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Volume 40; Issue 19
Main
Nucleic Acids Research
Volume 40; Issue 19
Nucleic Acids Research
Volume 40; Issue 19
1
GFam: a platform for automatic annotation of gene families
Sasidharan, R.
,
Nepusz, T.
,
Swarbreck, D.
,
Huala, E.
,
Paccanaro, A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 1.38 MB
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english, 2012
2
microRNAs associated with the different human Argonaute proteins
Dueck, A.
,
Ziegler, C.
,
Eichner, A.
,
Berezikov, E.
,
Meister, G.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 7.74 MB
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english, 2012
3
Toward a combinatorial nature of microRNA regulation in human cells
Balaga, O.
,
Friedman, Y.
,
Linial, M.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 5.83 MB
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english, 2012
4
A distant cis acting intronic element induces site-selective RNA editing
Daniel, C.
,
Veno, M. T.
,
Ekdahl, Y.
,
Kjems, J.
,
Ohman, M.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.00 MB
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english, 2012
5
Transferring isolated mitochondria into tissue culture cells
Yang, Y.-W.
,
Koob, M. D.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 6.90 MB
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english, 2012
6
2'-Deoxyriboguanylurea, the primary breakdown product of 5-aza-2'-deoxyribocytidine, is a mutagen, an epimutagen, an inhibitor of DNA methyltransferases and an inducer of 5-azacytidine-type fragile sites
Lamparska, K.
,
Clark, J.
,
Babilonia, G.
,
Bedell, V.
,
Yip, W.
,
Smith, S. S.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.47 MB
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english, 2012
7
p53-Independent regulation of p21Waf1/Cip1 expression and senescence by PRMT6
Phalke, S.
,
Mzoughi, S.
,
Bezzi, M.
,
Jennifer, N.
,
Mok, W. C.
,
Low, D. H. P.
,
Thike, A. A.
,
Kuznetsov, V. A.
,
Tan, P. H.
,
Voorhoeve, P. M.
,
Guccione, E.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 4.29 MB
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english, 2012
8
The role of Ca2+ in the activity of Mycobacterium tuberculosis DNA gyrase
Karkare, S.
,
Yousafzai, F.
,
Mitchenall, L. A.
,
Maxwell, A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 5.62 MB
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english, 2012
9
Genome-wide identification of genes directly regulated by the pleiotropic transcription factor Spx in Bacillus subtilis
Rochat, T.
,
Nicolas, P.
,
Delumeau, O.
,
Rabatinova, A.
,
Korelusova, J.
,
Leduc, A.
,
Bessieres, P.
,
Dervyn, E.
,
Krasny, L.
,
Noirot, P.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 6.25 MB
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english, 2012
10
Structure and cleavage activity of the tetrameric MspJI DNA modification-dependent restriction endonuclease
Horton, J. R.
,
Mabuchi, M. Y.
,
Cohen-Karni, D.
,
Zhang, X.
,
Griggs, R. M.
,
Samaranayake, M.
,
Roberts, R. J.
,
Zheng, Y.
,
Cheng, X.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 18.65 MB
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11
3D chromatin conformation correlates with replication timing and is conserved in resting cells
Moindrot, B.
,
Audit, B.
,
Klous, P.
,
Baker, A.
,
Thermes, C.
,
de Laat, W.
,
Bouvet, P.
,
Mongelard, F.
,
Arneodo, A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 10.55 MB
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english, 2012
12
Cockayne Syndrome group B protein interacts with TRF2 and regulates telomere length and stability
Batenburg, N. L.
,
Mitchell, T. R. H.
,
Leach, D. M.
,
Rainbow, A. J.
,
Zhu, X.-D.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 10.74 MB
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english, 2012
13
Discovery of multi-dimensional modules by integrative analysis of cancer genomic data
Zhang, S.
,
Liu, C.-C.
,
Li, W.
,
Shen, H.
,
Laird, P. W.
,
Zhou, X. J.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.51 MB
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english, 2012
14
Co-clustering phenome-genome for phenotype classification and disease gene discovery
Hwang, T.
,
Atluri, G.
,
Xie, M.
,
Dey, S.
,
Hong, C.
,
Kumar, V.
,
Kuang, R.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.36 MB
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english, 2012
15
Motif effects in Affymetrix GeneChips seriously affect probe intensities
Upton, G. J. G.
,
Harrison, A. P.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 816 KB
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16
Diverse control of metabolism and other cellular processes in Streptomyces coelicolor by the PhoP transcription factor: genome-wide identification of in vivo targets
Allenby, N. E. E.
,
Laing, E.
,
Bucca, G.
,
Kierzek, A. M.
,
Smith, C. P.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 6.42 MB
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english, 2012
17
Winding single-molecule double-stranded DNA on a nanometer-sized reel
You, H.
,
Iino, R.
,
Watanabe, R.
,
Noji, H.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 1.40 MB
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18
Interaction of nucleolin with ribosomal RNA genes and its role in RNA polymerase I transcription
Cong, R.
,
Das, S.
,
Ugrinova, I.
,
Kumar, S.
,
Mongelard, F.
,
Wong, J.
,
Bouvet, P.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 1.53 MB
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english, 2012
19
Detection of dispersed short tandem repeats using reversible jump Markov chain Monte Carlo
Liang, T.
,
Fan, X.
,
Li, Q.
,
Li, S.-y. R.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 274 KB
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english, 2012
20
Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis
Richter, H.
,
Zoephel, J.
,
Schermuly, J.
,
Maticzka, D.
,
Backofen, R.
,
Randau, L.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 4.34 MB
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english, 2012
21
Helicobacter pylori oriC--the first bipartite origin of chromosome replication in Gram-negative bacteria
Donczew, R.
,
Weigel, C.
,
Lurz, R.
,
Zakrzewska-Czerwinska, J.
,
Zawilak-Pawlik, A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 12.00 MB
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english, 2012
22
Recurrent transcriptional clusters in the genome of mouse pluripotent stem cells
Skylaki, S.
,
Tomlinson, S. R.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 13.88 MB
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english, 2012
23
Cell type-specific genomics of Drosophila neurons
Henry, G. L.
,
Davis, F. P.
,
Picard, S.
,
Eddy, S. R.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 13.45 MB
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english, 2012
24
PDGF enhances IRES-mediated translation of Laminin B1 by cytoplasmic accumulation of La during epithelial to mesenchymal transition
Petz, M.
,
Them, N. C. C.
,
Huber, H.
,
Mikulits, W.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 6.62 MB
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english, 2012
25
Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA
Morera, S.
,
Grin, I.
,
Vigouroux, A.
,
Couve, S.
,
Henriot, V.
,
Saparbaev, M.
,
Ishchenko, A. A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 4.38 MB
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english, 2012
26
Intrinsic properties of Tcf1 and Tcf4 splice variants determine cell-type-specific Wnt/ -catenin target gene expression
Wallmen, B.
,
Schrempp, M.
,
Hecht, A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 5.87 MB
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english, 2012
27
DNA stabilization at the Bacillus subtilis PolX core--a binding model to coordinate polymerase, AP-endonuclease and 3'-5' exonuclease activities
Banos, B.
,
Villar, L.
,
Salas, M.
,
de Vega, M.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 11.35 MB
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english, 2012
28
dKDM5/LID regulates H3K4me3 dynamics at the transcription-start site (TSS) of actively transcribed developmental genes
Lloret-Llinares, M.
,
Perez-Lluch, S.
,
Rossell, D.
,
Moran, T.
,
Ponsa-Cobas, J.
,
Auer, H.
,
Corominas, M.
,
Azorin, F.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 1.73 MB
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29
p32/gC1qR is indispensable for fetal development and mitochondrial translation: importance of its RNA-binding ability
Yagi, M.
,
Uchiumi, T.
,
Takazaki, S.
,
Okuno, B.
,
Nomura, M.
,
Yoshida, S.-i.
,
Kanki, T.
,
Kang, D.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 6.01 MB
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30
The ATPase activity of Fml1 is essential for its roles in homologous recombination and DNA repair
Nandi, S.
,
Whitby, M. C.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 5.30 MB
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english, 2012
31
A small RNA response at DNA ends in Drosophila
Michalik, K. M.
,
Bottcher, R.
,
Forstemann, K.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 337 KB
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english, 2012
32
Nucleotide excision repair of 2-acetylaminofluorene- and 2-aminofluorene-(C8)-guanine adducts: molecular dynamics simulations elucidate how lesion structure and base sequence context impact repair efficiencies
Mu, H.
,
Kropachev, K.
,
Wang, L.
,
Zhang, L.
,
Kolbanovskiy, A.
,
Kolbanovskiy, M.
,
E. Geacintov, N.
,
Broyde, S.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 10.43 MB
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33
Subscriptions
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 49 KB
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34
Nucleoside analog studies indicate mechanistic differences between RNA-editing adenosine deaminases
Mizrahi, R. A.
,
Phelps, K. J.
,
Ching, A. Y.
,
Beal, P. A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 2.67 MB
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35
Histone dosage regulates DNA damage sensitivity in a checkpoint-independent manner by the homologous recombination pathway
Liang, D.
,
Burkhart, S. L.
,
Singh, R. K.
,
Kabbaj, M.-H. M.
,
Gunjan, A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.61 MB
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36
Targeting a pre-mRNA structure with bipartite antisense molecules modulates tau alternative splicing
Peacey, E.
,
Rodriguez, L.
,
Liu, Y.
,
Wolfe, M. S.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 5.83 MB
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37
Structural and functional analyses of the interaction of archaeal RNA polymerase with DNA
Wojtas, M. N.
,
Mogni, M.
,
Millet, O.
,
Bell, S. D.
,
Abrescia, N. G. A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 15.28 MB
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38
Ablation of PRMT6 reveals a role as a negative transcriptional regulator of the p53 tumor suppressor
Neault, M.
,
Mallette, F. A.
,
Vogel, G.
,
Michaud-Levesque, J.
,
Richard, S.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 7.09 MB
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english, 2012
39
Deoxycytidine kinase regulates the G2/M checkpoint through interaction with cyclin-dependent kinase 1 in response to DNA damage
Yang, C.
,
Lee, M.
,
Hao, J.
,
Cui, X.
,
Guo, X.
,
Smal, C.
,
Bontemps, F.
,
Ma, S.
,
Liu, X.
,
Engler, D.
,
Parker, W. B.
,
Xu, B.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 1.99 MB
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english, 2012
40
Meiotic DNA joint molecule resolution depends on Nse5-Nse6 of the Smc5-Smc6 holocomplex
Wehrkamp-Richter, S.
,
Hyppa, R. W.
,
Prudden, J.
,
Smith, G. R.
,
Boddy, M. N.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 11.30 MB
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41
Structure of the RNA claw of the DNA packaging motor of bacteriophage 29
Harjes, E.
,
Kitamura, A.
,
Zhao, W.
,
Morais, M. C.
,
Jardine, P. J.
,
Grimes, S.
,
Matsuo, H.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 5.35 MB
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42
Nucleic Acids Research - Editorial Board
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 58 KB
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43
Towards the classification of DYT6 dystonia mutants in the DNA-binding domain of THAP1
Campagne, S.
,
Muller, I.
,
Milon, A.
,
Gervais, V.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 6.69 MB
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english, 2012
44
Quantitative mass spectrometry and PAR-CLIP to identify RNA-protein interactions
Scheibe, M.
,
Butter, F.
,
Hafner, M.
,
Tuschl, T.
,
Mann, M.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 441 KB
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english, 2012
45
Rhythmic binding of Topoisomerase I impacts on the transcription of Bmal1 and circadian period
Onishi, Y.
,
Kawano, Y.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.99 MB
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english, 2012
46
Translation termination efficiency modulates ATF4 response by regulating ATF4 mRNA translation at 5' short ORFs
Ait Ghezala, H.
,
Jolles, B.
,
Salhi, S.
,
Castrillo, K.
,
Carpentier, W.
,
Cagnard, N.
,
Bruhat, A.
,
Fafournoux, P.
,
Jean-Jean, O.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 4.18 MB
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47
The processing of repetitive extragenic palindromes: the structure of a repetitive extragenic palindrome bound to its associated nuclease
Messing, S. A. J.
,
Ton-Hoang, B.
,
Hickman, A. B.
,
McCubbin, A. J.
,
Peaslee, G. F.
,
Ghirlando, R.
,
Chandler, M.
,
Dyda, F.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 13.02 MB
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english, 2012
48
Subtypes of associated protein-DNA (Transcription Factor-Transcription Factor Binding Site) patterns
Chan, T.-M.
,
Leung, K.-S.
,
Lee, K.-H.
,
Wong, M.-H.
,
Lau, T. C.-K.
,
Tsui, S. K.-W.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 7.36 MB
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english, 2012
49
DNA of a circular minichromosome linearized by restriction enzymes or other reagents is resistant to further cleavage: an influence of chromatin topology on the accessibility of DNA
Kumala, S.
,
Hadj-Sahraoui, Y.
,
Rzeszowska-Wolny, J.
,
Hancock, R.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 7.02 MB
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english, 2012
50
Nucleosomes affect local transformation efficiency
Aslankoohi, E.
,
Voordeckers, K.
,
Sun, H.
,
Sanchez-Rodriguez, A.
,
van der Zande, E.
,
Marchal, K.
,
Verstrepen, K. J.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.59 MB
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51
A novel Plasmodium falciparum SR protein is an alternative splicing factor required for the parasites' proliferation in human erythrocytes
Eshar, S.
,
Allemand, E.
,
Sebag, A.
,
Glaser, F.
,
Muchardt, C.
,
Mandel-Gutfreund, Y.
,
Karni, R.
,
Dzikowski, R.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 4.71 MB
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english, 2012
52
Silencing of Parkinson's disease-associated genes with artificial mirtron mimics of miR-1224
Sibley, C. R.
,
Seow, Y.
,
Curtis, H.
,
Weinberg, M. S.
,
Wood, M. J. A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 3.42 MB
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english, 2012
53
Identification of differentially expressed non-coding RNAs in embryonic stem cell neural differentiation
Skreka, K.
,
Schafferer, S.
,
Nat, I.-R.
,
Zywicki, M.
,
Salti, A.
,
Apostolova, G.
,
Griehl, M.
,
Rederstorff, M.
,
Dechant, G.
,
Huttenhofer, A.
Journal:
Nucleic Acids Research
Year:
2012
File:
PDF, 31 KB
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2012
54
Identification of differentially expressed non-coding RNAs in embryonic stem cell neural differentiation
Skreka, K.
,
Schafferer, S.
,
Nat, I.-R.
,
Zywicki, M.
,
Salti, A.
,
Apostolova, G.
,
Griehl, M.
,
Rederstorff, M.
,
Dechant, G.
,
Huttenhofer, A.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 31 KB
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english, 2012
55
A single amino acid change in histone H4 enhances UV survival and DNA repair in yeast
Nag, R.
,
Gong, F.
,
Fahy, D.
,
Smerdon, M. J.
Journal:
Nucleic Acids Research
Year:
2012
Language:
english
File:
PDF, 340 KB
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english, 2012
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