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Volume 40; Issue 18
Main
Nucleic Acids Research
Volume 40; Issue 18
Nucleic Acids Research
Volume 40; Issue 18
1
Structural basis for translation termination by archaeal RF1 and GTP-bound EF1 complex
Kobayashi, K.
,
Saito, K.
,
Ishitani, R.
,
Ito, K.
,
Nureki, O.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 10.43 MB
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english, 2012
2
Identification of new microRNA-regulated genes by conserved targeting in plant species
Chorostecki, U.
,
Crosa, V. A.
,
Lodeyro, A. F.
,
Bologna, N. G.
,
Martin, A. P.
,
Carrillo, N.
,
Schommer, C.
,
Palatnik, J. F.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 7.73 MB
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english, 2012
3
FunciSNP: an R/bioconductor tool integrating functional non-coding data sets with genetic association studies to identify candidate regulatory SNPs
Coetzee, S. G.
,
Rhie, S. K.
,
Berman, B. P.
,
Coetzee, G. A.
,
Noushmehr, H.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 585 KB
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english, 2012
4
Higher order oligomerization is required for H-NS family member MvaT to form gene-silencing nucleoprotein filament
Winardhi, R. S.
,
Fu, W.
,
Castang, S.
,
Li, Y.
,
Dove, S. L.
,
Yan, J.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 5.94 MB
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english, 2012
5
Sequence signatures of direct complementarity between mRNAs and cognate proteins on multiple levels
Hlevnjak, M.
,
Polyansky, A. A.
,
Zagrovic, B.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 5.90 MB
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english, 2012
6
Functional screening for miRNAs targeting Smad4 identified miR-199a as a negative regulator of TGF- signalling pathway
Zhang, Y.
,
Fan, K.-J.
,
Sun, Q.
,
Chen, A.-Z.
,
Shen, W.-L.
,
Zhao, Z.-H.
,
Zheng, X.-F.
,
Yang, X.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 2.54 MB
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english, 2012
7
Design, implementation and practice of JBEI-ICE: an open source biological part registry platform and tools
Ham, T. S.
,
Dmytriv, Z.
,
Plahar, H.
,
Chen, J.
,
Hillson, N. J.
,
Keasling, J. D.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 5.10 MB
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english, 2012
8
Customized optimization of metabolic pathways by combinatorial transcriptional engineering
Du, J.
,
Yuan, Y.
,
Si, T.
,
Lian, J.
,
Zhao, H.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.89 MB
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english, 2012
9
Right- and left-loop short shRNAs have distinct and unusual mechanisms of gene silencing
Dallas, A.
,
Ilves, H.
,
Ge, Q.
,
Kumar, P.
,
Shorenstein, J.
,
Kazakov, S. A.
,
Cuellar, T. L.
,
McManus, M. T.
,
Behlke, M. A.
,
Johnston, B. H.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 4.44 MB
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10
The epigenetic control of E-box and Myc-dependent chromatin modifications regulate the licensing of lamin B2 origin during cell cycle
Swarnalatha, M.
,
Singh, A. K.
,
Kumar, V.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 2.66 MB
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11
Subscriptions
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 48 KB
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12
Structural insights into recognition and repair of UV-DNA damage by Spore Photoproduct Lyase, a radical SAM enzyme
Benjdia, A.
,
Heil, K.
,
Barends, T. R. M.
,
Carell, T.
,
Schlichting, I.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 6.65 MB
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english, 2012
13
Phosphorothioate DNA as an antioxidant in bacteria
Xie, X.
,
Liang, J.
,
Pu, T.
,
Xu, F.
,
Yao, F.
,
Yang, Y.
,
Zhao, Y.-L.
,
You, D.
,
Zhou, X.
,
Deng, Z.
,
Wang, Z.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 6.38 MB
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english, 2012
14
Crucial role of dynamic linker histone binding and divalent ions for DNA accessibility and gene regulation revealed by mesoscale modeling of oligonucleosomes
Collepardo-Guevara, R.
,
Schlick, T.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.99 MB
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15
Monitoring bypass of single replication-blocking lesions by damage avoidance in the Escherichia coli chromosome
Pages, V.
,
Mazon, G.
,
Naiman, K.
,
Philippin, G.
,
Fuchs, R. P.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 1.06 MB
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16
PKC phosphorylates HEXIM1 and regulates P-TEFb activity
Fujinaga, K.
,
Barboric, M.
,
Li, Q.
,
Luo, Z.
,
Price, D. H.
,
Peterlin, B. M.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.13 MB
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english, 2012
17
SVM2: an improved paired-end-based tool for the detection of small genomic structural variations using high-throughput single-genome resequencing data
Chiara, M.
,
Pesole, G.
,
Horner, D. S.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 1.04 MB
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18
The solution structure of double helical arabino nucleic acids (ANA and 2'F-ANA): effect of arabinoses in duplex-hairpin interconversion
Martin-Pintado, N.
,
Yahyaee-Anzahaee, M.
,
Campos-Olivas, R.
,
Noronha, A. M.
,
Wilds, C. J.
,
Damha, M. J.
,
Gonzalez, C.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 7.66 MB
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english, 2012
19
Trans-kingdom rescue of Gln-tRNAGln synthesis in yeast cytoplasm and mitochondria
Liao, C.-C.
,
Lin, C.-H.
,
Chen, S.-J.
,
Wang, C.-C.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 5.62 MB
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20
Movement of DNA sequence recognition domains between non-orthologous proteins
Furuta, Y.
,
Kobayashi, I.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 16.04 MB
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21
Protein kinase CK2 inactivates PRH/Hhex using multiple mechanisms to de-repress VEGF-signalling genes and promote cell survival
Noy, P.
,
Sawasdichai, A.
,
Jayaraman, P.-S.
,
Gaston, K.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.59 MB
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english, 2012
22
Expression of endogenous retroviruses is negatively regulated by the pluripotency marker Rex1/Zfp42
Guallar, D.
,
Perez-Palacios, R.
,
Climent, M.
,
Martinez-Abadia, I.
,
Larraga, A.
,
Fernandez-Juan, M.
,
Vallejo, C.
,
Muniesa, P.
,
Schoorlemmer, J.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 1.25 MB
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23
Computational analysis of target hub gene repression regulated by multiple and cooperative miRNAs
Lai, X.
,
Schmitz, U.
,
Gupta, S. K.
,
Bhattacharya, A.
,
Kunz, M.
,
Wolkenhauer, O.
,
Vera, J.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 11.08 MB
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24
One Hand Clapping: detection of condition-specific transcription factor interactions from genome-wide gene activity data
Dumcke, S.
,
Seizl, M.
,
Etzold, S.
,
Pirkl, N.
,
Martin, D. E.
,
Cramer, P.
,
Tresch, A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 1.82 MB
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english, 2012
25
'Shotgun DNA synthesis' for the high-throughput construction of large DNA molecules
Kim, H.
,
Han, H.
,
Ahn, J.
,
Lee, J.
,
Cho, N.
,
Jang, H.
,
Kim, H.
,
Kwon, S.
,
Bang, D.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.97 MB
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26
The CR3 motif of Rrp44p is important for interaction with the core exosome and exosome function
Schaeffer, D.
,
Reis, F. P.
,
Johnson, S. J.
,
Arraiano, C. M.
,
van Hoof, A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.51 MB
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27
Fidelity of capture-enrichment for mtDNA genome sequencing: influence of NUMTs
Li, M.
,
Schroeder, R.
,
Ko, A.
,
Stoneking, M.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.26 MB
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28
A common feature from different subunits of a homomeric AAA+ protein contacts three spatially distinct transcription elements
Zhang, N.
,
Joly, N.
,
Buck, M.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 9.80 MB
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29
The co-regulation mechanism of transcription factors in the human gene regulatory network
Kim, J.
,
Choi, M.
,
Kim, J.-R.
,
Jin, H.
,
Kim, V. N.
,
Cho, K.-H.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 15.06 MB
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30
NF45 dimerizes with NF90, Zfr and SPNR via a conserved domain that has a nucleotidyltransferase fold
Wolkowicz, U. M.
,
Cook, A. G.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 14.29 MB
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31
Poly(A) binding protein nuclear 1 levels affect alternative polyadenylation
de Klerk, E.
,
Venema, A.
,
Anvar, S. Y.
,
Goeman, J. J.
,
Hu, O.
,
Trollet, C.
,
Dickson, G.
,
den Dunnen, J. T.
,
van der Maarel, S. M.
,
Raz, V.
,
't Hoen, P. A. C.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 2.03 MB
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32
Structural and functional analysis of the transcriptional regulator Rv3066 of Mycobacterium tuberculosis
Bolla, J. R.
,
Do, S. V.
,
Long, F.
,
Dai, L.
,
Su, C.-C.
,
Lei, H.-T.
,
Chen, X.
,
Gerkey, J. E.
,
Murphy, D. C.
,
Rajashankar, K. R.
,
Zhang, Q.
,
Yu, E. W.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 11.33 MB
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33
Epigenetic control of alternative mRNA processing at the imprinted Herc3/Nap1l5 locus
Cowley, M.
,
Wood, A. J.
,
Bohm, S.
,
Schulz, R.
,
Oakey, R. J.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 2.46 MB
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34
A NAC transcription factor and SNI1 cooperatively suppress basal pathogen resistance in Arabidopsis thaliana
Kim, H. S.
,
Park, H. C.
,
Kim, K. E.
,
Jung, M. S.
,
Han, H. J.
,
Kim, S. H.
,
Kwon, Y. S.
,
Bahk, S.
,
An, J.
,
Bae, D. W.
,
Yun, D.-J.
,
Kwak, S.-S.
,
Chung, W. S.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.36 MB
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35
A fractal model for nuclear organization: current evidence and biological implications
Bancaud, A.
,
Lavelle, C.
,
Huet, S.
,
Ellenberg, J.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.96 MB
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36
Detection of DNA-protein crosslinks (DPCs) by novel direct fluorescence labeling methods: distinct stabilities of aldehyde and radiation-induced DPCs
Shoulkamy, M. I.
,
Nakano, T.
,
Ohshima, M.
,
Hirayama, R.
,
Uzawa, A.
,
Furusawa, Y.
,
Ide, H.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 1.99 MB
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37
Probing hybridization parameters from microarray experiments: nearest-neighbor model and beyond
Hadiwikarta, W. W.
,
Walter, J.- C.
,
Hooyberghs, J.
,
Carlon, E.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 655 KB
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38
Preferred WMSA catalytic mechanism of the nucleotidyl transfer reaction in human DNA polymerase elucidates error-free bypass of a bulky DNA lesion
Lior-Hoffmann, L.
,
Wang, L.
,
Wang, S.
,
Geacintov, N. E.
,
Broyde, S.
,
Zhang, Y.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 7.96 MB
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39
Nucleic Acids Research: VOLUME 40 ISSUE 18 2012
Journal:
Nucleic Acids Research
Year:
2012
File:
PDF, 645 KB
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2012
40
Computational identification of new structured cis-regulatory elements in the 3'-untranslated region of human protein coding genes
Chen, X. S.
,
Brown, C. M.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.58 MB
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english, 2012
41
A novel ab initio identification system of transcriptional regulation motifs in genome DNA sequences based on direct comparison scheme of signal/noise distributions
Nakaki, R.
,
Kang, J.
,
Tateno, M.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 5.33 MB
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42
Mammalian NUMT insertion is non-random
Tsuji, J.
,
Frith, M. C.
,
Tomii, K.
,
Horton, P.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 6.17 MB
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43
Regulatory consequences of gene translocation in bacteria
Block, D. H. S.
,
Hussein, R.
,
Liang, L. W.
,
Lim, H. N.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 7.92 MB
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english, 2012
44
Protein L5 is crucial for in vivo assembly of the bacterial 50S ribosomal subunit central protuberance
Korepanov, A. P.
,
Korobeinikova, A. V.
,
Shestakov, S. A.
,
Garber, M. B.
,
Gongadze, G. M.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 4.35 MB
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45
Proximity of H2A.Z containing nucleosome to the transcription start site influences gene expression levels in the mammalian liver and brain
Bargaje, R.
,
Alam, M. P.
,
Patowary, A.
,
Sarkar, M.
,
Ali, T.
,
Gupta, S.
,
Garg, M.
,
Singh, M.
,
Purkanti, R.
,
Scaria, V.
,
Sivasubbu, S.
,
Brahmachari, V.
,
Pillai, B.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 15.56 MB
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46
Residues of E. coli topoisomerase I conserved for interaction with a specific cytosine base to facilitate DNA cleavage
Narula, G.
,
Tse-Dinh, Y.-C.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 5.49 MB
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47
Quantification of RNA integrity and its use for measurement of transcript number
Brisco, M. J.
,
Morley, A. A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 218 KB
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48
Spi-1/PU.1 activates transcription through clustered DNA occupancy in erythroleukemia
Ridinger-Saison, M.
,
Boeva, V.
,
Rimmele, P.
,
Kulakovskiy, I.
,
Gallais, I.
,
Levavasseur, B.
,
Paccard, C.
,
Legoix-Ne, P.
,
Morle, F.
,
Nicolas, A.
,
Hupe, P.
,
Barillot, E.
,
Moreau-Gachelin, F.
,
Guillouf, C
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 8.19 MB
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49
Lesion-specific DNA-binding and repair activities of human O6-alkylguanine DNA alkyltransferase
Melikishvili, M.
,
Fried, M. G.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 2.79 MB
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english, 2012
50
The core regulation module of stress-responsive regulatory networks in yeast
Kim, D.
,
Kim, M.-S.
,
Cho, K.-H.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 4.97 MB
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english, 2012
51
Repair of cisplatin-induced DNA interstrand crosslinks by a replication-independent pathway involving transcription-coupled repair and translesion synthesis
Enoiu, M.
,
Jiricny, J.
,
Scharer, O. D.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 829 KB
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english, 2012
52
Splicing of internal large exons is defined by novel cis-acting sequence elements
Bolisetty, M. T.
,
Beemon, K. L.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 4.29 MB
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english, 2012
53
Kinetics of endogenous mouse FEN1 in base excision repair
Kleppa, L.
,
Mari, P.-O.
,
Larsen, E.
,
Lien, G. F.
,
Godon, C.
,
Theil, A. F.
,
Nesse, G. J.
,
Wiksen, H.
,
Vermeulen, W.
,
Giglia-Mari, G.
,
Klungland, A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 21.38 MB
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english, 2012
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