Volume 39; Issue 8

Main
Nucleic Acids Research
Volume 39; Issue 8

Nucleic Acids Research

Volume 39; Issue 8

1

Selective interactions of boundaries with upstream region of Abd-B promoter in Drosophila bithorax complex and role of dCTCF in this process

Kyrchanova, O., Ivlieva, T., Toshchakov, S., Parshikov, A., Maksimenko, O., Georgiev, P.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 3.24 MB

english, 2011

2

c-MYC coordinately regulates ribosomal gene chromatin remodeling and Pol I availability during granulocyte differentiation

Poortinga, G., Wall, M., Sanij, E., Siwicki, K., Ellul, J., Brown, D., Holloway, T. P., Hannan, R. D., McArthur, G. A.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.06 MB

english, 2011

3

VCre/VloxP and SCre/SloxP: new site-specific recombination systems for genome engineering

Suzuki, E., Nakayama, M.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 3.83 MB

english, 2011

4

Insights into plant biomass conversion from the genome of the anaerobic thermophilic bacterium Caldicellulosiruptor bescii DSM 6725

Dam, P., Kataeva, I., Yang, S.-J., Zhou, F., Yin, Y., Chou, W., Poole, F. L., Westpheling, J., Hettich, R., Giannone, R., Lewis, D. L., Kelly, R., Gilbert, H. J., Henrissat, B., Xu, Y., Adams, M. W. W

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 3.50 MB

english, 2011

5

Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group

Nunoura, T., Takaki, Y., Kakuta, J., Nishi, S., Sugahara, J., Kazama, H., Chee, G.-J., Hattori, M., Kanai, A., Atomi, H., Takai, K., Takami, H.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 4.56 MB

english, 2011

6

Fox-3 and PSF interact to activate neural cell-specific alternative splicing

Kim, K. K., Kim, Y. C., Adelstein, R. S., Kawamoto, S.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.63 MB

english, 2011

7

Folding of the lysine riboswitch: importance of peripheral elements for transcriptional regulation

Blouin, S., Chinnappan, R., Lafontaine, D. A.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 7.57 MB

english, 2011

8

The suboptimal structures find the optimal RNAs: homology search for bacterial non-coding RNAs using suboptimal RNA structures

Panek, J., Krasny, L., Bobek, J., Jezkova, E., Korelusova, J., Vohradsky, J.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 919 KB

english, 2011

9

Towards a genome-wide transcriptogram: the Saccharomyces cerevisiae case

Rybarczyk-Filho, J. L., Castro, M. A. A., Dalmolin, R. J. S., Moreira, J. C. F., Brunnet, L. G., de Almeida, R. M. C.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 18.84 MB

english, 2011

10

The translational repressor 4E-BP called to order by eIF4E: new structural insights by SAXS

Gosselin, P., Oulhen, N., Jam, M., Ronzca, J., Cormier, P., Czjzek, M., Cosson, B.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 3.64 MB

english, 2011

11

Structures and activities of archaeal members of the LigD 3'-phosphoesterase DNA repair enzyme superfamily

Smith, P., Nair, P. A., Das, U., Zhu, H., Shuman, S.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 10.22 MB

english, 2011

12

A novel method for the efficient and selective identification of 5-hydroxymethylcytosine in genomic DNA

Robertson, A. B., Dahl, J. A., Vagbo, C. B., Tripathi, P., Krokan, H. E., Klungland, A.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 5.07 MB

english, 2011

13

Molecular breeding of polymerases for resistance to environmental inhibitors

Baar, C., d'Abbadie, M., Vaisman, A., Arana, M. E., Hofreiter, M., Woodgate, R., Kunkel, T. A., Holliger, P.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.33 MB

english, 2011

14

Artificial trans-encoded small non-coding RNAs specifically silence the selected gene expression in bacteria

Man, S., Cheng, R., Miao, C., Gong, Q., Gu, Y., Lu, X., Han, F., Yu, W.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 4.96 MB

english, 2011

15

Pre-replication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zone

Lubelsky, Y., Sasaki, T., Kuipers, M. A., Lucas, I., Le Beau, M. M., Carignon, S., Debatisse, M., Prinz, J. A., Dennis, J. H., Gilbert, D. M.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 13.59 MB

english, 2011

16

Rescue of non-sense mutated p53 tumor suppressor gene by aminoglycosides

Floquet, C., Deforges, J., Rousset, J.-P., Bidou, L.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.77 MB

english, 2011

17

Nucleosome accessibility governed by the dimer/tetramer interface

Bohm, V., Hieb, A. R., Andrews, A. J., Gansen, A., Rocker, A., Toth, K., Luger, K., Langowski, J.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 5.76 MB

english, 2011

18

Nucleic Acids Research: VOLUME 39 ISSUE 8 2011

Journal:

Nucleic Acids Research

Year:

2011

File:

PDF, 558 KB

2011

19

Nucleic Acids Research

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 58 KB

english, 2011

20

A novel regulatory circuit in base excision repair involving AP endonuclease 1, Creb1 and DNA polymerase

Pei, D.-S., Yang, X.-J., Liu, W., Guikema, J. E. J., Schrader, C. E., Strauss, P. R.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 4.43 MB

english, 2011

21

Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays

Stead, M. B., Marshburn, S., Mohanty, B. K., Mitra, J., Castillo, L. P., Ray, D., van Bakel, H., Hughes, T. R., Kushner, S. R.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 7.52 MB

english, 2011

22

The relationship between HIV-1 genome RNA dimerization, virion maturation and infectivity

Ohishi, M., Nakano, T., Sakuragi, S., Shioda, T., Sano, K., Sakuragi, J.-i.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 7.60 MB

english, 2011

23

Mutations in the intersubunit bridge regions of 16S rRNA affect decoding and subunit-subunit interactions on the 70S ribosome

Sun, Q., Vila-Sanjurjo, A., O'Connor, M.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 3.70 MB

english, 2011

24

Determinants of Nam8-dependent splicing of meiotic pre-mRNAs

Qiu, Z. R., Schwer, B., Shuman, S.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 12.51 MB

english, 2011

25

Transition dynamics and selection of the distinct S-DNA and strand unpeeling modes of double helix overstretching

Fu, H., Chen, H., Zhang, X., Qu, Y., Marko, J. F., Yan, J.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 5.59 MB

english, 2011

26

Amplification ratio control system for copy number variation genotyping

Guthrie, P. A. I., Gaunt, T. R., Abdollahi, M. R., Rodriguez, S., Lawlor, D. A., Smith, G. D., Day, I. N. M.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.20 MB

english, 2011

27

Conservation defines functional motifs in the squint/nodal-related 1 RNA dorsal localization element

Gilligan, P. C., Kumari, P., Lim, S., Cheong, A., Chang, A., Sampath, K.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 6.80 MB

english, 2011

28

RhoA activation participates in rearrangement of processing bodies and release of nucleated AU-rich mRNAs

Takahashi, S., Sakurai, K., Ebihara, A., Kajiho, H., Saito, K., Kontani, K., Nishina, H., Katada, T.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 9.96 MB

english, 2011

29

Different sequence signatures in the upstream regions of plant and animal tRNA genes shape distinct modes of regulation

Zhang, G., Lukoszek, R., Mueller-Roeber, B., Ignatova, Z.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 3.02 MB

english, 2011

30

Thermophoretic melting curves quantify the conformation and stability of RNA and DNA

Wienken, C. J., Baaske, P., Duhr, S., Braun, D.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.60 MB

english, 2011

31

Subscriptions

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 49 KB

english, 2011

32

Poly (ADP-ribose) polymerase (PARP) is not involved in base excision repair but PARP inhibition traps a single-strand intermediate

Strom, C. E., Johansson, F., Uhlen, M., Szigyarto, C. A.-K., Erixon, K., Helleday, T.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 3.42 MB

english, 2011

33

Two groups of phenylalanine biosynthetic operon leader peptides genes: a high level of apparently incidental frameshifting in decoding Escherichia coli pheL

Gurvich, O. L., Nasvall, S. J., Baranov, P. V., Bjork, G. R., Atkins, J. F.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 9.33 MB

english, 2011

34

Interaction of STAT6 with its co-activator SRC-1/NCoA-1 is regulated by dephosphorylation of the latter via PP2A

Munz, T., Litterst, C. M., Pfitzner, E.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 5.20 MB

english, 2011

35

An upstream ORF with non-AUG start codon is translated in vivo but dispensable for translational control of GCN4 mRNA

Zhang, F., Hinnebusch, A. G.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.62 MB

english, 2011

36

Arxes: retrotransposed genes required for adipogenesis

Prokesch, A., Bogner-Strauss, J. G., Hackl, H., Rieder, D., Neuhold, C., Walenta, E., Krogsdam, A., Scheideler, M., Papak, C., Wong, W.-C., Vinson, C., Eisenhaber, F., Trajanoski, Z.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 7.49 MB

english, 2011

37

Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets

Zhao, H., Yang, Y., Zhou, Y.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.14 MB

english, 2011

38

Structural and functional characterization of the Mycobacterium tuberculosis uridine monophosphate kinase: insights into the allosteric regulation

Labesse, G., Benkali, K., Salard-Arnaud, I., Gilles, A.-M., Munier-Lehmann, H.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 7.06 MB

english, 2011

39

Efficient detection of RNA-protein interactions using tethered RNAs

Iioka, H., Loiselle, D., Haystead, T. A., Macara, I. G.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.00 MB

english, 2011

40

The chromodomains of CHD1 are critical for enzymatic activity but less important for chromatin localization

Morettini, S., Tribus, M., Zeilner, A., Sebald, J., Campo-Fernandez, B., Scheran, G., Worle, H., Podhraski, V., Fyodorov, D. V., Lusser, A.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 9.38 MB

english, 2011

41

Expression of CD44 3'-untranslated region regulates endogenous microRNA functions in tumorigenesis and angiogenesis

Jeyapalan, Z., Deng, Z., Shatseva, T., Fang, L., He, C., Yang, B. B.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 26.24 MB

english, 2011