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Volume 40; Issue 12
Main
Nucleic Acids Research
Volume 40; Issue 12
Nucleic Acids Research
Volume 40; Issue 12
1
Unveiling combinatorial regulation through the combination of ChIP information and in silico cis-regulatory module detection
Sun, H.
,
Guns, T.
,
Fierro, A. C.
,
Thorrez, L.
,
Nijssen, S.
,
Marchal, K.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 2.11 MB
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english, 2012
2
A robust PCR primer design platform applied to the detection of Acidobacteria Group 1 in soil
Gans, J. D.
,
Dunbar, J.
,
Eichorst, S. A.
,
Gallegos-Graves, L. V.
,
Wolinsky, M.
,
Kuske, C. R.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 728 KB
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3
MicroRNA and transcription factor co-regulatory network analysis reveals miR-19 inhibits CYLD in T-cell acute lymphoblastic leukemia
Ye, H.
,
Liu, X.
,
Lv, M.
,
Wu, Y.
,
Kuang, S.
,
Gong, J.
,
Yuan, P.
,
Zhong, Z.
,
Li, Q.
,
Jia, H.
,
Sun, J.
,
Chen, Z.
,
Guo, A.-Y.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 7.72 MB
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4
Targeted transcriptional activation of silent oct4 pluripotency gene by combining designer TALEs and inhibition of epigenetic modifiers
Bultmann, S.
,
Morbitzer, R.
,
Schmidt, C. S.
,
Thanisch, K.
,
Spada, F.
,
Elsaesser, J.
,
Lahaye, T.
,
Leonhardt, H.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 1.40 MB
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5
Drosophila melanogaster linker histone dH1 is required for transposon silencing and to preserve genome integrity
Vujatovic, O.
,
Zaragoza, K.
,
Vaquero, A.
,
Reina, O.
,
Bernues, J.
,
Azorin, F.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 24.36 MB
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6
Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
Yosef, I.
,
Goren, M. G.
,
Qimron, U.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 4.17 MB
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english, 2012
7
Interaction of human telomeric DNA with N-methyl mesoporphyrin IX
Nicoludis, J. M.
,
Barrett, S. P.
,
Mergny, J.-L.
,
Yatsunyk, L. A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 8.32 MB
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english, 2012
8
Bacillus subtilis genome editing using ssDNA with short homology regions
Wang, Y.
,
Weng, J.
,
Waseem, R.
,
Yin, X.
,
Zhang, R.
,
Shen, Q.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 957 KB
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9
The Drosophila 7SK snRNP and the essential role of dHEXIM in development
Nguyen, D.
,
Krueger, B. J.
,
Sedore, S. C.
,
Brogie, J. E.
,
Rogers, J. T.
,
Rajendra, T. K.
,
Saunders, A.
,
Matera, A. G.
,
Lis, J. T.
,
Uguen, P.
,
Price, D. H.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 14.45 MB
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10
Real-time assay for testing components of protein synthesis
Rosenblum, G.
,
Chen, C.
,
Kaur, J.
,
Cui, X.
,
Goldman, Y. E.
,
Cooperman, B. S.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 4.35 MB
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11
How much can we learn about the function of bacterial rRNA modification by mining large-scale experimental datasets?
Sergiev, P. V.
,
Golovina, A. Y.
,
Sergeeva, O. V.
,
Osterman, I. A.
,
Nesterchuk, M. V.
,
Bogdanov, A. A.
,
Dontsova, O. A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 9.56 MB
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12
Engineering naturally occurring trans-acting non-coding RNAs to sense molecular signals
Qi, L.
,
Lucks, J. B.
,
Liu, C. C.
,
Mutalik, V. K.
,
Arkin, A. P.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 935 KB
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13
Raman spectroscopic detection of the T-HgII-T base pair and the ionic characteristics of mercury
Uchiyama, T.
,
Miura, T.
,
Takeuchi, H.
,
Dairaku, T.
,
Komuro, T.
,
Kawamura, T.
,
Kondo, Y.
,
Benda, L.
,
Sychrovsky, V.
,
Bour, P.
,
Okamoto, I.
,
Ono, A.
,
Tanaka, Y.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 6.58 MB
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14
The role of N-terminus of Plasmodium falciparum ORC1 in telomeric localization and var gene silencing
Deshmukh, A. S.
,
Srivastava, S.
,
Herrmann, S.
,
Gupta, A.
,
Mitra, P.
,
Gilberger, T. W.
,
Dhar, S. K.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 7.89 MB
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15
Regulation of AT1R expression through HuR by insulin
Paukku, K.
,
Backlund, M.
,
De Boer, R. A.
,
Kalkkinen, N.
,
Kontula, K. K.
,
Lehtonen, J. Y. A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 2.88 MB
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16
Single-molecule multiparameter fluorescence spectroscopy reveals directional MutS binding to mismatched bases in DNA
Cristovao, M.
,
Sisamakis, E.
,
Hingorani, M. M.
,
Marx, A. D.
,
Jung, C. P.
,
Rothwell, P. J.
,
Seidel, C. A. M.
,
Friedhoff, P.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 2.22 MB
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17
Glycyl-tRNA synthetase specifically binds to the poliovirus IRES to activate translation initiation
Andreev, D. E.
,
Hirnet, J.
,
Terenin, I. M.
,
Dmitriev, S. E.
,
Niepmann, M.
,
Shatsky, I. N.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 10.55 MB
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18
Nucleic Acids Research: VOLUME 40 ISSUE 12 2012
Journal:
Nucleic Acids Research
Year:
2012
File:
PDF, 598 KB
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2012
19
Analysis of lysine recognition and specificity of the Bacillus subtilis L box riboswitch
Wilson-Mitchell, S. N.
,
Grundy, F. J.
,
Henkin, T. M.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.45 MB
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20
Selective disruption of the DNA polymerase III - complex by the umuD gene products
Silva, M. C.
,
Nevin, P.
,
Ronayne, E. A.
,
Beuning, P. J.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 2.90 MB
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21
Replication fork movement and methylation govern SeqA binding to the Escherichia coli chromosome
Waldminghaus, T.
,
Weigel, C.
,
Skarstad, K.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 6.63 MB
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22
CTCF binds to sites in the major histocompatibility complex that are rapidly reconfigured in response to interferon-gamma
Ottaviani, D.
,
Lever, E.
,
Mao, S.
,
Christova, R.
,
Ogunkolade, B. W.
,
Jones, T. A.
,
Szary, J.
,
Aarum, J.
,
Mumin, M. A.
,
Pieri, C. A.
,
Krawetz, S. A.
,
Sheer, D.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 7.79 MB
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23
Crosslinking-MS analysis reveals RNA polymerase I domain architecture and basis of rRNA cleavage
Jennebach, S.
,
Herzog, F.
,
Aebersold, R.
,
Cramer, P.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 16.52 MB
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24
The high-resolution crystal structure of a parallel intermolecular DNA G-4 quadruplex/drug complex employing syn glycosyl linkages
Clark, G. R.
,
Pytel, P. D.
,
Squire, C. J.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 6.27 MB
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25
Aberrant growth and lethality of Arabidopsis deficient in nonsense-mediated RNA decay factors is caused by autoimmune-like response
Riehs-Kearnan, N.
,
Gloggnitzer, J.
,
Dekrout, B.
,
Jonak, C.
,
Riha, K.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 11.20 MB
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26
Architecture of the trypanosome RNA editing accessory complex, MRB1
Ammerman, M. L.
,
Downey, K. M.
,
Hashimi, H.
,
Fisk, J. C.
,
Tomasello, D. L.
,
Faktorova, D.
,
Kafkova, L.
,
King, T.
,
Lukes, J.
,
Read, L. K.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 4.29 MB
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27
CBX4-mediated SUMO modification regulates BMI1 recruitment at sites of DNA damage
Ismail, I. H.
,
Gagne, J.-P.
,
Caron, M.-C.
,
McDonald, D.
,
Xu, Z.
,
Masson, J.-Y.
,
Poirier, G. G.
,
Hendzel, M. J.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 8.53 MB
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28
Global or local? Predicting secondary structure and accessibility in mRNAs
Lange, S. J.
,
Maticzka, D.
,
Mohl, M.
,
Gagnon, J. N.
,
Brown, C. M.
,
Backofen, R.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 5.11 MB
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29
Microhomology-mediated DNA strand annealing and elongation by human DNA polymerases and on normal and repetitive DNA sequences
Crespan, E.
,
Czabany, T.
,
Maga, G.
,
Hubscher, U.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 9.59 MB
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30
Engineered zinc finger nickases induce homology-directed repair with reduced mutagenic effects
Ramirez, C. L.
,
Certo, M. T.
,
Mussolino, C.
,
Goodwin, M. J.
,
Cradick, T. J.
,
McCaffrey, A. P.
,
Cathomen, T.
,
Scharenberg, A. M.
,
Joung, J. K.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 2.31 MB
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31
Transcriptional provirus silencing as a crosstalk of de novo DNA methylation and epigenomic features at the integration site
Senigl, F.
,
Auxt, M.
,
Hejnar, J.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 2.76 MB
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32
Structural and functional characterization of interactions involving the Tfb1 subunit of TFIIH and the NER factor Rad2
Lafrance-Vanasse, J.
,
Arseneault, G.
,
Cappadocia, L.
,
Chen, H.-T.
,
Legault, P.
,
Omichinski, J. G.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 7.56 MB
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33
Neural stem cells exposed to BrdU lose their global DNA methylation and undergo astrocytic differentiation
Schneider, L.
,
d'Adda di Fagagna, F.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 5.74 MB
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34
Bayesian estimation of bacterial community composition from 454 sequencing data
Cheng, L.
,
Walker, A. W.
,
Corander, J.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 5.43 MB
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35
Grinder: a versatile amplicon and shotgun sequence simulator
Angly, F. E.
,
Willner, D.
,
Rohwer, F.
,
Hugenholtz, P.
,
Tyson, G. W.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 4.29 MB
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36
Rapid hierarchical assembly of medium-size DNA cassettes
Schmid-Burgk, J. L.
,
Xie, Z.
,
Frank, S.
,
Virreira Winter, S.
,
Mitschka, S.
,
Kolanus, W.
,
Murray, A.
,
Benenson, Y.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 7.47 MB
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37
CORECLUST: identification of the conserved CRM grammar together with prediction of gene regulation
Nikulova, A. A.
,
Favorov, A. V.
,
Sutormin, R. A.
,
Makeev, V. J.
,
Mironov, A. A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.83 MB
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38
The cellular abundance of the essential transcription termination factor TTF-I regulates ribosome biogenesis and is determined by MDM2 ubiquitinylation
Lessard, F.
,
Stefanovsky, V.
,
Tremblay, M. G.
,
Moss, T.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 4.90 MB
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39
Selectivity of stop codon recognition in translation termination is modulated by multiple conformations of GTS loop in eRF1
Wong, L. E.
,
Li, Y.
,
Pillay, S.
,
Frolova, L.
,
Pervushin, K.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 6.11 MB
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40
Related haloarchaeal pleomorphic viruses contain different genome types
Sencilo, A.
,
Paulin, L.
,
Kellner, S.
,
Helm, M.
,
Roine, E.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 2.48 MB
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41
Budding yeast telomerase RNA transcription termination is dictated by the Nrd1/Nab3 non-coding RNA termination pathway
Noel, J.-F.
,
Larose, S.
,
Abou Elela, S.
,
Wellinger, R. J.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 4.76 MB
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42
Structural, functional and evolutionary relationships between homing endonucleases and proteins from their host organisms
Taylor, G. K.
,
Stoddard, B. L.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 7.15 MB
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43
Co-evolution of segregation guide DNA motifs and the FtsK translocase in bacteria: identification of the atypical Lactococcus lactis KOPS motif
Nolivos, S.
,
Touzain, F.
,
Pages, C.
,
Coddeville, M.
,
Rousseau, P.
,
El Karoui, M.
,
Le Bourgeois, P.
,
Cornet, F.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 5.70 MB
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44
Extracting regulator activity profiles by integration of de novo motifs and expression data: characterizing key regulators of nutrient depletion responses in Streptomyces coelicolor
Iqbal, M.
,
Mast, Y.
,
Amin, R.
,
Hodgson, D. A.
,
Wohlleben, W.
,
Burroughs, N. J.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 12.64 MB
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45
Identification of a binding motif specific to HNF4 by comparative analysis of multiple nuclear receptors
Fang, B.
,
Mane-Padros, D.
,
Bolotin, E.
,
Jiang, T.
,
Sladek, F. M.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 5.28 MB
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46
Inhibition of the function of class IIa HDACs by blocking their interaction with MEF2
Jayathilaka, N.
,
Han, A.
,
Gaffney, K. J.
,
Dey, R.
,
Jarusiewicz, J. A.
,
Noridomi, K.
,
Philips, M. A.
,
Lei, X.
,
He, J.
,
Ye, J.
,
Gao, T.
,
Petasis, N. A.
,
Chen, L.
Journal:
Nucleic Acids Research
Year:
2012
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english
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PDF, 4.41 MB
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47
Subscriptions
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 49 KB
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48
Air2p is critical for the assembly and RNA-binding of the TRAMP complex and the KOW domain of Mtr4p is crucial for exosome activation
Holub, P.
,
Lalakova, J.
,
Cerna, H.
,
Pasulka, J.
,
Sarazova, M.
,
Hrazdilova, K.
,
Arce, M. S.
,
Hobor, F.
,
Stefl, R.
,
Vanacova, S.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 9.15 MB
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49
High-throughput single-molecule analysis of DNA-protein interactions by tethered particle motion
Plenat, T.
,
Tardin, C.
,
Rousseau, P.
,
Salome, L.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 4.98 MB
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50
Genome-wide studies of the multi-zinc finger Drosophila Suppressor of Hairy-wing protein in the ovary
Soshnev, A. A.
,
He, B.
,
Baxley, R. M.
,
Jiang, N.
,
Hart, C. M.
,
Tan, K.
,
Geyer, P. K.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 9.82 MB
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51
Detection and imaging of the free radical DNA in cells--Site-specific radical formation induced by Fenton chemistry and its repair in cellular DNA as seen by electron spin resonance, immuno-spin trapping and confocal microscopy
Bhattacharjee, S.
,
Chatterjee, S.
,
Jiang, J.
,
Sinha, B. K.
,
Mason, R. P.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 1.36 MB
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52
R-CHIE: a web server and R package for visualizing RNA secondary structures
Lai, D.
,
Proctor, J. R.
,
Zhu, J. Y. A.
,
Meyer, I. M.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 229 KB
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53
HIF2 -Sp1 interaction mediates a deacetylation-dependent FVII-gene activation under hypoxic conditions in ovarian cancer cells
Koizume, S.
,
Ito, S.
,
Miyagi, E.
,
Hirahara, F.
,
Nakamura, Y.
,
Sakuma, Y.
,
Osaka, H.
,
Takano, Y.
,
Ruf, W.
,
Miyagi, Y.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 1.21 MB
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54
Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress
Servant, G.
,
Pinson, B.
,
Tchalikian-Cosson, A.
,
Coulpier, F.
,
Lemoine, S.
,
Pennetier, C.
,
Bridier-Nahmias, A.
,
Todeschini, A. L.
,
Fayol, H.
,
Daignan-Fornier, B.
,
Lesage, P.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.17 MB
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55
Genetic recombination in Bacillus subtilis: a division of labor between two single-strand DNA-binding proteins
Yadav, T.
,
Carrasco, B.
,
Myers, A. R.
,
George, N. P.
,
Keck, J. L.
,
Alonso, J. C.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 9.33 MB
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56
Neisseria conserved protein DMP19 is a DNA mimic protein that prevents DNA binding to a hypothetical nitrogen-response transcription factor
Wang, H.-C.
,
Ko, T.-P.
,
Wu, M.-L.
,
Ku, S.-C.
,
Wu, H.-J.
,
Wang, A. H.- J.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 9.57 MB
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57
Intracellular stability of 2'-OMe-4'-thioribonucleoside modified siRNA leads to long-term RNAi effect
Takahashi, M.
,
Nagai, C.
,
Hatakeyama, H.
,
Minakawa, N.
,
Harashima, H.
,
Matsuda, A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 715 KB
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english, 2012
58
The Caenorhabditis elegans GW182 protein AIN-1 interacts with PAB-1 and subunits of the PAN2-PAN3 and CCR4-NOT deadenylase complexes
Kuzuoglu-Ozturk, D.
,
Huntzinger, E.
,
Schmidt, S.
,
Izaurralde, E.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 2.64 MB
Your tags:
english, 2012
59
Methyl methanesulfonate (MMS) produces heat-labile DNA damage but no detectable in vivo DNA double-strand breaks
Lundin, C.
,
North, M.
,
Erixon, K.
,
Walters, K.
,
Jenssen, D.
,
Goldman, A. S. H.
,
Helleday, T.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 575 KB
Your tags:
english, 2012
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