB

english, 2011

12

Characterization of the relationship between integrase, excisionase and antirepressor activities associated with a superinfecting Shiga toxin encoding bacteriophage

Fogg, P. C. M., Rigden, D. J., Saunders, J. R., McCarthy, A. J., Allison, H. E.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.95 MB

english, 2011

13

Improved nucleotide selectivity and termination of 3'-OH unblocked reversible terminators by molecular tuning of 2-nitrobenzyl alkylated HOMedU triphosphates

Litosh, V. A., Wu, W., Stupi, B. P., Wang, J., Morris, S. E., Hersh, M. N., Metzker, M. L.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.59 MB

english, 2011

14

Concentration-dependent exchange accelerates turnover of proteins bound to double-stranded DNA

Graham, J. S., Johnson, R. C., Marko, J. F.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.84 MB

english, 2011

15

Epigenetic control of a VDR-governed feed-forward loop that regulates p21(waf1/cip1) expression and function in non-malignant prostate cells

Thorne, J. L., Maguire, O., Doig, C. L., Battaglia, S., Fehr, L., Sucheston, L. E., Heinaniemi, M., O'Neill, L. P., McCabe, C. J., Turner, B. M., Carlberg, C., Campbell, M. J.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 6.13 MB

english, 2011

16

High-throughput mapping of protein occupancy identifies functional elements without the restriction of a candidate factor approach

Ferraris, L., Stewart, A. P., Gemberling, M. P., Reid, D. C., Lapadula, M. J., Thompson, W. A., Fairbrother, W. G.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.94 MB

english, 2011

17

seqMINER: an integrated ChIP-seq data interpretation platform

Ye, T., Krebs, A. R., Choukrallah, M.-A., Keime, C., Plewniak, F., Davidson, I., Tora, L.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.06 MB

english, 2011

18

Protein multiple sequence alignment by hybrid bio-inspired algorithms

Cutello, V., Nicosia, G., Pavone, M., Prizzi, I.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 19.51 MB

english, 2011

19

Nucleic Acids Research: VOLUME 39 ISSUE 6 2011

Journal:

Nucleic Acids Research

Year:

2011

File:

PDF, 653 KB

2011

20

eIF4G stimulates the activity of the DEAD box protein eIF4A by a conformational guidance mechanism

Hilbert, M., Kebbel, F., Gubaev, A., Klostermeier, D.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 3.75 MB

english, 2011

21

The mRNA cap-binding complex stimulates the formation of pre-initiation complex at the promoter via its interaction with Mot1p in vivo

Lahudkar, S., Shukla, A., Bajwa, P., Durairaj, G., Stanojevic, N., Bhaumik, S. R.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 8.40 MB

english, 2011

22

Linear Streptomyces plasmids form superhelical circles through interactions between their terminal proteins

Tsai, H.-H., Huang, C.-H., Tessmer, I., Erie, D. A., Chen, C. W.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.51 MB

english, 2011

23

PAK1IP1, a ribosomal stress-induced nucleolar protein, regulates cell proliferation via the p53-MDM2 loop

Yu, W., Qiu, Z., Gao, N., Wang, L., Cui, H., Qian, Y., Jiang, L., Luo, J., Yi, Z., Lu, H., Li, D., Liu, M.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 6.91 MB

english, 2011

24

Pseudouridine at position 55 in tRNA controls the contents of other modified nucleotides for low-temperature adaptation in the extreme-thermophilic eubacterium Thermus thermophilus

Ishida, K., Kunibayashi, T., Tomikawa, C., Ochi, A., Kanai, T., Hirata, A., Iwashita, C., Hori, H.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.47 MB

english, 2011

25

A distinct first replication cycle of DNA introduced in mammalian cells

Chandok, G. S., Kapoor, K. K., Brick, R. M., Sidorova, J. M., Krasilnikova, M. M.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 5.80 MB

english, 2011

26

Trans-cleaving hammerhead ribozymes with tertiary stabilizing motifs: in vitro and in vivo activity against a structured viroid RNA

Carbonell, A., Flores, R., Gago, S.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 5.86 MB

english, 2011

27

Extensive role of the general regulatory factors, Abf1 and Rap1, in determining genome-wide chromatin structure in budding yeast

Ganapathi, M., Palumbo, M. J., Ansari, S. A., He, Q., Tsui, K., Nislow, C., Morse, R. H.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 12.08 MB

english, 2011

28

The highly conserved eukaryotic DRG factors are required for efficient translation in a manner redundant with the putative RNA helicase Slh1

Daugeron, M.-C., Prouteau, M., Lacroute, F., Seraphin, B.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 5.69 MB

english, 2011

29

Change of tRNA identity leads to a divergent orthogonal histidyl-tRNA synthetase/tRNAHis pair

Yuan, J., Gogakos, T., Babina, A. M., Soll, D., Randau, L.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.53 MB

english, 2011

30

Structural insight into the functional mechanism of Nep1/Emg1 N1-specific pseudouridine methyltransferase in ribosome biogenesis

Thomas, S. R., Keller, C. A., Szyk, A., Cannon, J. R., LaRonde-LeBlanc, N. A.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 18.47 MB

english, 2011

31

T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data

Fiston-Lavier, A.-S., Carrigan, M., Petrov, D. A., Gonzalez, J.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 995 KB

english, 2011

32

GiRaF: robust, computational identification of influenza reassortments via graph mining

Nagarajan, N., Kingsford, C.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 7.20 MB

english, 2011

33

Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli

Kahramanoglou, C., Seshasayee, A. S. N., Prieto, A. I., Ibberson, D., Schmidt, S., Zimmermann, J., Benes, V., Fraser, G. M., Luscombe, N. M.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.41 MB

english, 2011

34

TRAP binding to the Bacillus subtilis trp leader region RNA causes efficient transcription termination at a weak intrinsic terminator

Potter, K. D., Merlino, N. M., Jacobs, T., Gollnick, P.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 4.53 MB

english, 2011

35

Single-Molecule characterization of oligomerization kinetics and equilibria of the tumor suppressor p53

Rajagopalan, S., Huang, F., Fersht, A. R.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.73 MB

english, 2011

36

Nucleic Acids Research

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 58 KB

english, 2011

37

An SF1 affinity model to identify branch point sequences in human introns

Pastuszak, A. W., Joachimiak, M. P., Blanchette, M., Rio, D. C., Brenner, S. E., Frankel, A. D.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 568 KB

english, 2011

38

Phosphorylation of human Argonaute proteins affects small RNA binding

Rudel, S., Wang, Y., Lenobel, R., Korner, R., Hsiao, H.-H., Urlaub, H., Patel, D., Meister, G.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 14.67 MB

english, 2011

39

Cooperation of RAD51 and RAD54 in regression of a model replication fork

Bugreev, D. V., Rossi, M. J., Mazin, A. V.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 593 KB

english, 2011

40

Tertiary contacts control switching of the SAM-I riboswitch

Hennelly, S. P., Sanbonmatsu, K. Y.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 13.15 MB

english, 2011

41

Arabidopsis thaliana telomeres exhibit euchromatic features

Vaquero-Sedas, M. I., Gamez-Arjona, F. M., Vega-Palas, M. A.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 3.16 MB

english, 2011

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